View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14365_low_9 (Length: 397)
Name: NF14365_low_9
Description: NF14365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14365_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 33126774 - 33126413
Alignment:
| Q |
19 |
gggaagtgtaggaggggtaggaggtggaggaatttttatccctatgctcactttgattattggttttgatccaaagtcttctacagccctctctaagtgt |
118 |
Q |
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| T |
33126774 |
gggaagtgtaggaggggtaggaggtggaggaatttttatccctatgctcactttgatcattggttttgatccaaagtcttctacagccctctctaagtgt |
33126675 |
T |
|
| Q |
119 |
tagtatatttctatcttatgtttattcattcttgttagatatatagtcgatgtttggatttacgtttcaattatctttctcacgtctcaaatacagtttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126674 |
tagtatatttctatcttatgtttattcattcttgttagatgtatagtcgatgtttggatttacgtttcaattatctttctcacgtctcaaatacagtttt |
33126575 |
T |
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| Q |
219 |
ggacctgaaattggtgaagctacaaatagtagcatgtggctggtcgcgattcagaagctatatgaactagcttctgaatgcggttccaaacacacaatac |
318 |
Q |
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| T |
33126574 |
ggacctgaaattggtgcagctacaaatagtagcatgtggttggctgcgattcagaagctatatgaactagcttctgaatgcggttccaaacacacaatac |
33126475 |
T |
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| Q |
319 |
atgcattctttctaaatttttatcgatgtgtcccaattcattttcgaaagctctttcaaatg |
380 |
Q |
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| T |
33126474 |
atgcattctttctaaatttttatcgatgtgtcccaattcattttcgaaagcactttcaaatg |
33126413 |
T |
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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 7568641 - 7568728
Alignment:
| Q |
19 |
gggaagtgtaggaggggtaggaggtggaggaatttttatccctatgctcactttgattattggttttgatccaaagtcttctacagcc |
106 |
Q |
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| T |
7568641 |
gggaagtgttggaggtgtaggaggtggtggaatttttgtccctatgcttgctttgatcattggctttgatcccaagtcttctacagcc |
7568728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 32663699 - 32663744
Alignment:
| Q |
162 |
tagtcgatgtttggatttacgtttcaattatctttctcacgtctca |
207 |
Q |
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| T |
32663699 |
tagtcaatgtttggatttacatttgaattgtctttctcacgtctca |
32663744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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