View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_26 (Length: 376)
Name: NF14366_high_26
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 83 - 368
Target Start/End: Complemental strand, 42957250 - 42956965
Alignment:
| Q |
83 |
gctttaaaaaattgaataatcagattctaacaaactttgaataaaaaagctttgcaattgaacaaattaaaatagaagagggaaacagcgaatgaaaatc |
182 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42957250 |
gctttaaaaaattgaataatcagattgtaacaaactttgaataaaaaagctttgcaattgaacaaattaaaatagaagagggaaacaacgaatgaaaatc |
42957151 |
T |
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| Q |
183 |
taattgtaaataacctcttcataattatagtgttgagacgatgcgccaacacggaagtaggaaaatgtagccaatcgtccccttccatcatggagttagg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42957150 |
taattgtaaataacctcttcataattatagtgttgagacgatgcgccaacacggaattaggaaaatgtagccaatcgtccccttccatcatgaagttagg |
42957051 |
T |
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| Q |
283 |
tgttctgtcgcagccactgaatgctatggcaaccattggctctagtatagcatatggagcctccatatatcatcatccattcatct |
368 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
42957050 |
tgttctgccgcaaccactgaatgctatggcaaccattggctctagtataacatatggagcctccatatttcatcatccattcatct |
42956965 |
T |
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Back To:
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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 252 - 368
Target Start/End: Original strand, 42564086 - 42564202
Alignment:
| Q |
252 |
gccaatcgtccccttccatcatggagttaggtgttctgtcgcagccactgaatgctatggcaaccattggctctagtatagcatatggagcctccatata |
351 |
Q |
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||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||| |||| |
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| T |
42564086 |
gccaatcatccccttccatcatggagttaggtgttatgctgcagccactaaatgctatggaaaccattggctctggtatggcatatggagcctccttata |
42564185 |
T |
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| Q |
352 |
tcatcatccattcatct |
368 |
Q |
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||||| ||||||||||| |
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| T |
42564186 |
tcatcctccattcatct |
42564202 |
T |
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