View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14366_high_19 (Length: 455)
Name: NF14366_high_19
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 28290674 - 28291110
Alignment:
| Q |
1 |
tttccttttatattgaattgtgttaatttgattttctctgaacaggcacttctctaaaactaactaacttctggagcaaaaggggtttggtcccatagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
28290674 |
tttccttttatattgaattgtgttaatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaaggggtttgatcccatagat |
28290773 |
T |
|
| Q |
101 |
tggcaactataatttgtatgtggagttaccgatgattttttgaacttgtttccctcgatgtattgacggttatgtagattcgaaaaggaggaaaagtggt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290774 |
tggcaactataatttgtatgtggagtt-ccggtgattttttgaacttgtttccctcgatgtattgacggttatgtagattcgaaaaggaggaaaagtggt |
28290872 |
T |
|
| Q |
201 |
gcttttgttgatagtttgaccttgcagtgttgtttcttaccttgaatattttgcagtaccgaccaatactagtagcaatttggcataacgatgttctcgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290873 |
gcttttgttgatagtttgaccttgcagtgttgtttcttaccttgaatattttgcagtaccgaccaatactagtagcaatttggcataacgatgttctcgg |
28290972 |
T |
|
| Q |
301 |
atcctgaatttatttcgtctattatccattttttatgtctgaattagtgaaaccacaaataatgatggacacaaaatctagaatcaaagcgtggagtcat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28290973 |
atcctgaatttatttcgtctattatccattttttatgtctgaattagtgaaaccacaaataatgatggacacaaaatctagaatcaaagcgtggagtcat |
28291072 |
T |
|
| Q |
401 |
tctttaaatatagcaaagagaacctactgagatcttat |
438 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28291073 |
tctttaaatatagcaaagagaaactactgagatcttat |
28291110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 29558011 - 29557939
Alignment:
| Q |
19 |
tgtgttaatttgattttctctgaacaggcacttctctaaaactaactaacttctggagcaaaaggggtttggt |
91 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
29558011 |
tgtgtttatttgattttctctgaacaggcacttctctaaaactaaccaacttctggagcaaaaggggattggt |
29557939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 28283047 - 28283132
Alignment:
| Q |
18 |
ttgtgttaatttgattttctctgaacaggcacttctctaaaactaactaacttctggagcaaaaggggtttggtcccatagattgg |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
28283047 |
ttgtgtttgtttgattttctctgaacaggcacttctctaaaactaaccaatatctggagcaaaatgggattggtcccatagattgg |
28283132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 28304898 - 28304994
Alignment:
| Q |
17 |
attgtgttaatttgattttctctgaacaggcacttctctaaaactaactaacttctggagcaaaaggggtttggtcccatagattggcaactataat |
113 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| | |||||| || ||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
28304898 |
attgtgtctatttgcttttctctgaacaggcacttctctcagactaacaaatatctggagcaaatgggcattggtcccatagattggcaactataat |
28304994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 28283265 - 28283328
Alignment:
| Q |
266 |
atactagtagcaatttggcataacgatgttctcggatcctgaatttatttcgtctattatccat |
329 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
28283265 |
atactagtagcaatttggcataacattgttctcggattctgaattgatttcgtctattatccat |
28283328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 28297741 - 28297835
Alignment:
| Q |
19 |
tgtgttaatttgattttctctgaacaggcacttctctaaaactaactaacttctggagcaaaaggggtttggtcccatagattggcaactataat |
113 |
Q |
| |
|
|||||| |||||| ||| | ||| ||||||||||||| |||||||| || ||| | ||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
28297741 |
tgtgtttatttgaatttgtttgagcaggcacttctctcaaactaaccaatatcttgtgcaaacggggattgatcccatagattggcaactataat |
28297835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 329
Target Start/End: Complemental strand, 29557661 - 29557611
Alignment:
| Q |
279 |
tttggcataacgatgttctcggatcctgaatttatttcgtctattatccat |
329 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
29557661 |
tttggcataacgatattctcgaatcctgtattgatttcgtctattatccat |
29557611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 28290628 - 28290663
Alignment:
| Q |
1 |
tttccttttatattgaattgtgttaatttgattttc |
36 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28290628 |
tttccttttatattgaattgtgtttatttgattttc |
28290663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 28297991 - 28298054
Alignment:
| Q |
266 |
atactagtagcaatttggcataacgatgttctcggatcctgaatttatttcgtctattatccat |
329 |
Q |
| |
|
||||| || ||| ||| |||||| ||||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
28297991 |
atactggtggcacttttgcataatgatgttctcggatcctgaactgatttcgtgtattatccat |
28298054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 29557726 - 29557667
Alignment:
| Q |
266 |
atactagtagcaatttggcataacgatgttctcggatcctgaatttatttcgtctattat |
325 |
Q |
| |
|
||||| || ||| |||||||||| |||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
29557726 |
atactggtggcattttggcataaggatgttttcggatcctgaattgatttcatctattat |
29557667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 19251356 - 19251410
Alignment:
| Q |
73 |
ggagcaaaaggggtttggtcccatagattggcaactataatttgtatgtggagtt |
127 |
Q |
| |
|
|||||||| |||| |||||||||||| |||||||||||||| | ||||| ||||| |
|
|
| T |
19251356 |
ggagcaaagggggattggtcccatagtttggcaactataatctatatgtagagtt |
19251410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 28305140 - 28305202
Alignment:
| Q |
267 |
tactagtagcaatttggcataacgatgttctcggatcctgaatttatttcgtctattatccat |
329 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||||| |||| ||||| | ||||||||| |
|
|
| T |
28305140 |
tactagtagcattttggcataacgatattctaggatcctaaattaatttcctgcattatccat |
28305202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University