View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_24 (Length: 399)
Name: NF14366_high_24
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 37331253 - 37331624
Alignment:
| Q |
11 |
cacagagtactagattataaagatctcatgtgcgtacttggttggtgctccctcttaactcgcagggacaacttgcaggttttgttgttgatgaggcaca |
110 |
Q |
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| T |
37331253 |
cacagagtactagattataaagatctcatgtgcgtatttggttggtgctccctcttaactcgcagggacaacttgcaggttttgttgttgatgaggcaca |
37331352 |
T |
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| Q |
111 |
ctgtgttaggtatgcattgtgcttttcatgtacagttgcagtgattatttttctttcatcaatgagtgcaattgaatgaaattctgagacataactttgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37331353 |
ctgtgttaggtatgcattgtgcttttcatgtacagttgcagtgattatttttctttcatcaatgagtgcaattgaatgaaattctgagacataactttgt |
37331452 |
T |
|
| Q |
211 |
tagaaataaaaccttcttgaagtagctcttcccatgtgcctctgatatgtctgtctcatgctgatcaaacaatatgaacaagctccaaaattttaattac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37331453 |
tagaaataaaaccttcttgaagtagctcttcccatgtgcctctgatatgtctgtctcatgctgatcaaacaatatgaacaagctccaaaattttaattac |
37331552 |
T |
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| Q |
311 |
cagtgaagtgtcatggttcataaatgtcattttgaattgagctttcgtggtggccattaaggaggcagatca |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37331553 |
cagtgaagtgtcatggttcataaatgtcattttgaattgagctttcgtggtggccattaaggaggcagatca |
37331624 |
T |
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