View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_11 (Length: 597)
Name: NF14366_high_11
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 23 - 578
Target Start/End: Complemental strand, 39581658 - 39581105
Alignment:
| Q |
23 |
aacggcccagaagatttacagcagacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaat |
122 |
Q |
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| T |
39581658 |
aacggcccagaagatttacaccagacacttttaccagagatgtttgagcagccagaaaccgagctgggaag-ataagtaaaggaatctatgaaataaaat |
39581560 |
T |
|
| Q |
123 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581559 |
acaagcttggaaggaaaaaggttctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccagg |
39581460 |
T |
|
| Q |
223 |
tagtagggtcattataactacaagggacaaatgtttgcttgtaggtactcattcttttgtagtacaaagtatttatgaaatgactgaacttagtgatcaa |
322 |
Q |
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| T |
39581459 |
tagtacggtcattataactacaagggacaaaggtttgcttgtaggtactcattcttttgtagttcaaagtatttatgaaatgactgaacttagtgatcaa |
39581360 |
T |
|
| Q |
323 |
cattctcttgagttgttttgtcgaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccatgtcttctcgtgcggttggttatgcaaaaggtc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39581359 |
cattctcttgagttgttttgtcgaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccacgtcttctcgtgcggttggttatgcaaaaggtc |
39581260 |
T |
|
| Q |
423 |
ttccattggctttaaaagtaataggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgtaa |
522 |
Q |
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| T |
39581259 |
ttccattggctttaaaagtaataggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgtaa |
39581160 |
T |
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| Q |
523 |
aggggattcaagatgtgctaaaagtaagctatgatgtgttggagccgtatgctcag |
578 |
Q |
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| T |
39581159 |
a-gggattcaagatgtgctaaaagtaagctatgatgtgttgcagccgtatgctcag |
39581105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 45 - 568
Target Start/End: Original strand, 39620323 - 39620845
Alignment:
| Q |
45 |
agacacttttatcagagatgtttgagcagccagaaaccgagctgggaagtacaagtaaaggaatctatgaaataaaatacaagcttggaaggaaaaaggt |
144 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| | |||||||| | ||||| || | |||||||| |
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| T |
39620323 |
agacacttttatcagagatgtttgagaagccagataccgatctgggaagtacaagtaaaggaatcaaagaaataaagcaaaagctgggcaataaaaaggt |
39620422 |
T |
|
| Q |
145 |
tctgttggttcttgatgatgttgatgagatggaacaaataggaaatttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactaca |
244 |
Q |
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||| |||||||||||||| |||||| | | |||||| || |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
39620423 |
tcttttggttcttgatgacgttgataacaaagaacaattaaaaaatttggcaggaggaagtgattggtttggcccaggtagtaggatcattataactaca |
39620522 |
T |
|
| Q |
245 |
agggacaaatgtttgcttgtaggtactcattcttttgtagtacaaagtatttatgaaatgactgaacttagtgatcaacattctcttgagttgttttgtc |
344 |
Q |
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||||||||| ||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||| |
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| T |
39620523 |
agggacaaaggtttgctcataggtactcattcttttgttgttcaaaagatttatgaaatgactgaacttaatgagaaagattctcttgagttgttttgtc |
39620622 |
T |
|
| Q |
345 |
gaaatgcctttggaaaaagcaatcctgaaacaggatatgaagccatgtcttctcgtgcggttggttatgcaaaaggtcttccattggctttaaaagtaat |
444 |
Q |
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| T |
39620623 |
ggaatgcctttggaaagagccatcctgaaacaggctatgaagctgtgtcttctcgtgcggttggatatgccaagggtcttccattggctttaaaagtaat |
39620722 |
T |
|
| Q |
445 |
aggctccaatttggctactagaaaaagtttaaaagcttgggagcatgcgttgaaagattatgagaggattcctcgtaaaggggattcaagatgtgctaaa |
544 |
Q |
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||| || ||||||| | | |||| ||||||| ||||||||| |||| |||||| |||| || |||||||| |||| | || |||||||| ||||| | |
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| T |
39620723 |
aggttctaatttgggtggtggaaagagtttaagagcttgggaagatgcattgaaaaattacgacaggattccacgtaga-ggaattcaagaggtgctcca |
39620821 |
T |
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| Q |
545 |
agtaagctatgatgtgttggagcc |
568 |
Q |
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| T |
39620822 |
agtaagctacaatgtgttggagcc |
39620845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 7761765 - 7761716
Alignment:
| Q |
408 |
gttatgcaaaaggtcttccattggctttaaaagtaataggctccaatttg |
457 |
Q |
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| T |
7761765 |
gttatgcaaaaggtattccattggctttaaaagcaataggatccaatttg |
7761716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 7827978 - 7828036
Alignment:
| Q |
191 |
ttggcaggaggaagtgattggtttggtccaggtagtagggtcattataactacaaggga |
249 |
Q |
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||||| |||||| |||||||||||||| | ||||||||| |||| ||||| |||||||| |
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| T |
7827978 |
ttggctggaggacgtgattggtttggttctggtagtaggatcataataacaacaaggga |
7828036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 7754666 - 7754621
Alignment:
| Q |
408 |
gttatgcaaaaggtcttccattggctttaaaagtaataggctccaa |
453 |
Q |
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| T |
7754666 |
gttatgcaaagggtattccattggctttaagagtaataggatccaa |
7754621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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