View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_25 (Length: 377)
Name: NF14366_high_25
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 45794518 - 45794337
Alignment:
| Q |
14 |
aggccctggtgcaagaaatgatatgagggttcattgggagagttatagaacaaattctcagaattggaaaagtgaaatgatgagttttacagctgctgag |
113 |
Q |
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| T |
45794518 |
aggccctggtgcaagaaatgatatgagggttcattgggagagttatagaacaaattctcagaattggaaaagtgaaatgatgagttttacagctgctgag |
45794419 |
T |
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| Q |
114 |
tttattcaagcaaaccaatggttgacaaatacaggcattccatatgaatctggttttttctttcataaatagaataatgtta |
195 |
Q |
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| T |
45794418 |
tttattcaagcaaaccaatggttgacaaatacaggcattccatatgaatctggttttttctttcataaatagaataatgtta |
45794337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 45794267 - 45794184
Alignment:
| Q |
279 |
ttgaatgtcacagtgttaatttattctgtccacaaattgaatgttccaactatattaatatgagtattgtttaagcattgtttt |
362 |
Q |
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| T |
45794267 |
ttgaatgtcacagtgttaatttattctgtccacaaattgaatgttccaactatattaatatgagtattgtttaagcattgtttt |
45794184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 45794323 - 45794283
Alignment:
| Q |
223 |
gacggatagtagtcattaaa-tgaatgtcacagtcttaacc |
262 |
Q |
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| T |
45794323 |
gacggatagtagtcattaaattgaatgtcacagtcttaacc |
45794283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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