View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_2 (Length: 995)
Name: NF14366_high_2
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 716; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 19 - 810
Target Start/End: Complemental strand, 2444139 - 2443331
Alignment:
| Q |
19 |
tagagcacaaaaatatggtgaaattagttacttgaatatggtactattacctaggtgagttttaaggtggatgaccatgataaggggtccatggtaaacc |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2444139 |
tagagcacaaaaatatggtgaaattagttacttggatatggtactattacctaggtgagttttaaggtggatgaccttgataaggggtccatggtaaacc |
2444040 |
T |
|
| Q |
119 |
aatacataaaaatcatccaagatgtcggcgatattcttcaaaggatgaaaattactcatgatcatgctcgcctttatggcgaagacagttacatgattaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2444039 |
aatacataaaaatcatccaagatgtcggcgatattcttcaaaggatgaaaattactcatgatcatgctcgcctttatggcgactacagttacatgattaa |
2443940 |
T |
|
| Q |
219 |
tgtcggctcaatgcaagttaggtatatatatat-----ttttaatcaaattaactacgtatttatttagaaggtgttgcttatagatgatgataggttga |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443939 |
tgtcggctcaatgcaagttaggtatatatatatattttttttaatcaaattaactacgtatttatttagaaggtgttgcttatagatgatgataggttga |
2443840 |
T |
|
| Q |
314 |
ataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggttaaaagttgtggttttttcttggactcttcttctagactgtattccaac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443839 |
ataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggtcaaaagttgtggttttttcttggactcttcttctagactgtattccaac |
2443740 |
T |
|
| Q |
414 |
gtgttcaaatcttgcatttggaaacgttttggatcacaacgcattcttaaattgtttgttgtgtggcaaaatggaagatatggtgtgtcaaaacgttttg |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2443739 |
gtgttcaaatcttgcatttggaaacgttttggatcacaacgcattcttaaattgtctgttgtgtggcaaaatggaagatatggtgtttcaaaacgttttg |
2443640 |
T |
|
| Q |
514 |
agatggatggattttaattttgttactccccgaatttatttgtgcacttttcttgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtgg |
613 |
Q |
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| T |
2443639 |
agatggatggattttaattttgttactccccgaatttatttgtgcacttttcttgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtgg |
2443540 |
T |
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| Q |
614 |
ttgatttggcattccaagcttttggtgatttgcagggtgcggaacgaaaggatttgatgcaaccaagtgagggagatt------------gatgggataa |
701 |
Q |
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| T |
2443539 |
ttgatttggcattccaagcttttggtgatttgcagggtgaggaacgaaaggatttgatgcaaccaagtgagggagattgatgaagtaattgatgggataa |
2443440 |
T |
|
| Q |
702 |
aagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaactgctttttaaggttggttgctgtcttgtctttggggttcggatgtgag |
801 |
Q |
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| T |
2443439 |
aagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaactgctttttaaggttggttgctgtcttgtctttggggttcggatgtgag |
2443340 |
T |
|
| Q |
802 |
ctgtcctgg |
810 |
Q |
| |
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||||||||| |
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| T |
2443339 |
ctgtcctgg |
2443331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 182 - 451
Target Start/End: Complemental strand, 12220772 - 12220501
Alignment:
| Q |
182 |
atgctcgcctttatggcgaagacagttacatgattaatgtcggctcaatgcaagttaggtatata-----tatatttttaatcaaattaactacgtattt |
276 |
Q |
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||||||| ||||||||| ||| || ||||||||||||||||||||||||||| |||| ||| || | | |||||||||||| ||| ||| ||||| |
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| T |
12220772 |
atgctcgtctttatggctaagtcaattacatgattaatgtcggctcaatgcaggttacatatttactttttgtctttttaatcaaactaattacatattt |
12220673 |
T |
|
| Q |
277 |
atttagaaggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggttaaaagttgtgg |
376 |
Q |
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||| |||||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||||||||| ||| |||||||||| ||||||||| | |
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| T |
12220672 |
attcagaaggtgttgcatatagatgat---agattgaataacttggagaagtgggtttttgagtcaatttggaagagtccggctcggtcaaaagttgtag |
12220576 |
T |
|
| Q |
377 |
ttttttcttggactcttcttctagactgtattccaacgtgttcaaatcttgcatttggaaacgttttggatcaca |
451 |
Q |
| |
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|||||||||||||||||||||||| | |||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
12220575 |
ctttttcttggactcttcttctagattaaattccaactcggttaaatcttgcatttggaaacgttttggatcaca |
12220501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 7424284 - 7424457
Alignment:
| Q |
22 |
agcacaaaaatatggtgaaattagttacttgaatatggtactattacctaggtgagttttaaggtggatgaccatgataaggggtccatggtaaaccaat |
121 |
Q |
| |
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||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||| | |||| |||| |
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| T |
7424284 |
agcacgaaaatatgatgaaattagttacttggatatggtagtattacctaggtgagttttaaggtgtatgaccttgataagtagtccacgataaatcaat |
7424383 |
T |
|
| Q |
122 |
acataaaaatcatccaagatgtcggcgatattcttcaaaggatgaaaattactcatgatcatgctcgcctttat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| |
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| T |
7424384 |
acataaaaatcatccaagatgtcggcgatattcttcaaaagataaaaattactcatgattatgcacgtctttat |
7424457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 12221302 - 12221145
Alignment:
| Q |
39 |
aaattagttacttgaatatggtactattacctaggtgagttttaaggtggatgaccatgataaggggtccatggtaaaccaatacataaaaatcatccaa |
138 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
12221302 |
aaattagttacttggatatggtacaattacctaggtgagttttaaggtggatgaccttgataagtggtccacggtaaaccaatacaaaaaaatcatccaa |
12221203 |
T |
|
| Q |
139 |
gatgtcggcgatattcttc-aaaggatgaaaattactcatgatcatgctcgcctttat |
195 |
Q |
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||||||| | ||||||||| ||| ||||||||||||||||||| |||| || |||||| |
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| T |
12221202 |
gatgtcgtcaatattcttcaaaaagatgaaaattactcatgattatgcccgtctttat |
12221145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 190 - 386
Target Start/End: Original strand, 7424906 - 7425104
Alignment:
| Q |
190 |
ctttatggcgaagacagttacatgattaatgtcggctcaatgcaagttaggtatatatatatt-----tttaatcaaattaactacgtatttatttagaa |
284 |
Q |
| |
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||||||||| |||||||||||||||||||| ||| |||||||||||||| ||| ||| | || |||||||||| ||| ||| | ||||| |||| |
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| T |
7424906 |
ctttatggctaagacagttacatgattaatatcgtctcaatgcaagttacatatttattttttgtcgttttaatcaaactaattacatgcttattcagaa |
7425005 |
T |
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| Q |
285 |
ggtgttgcttatagatgatgataggttgaataacttggagaagtggatgtttgagtcaatttggaggagcccggctcggttaaaagttgtggttttttct |
384 |
Q |
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|| |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
7425006 |
ggagttgcttatagatgat---agattgaataacttggagaagtgggtgtttgagtcaatttggaagagcccggctcggtcaaaagttgtggctttttct |
7425102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 893 - 978
Target Start/End: Original strand, 9603400 - 9603485
Alignment:
| Q |
893 |
ttcatttctgtttcggtacttgagttgataatggtaggctgtgttccgctaatagtgatgtcgcttatatatggcattgtgtaggt |
978 |
Q |
| |
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||||||||||||||||| |||||||| | |||||||| ||||| | |||||||||||||||||||||| ||||||| ||||| |
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| T |
9603400 |
ttcatttctgtttcggtgcttgagttattggcggtaggctatgttcagataatagtgatgtcgcttatatactgcattgtctaggt |
9603485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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