View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_22 (Length: 417)

Name: NF14366_high_22
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_22
NF14366_high_22
[»] chr4 (21 HSPs)
chr4 (29-402)||(5572988-5573361)
chr4 (29-402)||(5585195-5585568)
chr4 (121-321)||(5557055-5557255)
chr4 (119-326)||(5603536-5603743)
chr4 (119-321)||(5562838-5563040)
chr4 (119-310)||(5611654-5611845)
chr4 (119-310)||(5849946-5850137)
chr4 (119-321)||(5888146-5888348)
chr4 (119-324)||(5856183-5856388)
chr4 (119-306)||(5897024-5897211)
chr4 (119-321)||(5551285-5551487)
chr4 (119-320)||(5891158-5891358)
chr4 (122-321)||(5854911-5855109)
chr4 (329-403)||(5854805-5854879)
chr4 (329-402)||(5611885-5611958)
chr4 (350-402)||(5563090-5563142)
chr4 (338-394)||(3747275-3747331)
chr4 (333-402)||(5557288-5557357)
chr4 (350-402)||(5888053-5888105)
chr4 (225-324)||(253677-253776)
chr4 (338-397)||(5603776-5603835)
[»] chr8 (2 HSPs)
chr8 (118-310)||(1481277-1481469)
chr8 (342-402)||(1481522-1481582)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 29 - 402
Target Start/End: Complemental strand, 5573361 - 5572988
Alignment:
Q  29 ttattgatttttaacgttaacaaacaatatggtttttaagagaaaacatgaaattatactactaattaggacactcattagtcgctaatgccaccttaaa 128  Q
    ||||| ||||||||||||||||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573361 ttatttatttttaacgttaacaaacaacatggttggtaatagaaaacattaaattatactactaattaggacactcattagtcgctaatgccaccttaaa 5573262  T
Q  129 actatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573261 actatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctcc 5573162  T
Q  229 attgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagatagcaa 328  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5573161 attgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaacaagatagcaa 5573062  T
Q  329 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5573061 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 5572988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 29 - 402
Target Start/End: Complemental strand, 5585568 - 5585195
Alignment:
Q  29 ttattgatttttaacgttaacaaacaatatggtttttaagagaaaacatgaaattatactactaattaggacactcattagtcgctaatgccaccttaaa 128  Q
    ||||| ||||||||||||||||||||| ||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5585568 ttatttatttttaacgttaacaaacaacatggttggtaatagaaaacattaaattatactactaattaggacactcattagtcgctaatgccaccttaaa 5585469  T
Q  129 actatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5585468 actatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatcttatcctcc 5585369  T
Q  229 attgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagatagcaa 328  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5585368 attgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaacaagatagcaa 5585269  T
Q  329 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5585268 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 5585195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 121 - 321
Target Start/End: Original strand, 5557055 - 5557255
Alignment:
Q  121 accttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatct 220  Q
    ||||||||||| ||||||| ||||||||||  || |||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||| ||||  |    
T  5557055 accttaaaactgtgtatgtttgtcctctatcagtaacatattcaagatacatccttgaaaagatccagcaaagaattttgtccacaagtttcaaataatt 5557154  T
Q  221 tatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaa 320  Q
    || ||||||||||||||||||||| |  |||| |||||| |||||||  ||||| ||||| |||| ||||||||||| ||||||||||||  ||||||||    
T  5557155 taccctccattgcttccaaaacattatgggacaaatgactattccgaatccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaa 5557254  T
Q  321 g 321  Q
    |    
T  5557255 g 5557255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 119 - 326
Target Start/End: Original strand, 5603536 - 5603743
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||||||||||||| || ||||| | |||||||||||| | ||  |||||||| || |||||||||||| |||| ||||| |||||||||||     
T  5603536 ccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatac 5603635  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaac 318  Q
     ||| |||||| ||||||||||||||||  |||  |||||||||||| || |||||||  || |||||||| ||||||| ||||||||||||  ||||||    
T  5603636 tttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaac 5603735  T
Q  319 aagatagc 326  Q
    ||| ||||    
T  5603736 aagctagc 5603743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 5562838 - 5563040
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatcct-tgaaaagatccagcaaagaattttatccactagtttccaata 217  Q
    ||||||||||| | ||||||||||||||||||  ||| ||||||||| ||| ||||| || ||| ||| | || |||||||| || || |||||||||||    
T  5562838 ccaccttaaaattctgtatgtctgtcctctatcagttgcatattcaaaatgcatcctctggaaa-atcaaacagagaattttgtctacgagtttccaata 5562936  T
Q  218 tcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaa 317  Q
     ||||  ||||||| ||||||||||| ||| ||||||| ||  |||||||| ||||||||||| |||||||| ||||||||||||||||||||  |||||    
T  5562937 acttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacacttaaaaaattccagtcaattgaa 5563036  T
Q  318 caag 321  Q
    ||||    
T  5563037 caag 5563040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 5611654 - 5611845
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||||| ||| |||||   ||| ||| | || |||||||| || || |||||||||||     
T  5611654 ccaccttaaaattgtgtatgtctgtcctctatcagttacatattcaaaatgcatcctccgaaaaatcaaacagagaattttgtctacgagtttccaataa 5611753  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtc 310  Q
    ||||  ||||||| |||||||||||  |||||||| ||||  |||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  5611754 cttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtc 5611845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 119 - 310
Target Start/End: Complemental strand, 5850137 - 5849946
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||| | ||||||||||||||||||  ||| ||||||||| ||  || |||   |||||||| || |||||||| || || |||||||||||     
T  5850137 ccaccttaaaattctgtatgtctgtcctctatcagttgcatattcaaaatacattcttcggaagatccaacatagaattttgtctacgagtttccaataa 5850038  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtc 310  Q
    ||||  ||||||| ||||||||||| ||| |||   |||| ||||||||| ||||||||||| ||||| || ||||||||||||||||||||    
T  5850037 cttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtc 5849946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 119 - 321
Target Start/End: Complemental strand, 5888348 - 5888146
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||||| ||| |||||    || ||| | || |||||||| || || |||||||||||     
T  5888348 ccaccttaaaattctgtatgtctgtcctctatcagttacatattcaaaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttccaataa 5888249  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaac 318  Q
    ||||  ||||||| ||||||||||| ||| ||||||| ||  ||||| || ||||||| ||| |||||||| ||||||||||||||||| ||  ||||||    
T  5888248 cttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaattgaac 5888149  T
Q  319 aag 321  Q
    |||    
T  5888148 aag 5888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 5856183 - 5856388
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||||| |||| || |||||||  ||  |||||||||||| ||| ||||  |  || ||||||||||||||||| ||||  |||||||||||     
T  5856183 ccaccttaaaactgtgtaagtttgtcctccttgttttacatattcaaaatgcatccaagggaatatccagcaaagaattttgtccatgagtttccaataa 5856282  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaac 318  Q
    | || |||||||||||||||||||||||  |||||||| ||| |||| || ||||||| ||| || | ||| ||||||||||||||||| ||  || |||    
T  5856283 cctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacacttaaaaaattccaatcaattaaac 5856382  T
Q  319 aagata 324  Q
    ||||||    
T  5856383 aagata 5856388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 119 - 306
Target Start/End: Complemental strand, 5897211 - 5897024
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||| | ||||||||||||||||||  ||||||||||||| ||| |||||    || ||| | || |||||||| || || |||||||||||     
T  5897211 ccaccttaaaattctgtatgtctgtcctctatcagttacatattcaaaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttccaataa 5897112  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattcc 306  Q
    ||||  ||||||| ||||||||||| ||| ||||||| ||  ||||| || ||||||| ||| |||||||| ||||||||||||||||    
T  5897111 cttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattcc 5897024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 321
Target Start/End: Original strand, 5551285 - 5551487
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||  | |||||||||||| |||||  ||| ||||||||| ||  ||||||   |||||||  || |||||||| ||  | |||||||||||     
T  5551285 ccaccttaaagttctgtatgtctgtcatctatcagttgcatattcaaaatacatcctttggaagatccgacagagaattttgtctgcgagtttccaatag 5551384  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaac 318  Q
    ||||  ||||||| ||||||||||| ||| ||||  ||||  ||||| || ||||||||||| ||||| || ||||||||||||||||||||  ||||||    
T  5551385 cttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaac 5551484  T
Q  319 aag 321  Q
    |||    
T  5551485 aag 5551487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 320
Target Start/End: Complemental strand, 5891358 - 5891158
Alignment:
Q  119 ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat 218  Q
    ||||||||||| | ||||||||| ||||||||   |||||||||||| ||| |||||    || ||| | || ||||| || || || |||||||||||     
T  5891358 ccaccttaaaattttgtatgtctttcctctatcaattacatattcaaaatgcatcctccggaaaatcaaacagagaatcttgtctacgagtttccaataa 5891259  T
Q  219 cttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaac 318  Q
    ||||  ||||||| |||||||| || ||| ||||||||||  |||||||  ||||||||||| ||||| || ||||||||||||||||| ||  ||||||    
T  5891258 cttactctccatttcttccaaa-caagaggggaccaatgatgattccgaacccaaaaacaaatcccaactccacacttaaaaaattccaatcaattgaac 5891160  T
Q  319 aa 320  Q
    ||    
T  5891159 aa 5891158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 321
Target Start/End: Complemental strand, 5855109 - 5854911
Alignment:
Q  122 ccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatatctt 221  Q
    |||||||| | ||||||||||||||||||  ||| ||||||||| ||  ||||||   |||||||| || | |||||| || ||  |||||||||| | |    
T  5855109 ccttaaaattctgtatgtctgtcctctatcagttgcatattcaaaatacatccttcggaagatccaacagataatttt-tctacgcgtttccaataacat 5855011  T
Q  222 atcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaag 321  Q
    |  |||||| |||||||||||| |   ||||||||||  |||||||| ||||||||||| ||||| || | ||| ||||||||||||||  |||||||||    
T  5855010 actctccatcgcttccaaaacaaggtgggaccaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaag 5854911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 5854879 - 5854805
Alignment:
Q  329 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaagt 403  Q
    |||||| | ||||||||||| ||||||||||| || ||||||||||||||||||||  ||||||||||| |||||    
T  5854879 ctcatcctgccttttaccatttggtttttcaggcagtggaggtccatatagcccattgtttccttcaaacgaagt 5854805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 5611885 - 5611958
Alignment:
Q  329 ctcatcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    |||||| | ||||||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||    
T  5611885 ctcatcctgccttttaccatttggtgtttcagtcaacggaggtccatatagcccattattcccttcaaatgaag 5611958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 5563090 - 5563142
Alignment:
Q  350 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  5563090 tggtgtttcagttaatggaggtccatatagcccatcatttccttcaaaggaag 5563142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 3747275 - 3747331
Alignment:
Q  338 ccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttc 394  Q
    |||| |||||||||||||||||||||| ||||| |||||||| |||| |||||||||    
T  3747275 ccttataccatctggtttttcagtcaacggaggaccatatagaccataatttccttc 3747331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 402
Target Start/End: Original strand, 5557288 - 5557357
Alignment:
Q  333 tcattccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    |||| ||||||||||||| || || | ||||||||||| |||||||| |||||||| |||||||| ||||    
T  5557288 tcatgccttttaccatctagtcttaccgtcaatggaggaccatatagtccatcattaccttcaaatgaag 5557357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 5888105 - 5888053
Alignment:
Q  350 tggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||    
T  5888105 tggtgtttcagttaatggaggtccatataggccatcattaccttcaaacgaag 5888053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 253776 - 253677
Alignment:
Q  225 ctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtctgttgaacaagata 324  Q
    |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||||||||| ||  ||||||||||||    
T  253776 ctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagata 253677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 5603776 - 5603835
Alignment:
Q  338 ccttttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaa 397  Q
    ||||||| ||| |||||||| |||| | ||||| |||||||||||||| |||||||||||    
T  5603776 ccttttatcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaa 5603835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 310
Target Start/End: Original strand, 1481277 - 1481469
Alignment:
Q  118 gccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaata 217  Q
    |||||||||||||| ||||||| ||||||||||  ||| ||||||||||||  ||||||||||||||||||||||||||||| ||||| | || ||||||    
T  1481277 gccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagattcatccttgaaaagatccagcaaagaattttgtccacaacttgccaata 1481376  T
Q  218 tcttatcctccattgcttccaaaacatgagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaaattccagtc 310  Q
     |||| |||||||||||||||| |||||| |||| | ||||  ||||| || || |||| ||| || ||||| ||||||| ||||||||||||    
T  1481377 ccttaccctccattgcttccaagacatgataggaacgatgatgattcctagtccgaaaataaatcctaattccacacttagaaaattccagtc 1481469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 1481522 - 1481582
Alignment:
Q  342 ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaaagaag 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1481522 ttaccatctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatgaag 1481582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University