View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_10 (Length: 617)
Name: NF14366_high_10
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 15 - 595
Target Start/End: Complemental strand, 26123329 - 26122752
Alignment:
| Q |
15 |
agacataaactactatataataattaatgtataccctaccaaaaa-tcaaattctcaatgctaattgattgaaatagaagccaagaatacatgatatata |
113 |
Q |
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| T |
26123329 |
agacataaactactatataataattaatgtataccctaccaaaaaatcaaattctcaatgctaattgattgaaatagaagccaagaatacatgatatata |
26123230 |
T |
|
| Q |
114 |
gaagaccaacgtcaacctcataatcctccaaaatatccatccaaggtatcgatcatccctcaccactctctttcaatatatatcattttccaatagaaaa |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26123229 |
gaagaccaacgtcaacctcacaatcctccaaaatatccatccaaggtatcgatcatccctcaccactctctttcaatatatatcattttccaatagaaaa |
26123130 |
T |
|
| Q |
214 |
ttccttatttttgcaagttgagaaccaacatccaaattccaaaccacacattataaaagtcccacatgaaacaagacacgtacgtttgtcacataccata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26123129 |
ttccttatttttgcaagttgagaaccaacatccaaattccaaaccacacattataaaagtcccacatgaaacaagacacgtacgtttgtcacataccata |
26123030 |
T |
|
| Q |
314 |
caaaagaacccctcgtagtcttgtcttgtggggtgacgtgtgaactaatttcccactcatttcattctccttatgcctttaattttcttccccatacaca |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
26123029 |
caaaagaacccctcgtagtcttgtcttgtggggtgacgtgtgaactaatttcccactcatttcattctcctcatgcctttaattttcttccccat----a |
26122934 |
T |
|
| Q |
414 |
cactgtcacacaaaaccaagactcaaaaataatattcatagcacacagaaattaaaatatcaacactatatactttcttcaatatggtcctgttttgcat |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26122933 |
cactgtcacacaaaaccaagactcaaaaataatattcatagcacacagaaattaaaatatcaacactatatacattcttcaatatggtcctgttttgcat |
26122834 |
T |
|
| Q |
514 |
gaaagagaacaacacaaacacaaacacaaataccactacaatgactcaccaatcatctactaaatctcatgacctaattgat |
595 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26122833 |
gaaagagaacaacacaaacacaaacacaaatactactacaatgactcaccaatcatctactaaatctcatgacctaattgat |
26122752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 42365288 - 42365329
Alignment:
| Q |
280 |
tgaaacaagacacgtacgtttgtcacataccatacaaaagaa |
321 |
Q |
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| T |
42365288 |
tgaaacaagacacgtagatttgtcacttaccatacaaaagaa |
42365329 |
T |
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