View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_27 (Length: 371)

Name: NF14366_high_27
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_27
NF14366_high_27
[»] chr4 (17 HSPs)
chr4 (1-192)||(37864932-37865113)
chr4 (282-358)||(56138301-56138377)
chr4 (282-358)||(958542-958618)
chr4 (282-358)||(44561278-44561354)
chr4 (282-358)||(42885498-42885576)
chr4 (294-358)||(34530743-34530807)
chr4 (294-358)||(39588127-39588191)
chr4 (294-358)||(34154376-34154440)
chr4 (294-358)||(51429277-51429341)
chr4 (294-358)||(56304911-56304975)
chr4 (282-344)||(4786296-4786358)
chr4 (294-356)||(6283417-6283479)
chr4 (282-340)||(29700268-29700326)
chr4 (266-354)||(1041965-1042056)
chr4 (288-355)||(243296-243363)
chr4 (282-356)||(21017951-21018028)
chr4 (293-356)||(28081518-28081582)
[»] chr7 (13 HSPs)
chr7 (266-358)||(40587691-40587786)
chr7 (217-356)||(30355189-30355339)
chr7 (281-358)||(46863292-46863369)
chr7 (294-358)||(21188374-21188438)
chr7 (282-355)||(28980123-28980196)
chr7 (282-358)||(36394886-36394962)
chr7 (282-358)||(41047826-41047902)
chr7 (282-358)||(17838699-17838776)
chr7 (282-358)||(42682043-42682119)
chr7 (294-358)||(34139932-34139996)
chr7 (288-354)||(43686859-43686925)
chr7 (292-358)||(28115480-28115546)
chr7 (302-358)||(48269710-48269766)
[»] chr3 (23 HSPs)
chr3 (282-356)||(41803047-41803121)
chr3 (282-358)||(43476241-43476317)
chr3 (267-358)||(13896824-13896918)
chr3 (283-358)||(34694382-34694457)
chr3 (282-356)||(51402348-51402422)
chr3 (292-356)||(55207613-55207677)
chr3 (282-358)||(55385186-55385262)
chr3 (287-358)||(51696522-51696593)
chr3 (282-347)||(24703374-24703439)
chr3 (294-358)||(19454299-19454363)
chr3 (268-358)||(41577107-41577200)
chr3 (283-358)||(52570514-52570589)
chr3 (292-358)||(45101796-45101862)
chr3 (291-358)||(43568924-43568991)
chr3 (283-358)||(49609433-49609508)
chr3 (296-358)||(7245155-7245217)
chr3 (282-358)||(4004750-4004827)
chr3 (282-358)||(36134372-36134449)
chr3 (298-354)||(41137773-41137829)
chr3 (308-358)||(2426559-2426609)
chr3 (294-358)||(2271260-2271325)
chr3 (282-358)||(49219739-49219815)
chr3 (282-358)||(34648150-34648228)
[»] chr2 (10 HSPs)
chr2 (283-358)||(24512217-24512292)
chr2 (285-358)||(2920464-2920537)
chr2 (267-356)||(41500184-41500276)
chr2 (282-358)||(43491158-43491234)
chr2 (282-358)||(2648166-2648242)
chr2 (282-352)||(10365746-10365816)
chr2 (271-358)||(39393072-39393162)
chr2 (295-358)||(40679545-40679608)
chr2 (294-358)||(29093779-29093840)
chr2 (282-358)||(34638189-34638262)
[»] chr1 (18 HSPs)
chr1 (283-358)||(29763167-29763242)
chr1 (287-358)||(42572705-42572776)
chr1 (294-358)||(14174859-14174923)
chr1 (294-358)||(27487614-27487678)
chr1 (283-358)||(29709259-29709334)
chr1 (294-356)||(49927451-49927513)
chr1 (282-358)||(6434797-6434873)
chr1 (282-358)||(13972111-13972187)
chr1 (303-358)||(26637204-26637259)
chr1 (285-358)||(29435025-29435097)
chr1 (287-344)||(49395657-49395714)
chr1 (294-358)||(13147557-13147621)
chr1 (296-358)||(49426750-49426813)
chr1 (294-351)||(24364680-24364737)
chr1 (294-358)||(44596896-44596960)
chr1 (321-358)||(41779767-41779804)
chr1 (282-356)||(19159672-19159750)
chr1 (298-358)||(51269003-51269063)
[»] chr6 (11 HSPs)
chr6 (282-358)||(12783905-12783981)
chr6 (294-358)||(29061331-29061395)
chr6 (294-358)||(32034340-32034404)
chr6 (292-358)||(13401545-13401611)
chr6 (296-358)||(29065791-29065853)
chr6 (296-358)||(29074804-29074866)
chr6 (296-358)||(29079568-29079630)
chr6 (296-358)||(29107377-29107439)
chr6 (315-358)||(17596764-17596807)
chr6 (294-351)||(26855956-26856013)
chr6 (267-356)||(30258263-30258357)
[»] chr5 (10 HSPs)
chr5 (282-358)||(18307303-18307379)
chr5 (292-358)||(542738-542804)
chr5 (282-358)||(25497560-25497636)
chr5 (294-356)||(42865754-42865816)
chr5 (282-358)||(11346056-11346133)
chr5 (287-358)||(35564315-35564386)
chr5 (282-358)||(3600386-3600462)
chr5 (283-358)||(8537215-8537291)
chr5 (293-344)||(20192413-20192464)
chr5 (321-358)||(1401388-1401425)
[»] chr8 (8 HSPs)
chr8 (282-354)||(26451529-26451601)
chr8 (282-358)||(41274641-41274717)
chr8 (283-358)||(18441389-18441464)
chr8 (267-356)||(41858073-41858163)
chr8 (294-358)||(3395927-3395991)
chr8 (294-358)||(22547504-22547568)
chr8 (282-356)||(42602509-42602583)
chr8 (299-358)||(24860448-24860507)
[»] scaffold0199 (1 HSPs)
scaffold0199 (282-358)||(12335-12412)
[»] scaffold0192 (1 HSPs)
scaffold0192 (287-358)||(18847-18918)
[»] scaffold0176 (1 HSPs)
scaffold0176 (294-358)||(857-921)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 37864932 - 37865113
Alignment:
Q  1 ctgggaacggcgtttctcagagaagacatgtcgtatcaggttttacttcgcggtgatttctacggtggaggacggtggaggacggtggcttctgtattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||          |||||||||||||||||||||||||    
T  37864932 ctgggaacggcgtttctcagagaagacatgtcgtatcaggttttacttcacggtgatttctacgg----------tggaggacggtggcttctgtattca 37865021  T
Q  101 ctttctgtgaccttgagtgagcgactgtttagggtttaaaacgcaaagtccagcaccgatatgtaatccatcaaattaagaggatgggggtt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37865022 ctttctgtgaccttgagtgagcgactgtttagggtttaaaacgcaaagtccagcaccgatatgtaatccatcaatttaagaggatgggggtt 37865113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 56138301 - 56138377
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  56138301 gaaaacctcagtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 56138377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 958618 - 958542
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||||||||| |||||    
T  958618 gaaaacctcggtagttaactgccgaggatcttctgctacaaatccggcagaagctctctcatccattattcttctca 958542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 44561354 - 44561278
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| ||| ||||||||||||||| |||| | ||||| |||||||||||| |||||||||||||||||||||||||    
T  44561354 gaaaatctcggtagttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctca 44561278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 42885498 - 42885576
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaa--tctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| | |||||||||||||||||||| ||||| |||  ||||||||| |||||||||||||||||||||||||    
T  42885498 gaaaacctcggcagttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctca 42885576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 34530807 - 34530743
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||| ||||||| |||||||||||||||||||||||||    
T  34530807 agttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattcatctca 34530743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 39588127 - 39588191
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||| ||||||| |||||||||||||||||||||||||    
T  39588127 agttaactgccgaggatcttctgctacaaatatggcagaagctctctcatccattattcatctca 39588191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 34154440 - 34154376
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||| || |||||| ||||| |||||||||||| ||||||||||| |||||||||||||    
T  34154440 agttaactgcagaggatcttctgctacaaatctggcagaagctctctcatctattattcatctca 34154376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 51429341 - 51429277
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||| |||||| ||||| |||||||| ||| |||||||||||||||||||||||||    
T  51429341 agttaactgtcgaggatcttctgctacaaatctggaagaagctctctcatccattattcatctca 51429277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 56304911 - 56304975
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| |||||| ||| || ||||| |||||||||||| |||||||||||||||||||||||||    
T  56304911 agttaattgccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctca 56304975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 4786358 - 4786296
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatc 344  Q
    ||||||||| || ||||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  4786358 gaaaacctcggttgttaactgccgatgatcttctgctacaaatctggtagaagctctctcatc 4786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 6283479 - 6283417
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||||||| |||||| ||||  ||||||||| || |||||||||||||||||||||||    
T  6283479 agttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 29700326 - 29700268
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctct 340  Q
    ||||||||| |||||||| ||||||||||||| ||||| |||||||||||| |||||||    
T  29700326 gaaaacctcggtagttaattgccgatgatcttctgctacaaatctggcagaagctctct 29700268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 1041965 - 1042056
Alignment:
Q  266 actgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcat 354  Q
    |||||||||||||| |||   ||| ||| ||||||||||||||| |||||| | ||| |||||||||| | |||||||||| |||| |||||    
T  1041965 actgcagttaactgccgagaaaaatctcggtagttaactgccgaggatcttctactacaaatctggcataagctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 243363 - 243296
Alignment:
Q  288 ctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatc 355  Q
    ||||| ||||||||| ||| |||||| || || |||||||||||| |||||||||  |||||||||||    
T  243363 ctcagcagttaactgtcgaggatcttctgttacaaatctggcagaagctctctcactcattattcatc 243296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 21018028 - 21017951
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatctttt--gctataaatctggcagatgct-ctctcatccattattcatct 356  Q
    ||||||||| | |||||||||||||||||||| |  |||| ||||||||||||  || |||||||| |||||||||||    
T  21018028 gaaaacctcggcagttaactgccgatgatcttctgagctacaaatctggcagaatctcctctcatctattattcatct 21017951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 356
Target Start/End: Original strand, 28081518 - 28081582
Alignment:
Q  293 tagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatct 356  Q
    ||||||| || ||| |||||| ||||| ||||||||||||  || ||||||||||||||||||||    
T  28081518 tagttaagtgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatct 28081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 358
Target Start/End: Original strand, 40587691 - 40587786
Alignment:
Q  266 actgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||||||   ||||||||||||||||||||||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||    
T  40587691 actgcagttaactgtcgaggaaaacctcagtagttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctca 40587786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 356
Target Start/End: Complemental strand, 30355339 - 30355189
Alignment:
Q  217 cgagtaaaatacgcttttgttcc-tcggcagttaattgttgaa---tttaaaaa----ctgcagttaactgtcga---aaacctcagtagttaactgccg 305  Q
    |||||||||||||||||||  || |||||||||||||| ||||   || |||||    ||||||||||||| |||   ||||||| ||||||||||||||    
T  30355339 cgagtaaaatacgcttttgccccctcggcagttaattgctgaagaattcaaaaatcggctgcagttaactgccgaggaaaacctcggtagttaactgccg 30355240  T
Q  306 atgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    | |||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  30355239 aggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 281 - 358
Target Start/End: Complemental strand, 46863369 - 46863292
Alignment:
Q  281 cgaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| ||| ||||||||||||||| |||||| ||||| |||||||||||| ||||| |||||||||||||||||||    
T  46863369 cgaaaatctctgtagttaactgccgaagatcttctgctacaaatctggcagaagctctttcatccattattcatctca 46863292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 21188438 - 21188374
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  21188438 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 21188374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 28980196 - 28980123
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatc 355  Q
    ||||||||| ||||||||||||||| ||| || ||||| ||||||| |||| ||||||||||||||||||||||    
T  28980196 gaaaacctcggtagttaactgccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 36394962 - 36394886
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| |||||||||| |||| |||||| ||||| |||||||||||| |||||||||||| ||||| ||||||    
T  36394962 gaaaacctcggtagttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccgttattaatctca 36394886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 41047826 - 41047902
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| || ||||||||||||||| |||||| ||||| ||||||||  || |||||||||||||||||||||||||    
T  41047826 gaaaacttcggtagttaactgccgaggatcttctgctacaaatctggaggaagctctctcatccattattcatctca 41047902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 17838699 - 17838776
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    |||||||||  |||||||||||||| |||||| ||||| ||||||||||||  || ||||||||||||||||||||||    
T  17838699 gaaaacctcgatagttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 17838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 42682043 - 42682119
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||| ||||||||||| |||||| ||||| |||||| ||| | | |||||||||||||||||||||||    
T  42682043 gaaaacctcggtaattaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctca 42682119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 34139932 - 34139996
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| ||||||   ||| |||||||||||| ||||||| |||||||||||||||||    
T  34139932 agttaactgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctca 34139996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 43686925 - 43686859
Alignment:
Q  288 ctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcat 354  Q
    |||||||||||||||||||  || || ||||| ||||||| || | |||||||||||||||||||||    
T  43686925 ctcagtagttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 28115546 - 28115480
Alignment:
Q  292 gtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||  || | |||| ||||| |||||| ||| | |||||||||||||||||||||||||    
T  28115546 gtagttaactgttgagggtcttctgctacaaatctagcataagctctctcatccattattcatctca 28115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 48269710 - 48269766
Alignment:
Q  302 gccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| |||||| ||||| ||||||| || | | |||||||||||||||||||||||    
T  48269710 gccgaggatcttctgctacaaatctgacaaaagttctctcatccattattcatctca 48269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 41803047 - 41803121
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||    
T  41803047 gaaaacctcggtagttaactgccgaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 43476241 - 43476317
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  43476241 gaaaacctcggtagttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctca 43476317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 358
Target Start/End: Complemental strand, 13896918 - 13896824
Alignment:
Q  267 ctgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||||||||   ||||||| ||||||||||||||| ||| || | ||| |||||||||||| |||||||||||||||||||||||||    
T  13896918 ctgcagttaactgtcgaggaaaacctcggtagttaactgccgaagattttctactacaaatctggcagaagctctctcatccattattcatctca 13896824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 34694457 - 34694382
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| | ||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  34694457 aaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 34694382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 282 - 356
Target Start/End: Complemental strand, 51402422 - 51402348
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||| ||||||||||||||| |||||| ||||| ||||||| |||| |||||||||||||||||||||||    
T  51402422 gaaaacctcggtagttaactgccgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 55207677 - 55207613
Alignment:
Q  292 gtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  55207677 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 55385186 - 55385262
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||| ||| |||||| ||||| |||||||||||| |||||||||||||||||| ||||||    
T  55385186 gaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctca 55385262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 51696593 - 51696522
Alignment:
Q  287 cctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| ||||||||||||||| |||||| ||||  |||||||||||| |||||||||||||||||||||||||    
T  51696593 cctcggtagttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctca 51696522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 24703439 - 24703374
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccat 347  Q
    |||| |||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||    
T  24703439 gaaatcctcaggagttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 19454363 - 19454299
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| | ||| |||||||||||| |||||||||||||||||||||||||    
T  19454363 agttaactgccgaggatcttctactacaaatctggcagaagctctctcatccattattcatctca 19454299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 358
Target Start/End: Original strand, 41577107 - 41577200
Alignment:
Q  268 tgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||||   |||| || ||||| ||||||||| |||||| ||||| |||||| ||||| ||||||||||||||||| |||||||    
T  41577107 tgcagttaactgtcgacaaaaacttcggtagtaaactgccgaggatcttctgctacaaatcttgcagaagctctctcatccattatccatctca 41577200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 52570589 - 52570514
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| ||||||||||||||| |||||| | ||| ||||||||||||  ||||||||| ||||||||||||||    
T  52570589 aaaacctcggtagttaactgccgaggatcttctactacaaatctggcagaaactctctcattcattattcatctca 52570514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 45101862 - 45101796
Alignment:
Q  292 gtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||| |||||| ||||| |||||||||||| ||||||||||  |||||||||||||    
T  45101862 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctca 45101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 358
Target Start/End: Original strand, 43568924 - 43568991
Alignment:
Q  291 agtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| || |||||| || || ||||||| |||| |||||||||||||||||||||||||    
T  43568924 agtagttaactgctgaggatcttctgttacaaatctgacagaagctctctcatccattattcatctca 43568991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 49609433 - 49609508
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| ||||||||||||||| || ||| ||||| |||||||||| | ||||||| || ||||||||||||||    
T  49609433 aaaacctcggtagttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctca 49609508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 7245155 - 7245217
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||  ||||| ||||| ||||||| |||| |||||||||||||||||||||||||    
T  7245155 ttaactgccgagtatcttctgctacaaatctgacagaagctctctcatccattattcatctca 7245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 4004827 - 4004750
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||| ||| ||||||||||| |||||| ||||| ||| ||||||||  || ||||||||||||||||||||||    
T  4004827 gaaaacctcggtacttaactgccgaggatcttctgctacaaacctggcagaatctcctctcatccattattcatctca 4004750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 36134372 - 36134449
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||| | ||||||||||||| |||||| ||||| ||||||||||||  || |||| |||||||||||||||||    
T  36134372 gaaaacctcgggagttaactgccgaggatcttctgctacaaatctggcagaatctcctcttatccattattcatctca 36134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 41137773 - 41137829
Alignment:
Q  298 aactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcat 354  Q
    |||| |||| |||||| ||||| |||||||||||| |||||||||||||||||||||    
T  41137773 aactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 41137829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 2426559 - 2426609
Alignment:
Q  308 gatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| |||||||||| ||||||| |||||||||| ||||||||||||||    
T  2426559 gatcttctgctataaatttggcagaagctctctcattcattattcatctca 2426609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 2271325 - 2271260
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| ||||||||||||  || ||||||||||| ||||||||||    
T  2271325 agttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccataattcatctca 2271260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 49219815 - 49219739
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||  ||||||||||  ||| |||||| ||||| |||| || |||| |||||| ||||||||||||||||||    
T  49219815 gaaaaccttggtagttaactatcgaggatcttctgctacaaatttgacagaagctctcccatccattattcatctca 49219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 34648228 - 34648150
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaa--tctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| | ||| || ||| || |||||| ||||| |||  ||||||||| |||||||||||||||||||||||||    
T  34648228 gaaaacctcggcagtaaattgctgaggatcttatgctacaaaattctggcagaagctctctcatccattattcatctca 34648150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 24512217 - 24512292
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  24512217 aaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 24512292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 2920537 - 2920464
Alignment:
Q  285 aacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  2920537 aacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 2920464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 41500276 - 41500184
Alignment:
Q  267 ctgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||||||| |||   ||||||| ||||||||||||||| |||||| ||||| |||||||||| | |||||||||||||||||||||||    
T  41500276 ctgcagttaactgccgagaaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 43491158 - 43491234
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||  |||||||||||||||  ||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  43491158 gaaaaccttggtagttaactgccgagaatcttctgttataaatctggcagaagctctctcatccattattcatctca 43491234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 2648166 - 2648242
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| ||| |||||||| ||||||||||||| ||||| ||||||||||||  |||||||||| |||||||||||||    
T  2648166 gaaaatctcggtagttaattgccgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctca 2648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 10365816 - 10365746
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattc 352  Q
    ||||||||  |||||||| |||||| |||||||||||| |||||||||| | |||||||||||||||||||    
T  10365816 gaaaaccttggtagttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 39393072 - 39393162
Alignment:
Q  271 agttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||||   ||||||| ||||||||||| ||| |||||| | ||| |||||||  ||| |||||||||||||||||||||||||    
T  39393072 agttaactgtcgagaaaaacctcggtagttaactgtcgaggatcttctactacaaatctgatagaagctctctcatccattattcatctca 39393162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 358
Target Start/End: Complemental strand, 40679608 - 40679545
Alignment:
Q  295 gttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||| |||||| ||||| |||||||| |||  ||||||||||||||||||||||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaacctctctcatccattattcatctca 40679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 29093840 - 29093779
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||||||   |||||||||||||    
T  29093840 agttaactgccgaggatcttctgctacaaatctggcagaagctctctca---attattcatctca 29093779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 34638189 - 34638262
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| || |||||||| || ||| |||||| ||||| ||||||   ||| |||||||||||||||||||||||||    
T  34638189 gaaaacttcggtagttaattgtcgaggatcttctgctacaaatct---agaagctctctcatccattattcatctca 34638262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 29763242 - 29763167
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  29763242 aaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 29763167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 42572776 - 42572705
Alignment:
Q  287 cctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  42572776 cctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 42572705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 14174923 - 14174859
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  14174923 agttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctca 14174859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 27487678 - 27487614
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  27487678 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 27487614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 29709334 - 29709259
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| |||| |||||||||| | | ||||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  29709334 aaaatctcaatagttaactgtcaaagatcttttgctataaatctagcagaagctctttcatccattattcatctca 29709259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 49927513 - 49927451
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    |||||||| |||| |||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 6434797 - 6434873
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| || ||||||||||||| | |||||| ||||| |||||||| ||| || ||||||||||||||||||||||    
T  6434797 gaaaacttcggtagttaactgccaaggatcttctgctacaaatctggtagaagcactctcatccattattcatctca 6434873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 13972111 - 13972187
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||| | ||| ||||| |||||| ||||| |||||||||||| ||||||||||| |||||||||||||    
T  13972111 gaaaacctcggtattaaacagccgaggatcttctgctacaaatctggcagaagctctctcatctattattcatctca 13972187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 26637259 - 26637204
Alignment:
Q  303 ccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  26637259 ccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctca 26637204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 29435025 - 29435097
Alignment:
Q  285 aacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| |||||||||||| || ||| |||||||| |||| ||||||| | |||||||||||||||||||||||    
T  29435025 aacctcggtagttaactgcagaggat-ttttgctacaaatttggcagaagttctctcatccattattcatctca 29435097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 49395657 - 49395714
Alignment:
Q  287 cctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatc 344  Q
    |||| ||||||||||||||| |||||| ||||| |||||||||||| |||||||||||    
T  49395657 cctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 13147557 - 13147621
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| |||||||||| ||||| |||||||| | |  ||||||||||||||||||||||||    
T  13147557 agttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctca 13147621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 49426750 - 49426813
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||||| |||||| ||||| ||||||||||||  || ||||||||||||||||||||||    
T  49426750 ttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 49426813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 24364737 - 24364680
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattatt 351  Q
    |||||||||||||||  || |||||| |||||||||||| |||||| |||||||||||    
T  24364737 agttaactgccgatgcgctcttgctacaaatctggcagaagctctcacatccattatt 24364680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 44596896 - 44596960
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||| ||  ||||| ||||| |||| |||||||  ||||||||||||||||||||||||    
T  44596896 agttaactgctgagtatcttctgctacaaatttggcagaaactctctcatccattattcatctca 44596960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 41779767 - 41779804
Alignment:
Q  321 aaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  41779767 aaatctagcagaagctctctcatccattattcatctca 41779804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 19159672 - 19159750
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctat---aaatctggcagatgct-ctctcatccattattcatct 356  Q
    ||||||||| ||||||||||||||| |||||| |||  |   ||||||||||||  || ||||||||||||||||||||    
T  19159672 gaaaacctcggtagttaactgccgaggatcttctgcgctacaaaatctggcagaatctcctctcatccattattcatct 19159750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 51269003 - 51269063
Alignment:
Q  298 aactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| |||| |||||| ||||| |||| | ||||| |||||||||| ||||||||||||||    
T  51269003 aactaccgaggatcttctgctacaaatttagcagaagctctctcattcattattcatctca 51269063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 12783981 - 12783905
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||||||||||||| |||||| ||||| |||||||| | | |||||||||||||||||||||||||    
T  12783981 gaaaacctcagtagttaactgccgaggatcttctgctacaaatctggaaaaagctctctcatccattattcatctca 12783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 29061331 - 29061395
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| |||| |||||| ||||| |||||||| ||| |||||||||||||||||||||||||    
T  29061331 agttaacttccgaggatcttctgctacaaatctggtagaagctctctcatccattattcatctca 29061395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Complemental strand, 32034404 - 32034340
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||||||||||| ||||| |||||||||||| | ||||| ||||||||||| |||||    
T  32034404 agttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctca 32034340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 13401545 - 13401611
Alignment:
Q  292 gtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||| |||| |||||| ||||| |||| || |||| |||||||||||||||||||||||||    
T  13401545 gtagttaactaccgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctca 13401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 29065791 - 29065853
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||| ||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||    
T  29065791 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29065853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 29074804 - 29074866
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||| ||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||    
T  29074804 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29074866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 29079568 - 29079630
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||| ||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||    
T  29079568 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29079630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 358
Target Start/End: Original strand, 29107377 - 29107439
Alignment:
Q  296 ttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||| ||| |||||| ||||| ||||||||| || |||||||||||||||||||||||||    
T  29107377 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctca 29107439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 315 - 358
Target Start/End: Complemental strand, 17596807 - 17596764
Alignment:
Q  315 tgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  17596807 tgctataaatctggcagaagctatctcatccattattcatctca 17596764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 26855956 - 26856013
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattatt 351  Q
    |||||||||||||||   |  ||||| |||||||||||| ||||||||||||||||||    
T  26855956 agttaactgccgatgcgatcctgctacaaatctggcagaagctctctcatccattatt 26856013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 30258357 - 30258263
Alignment:
Q  267 ctgcagttaactgtcga---aaacctcagtagttaactgccgatgatcttttgctat--aaatctggcagatgctctctcatccattattcatct 356  Q
    |||||||||||||||||   ||| ||| | |||||||||||||| |||||  ||||   |||||||  ||| |||||||||||||||||||||||    
T  30258357 ctgcagttaactgtcgaggaaaatctcggcagttaactgccgataatcttcagctacgaaaatctgagagaagctctctcatccattattcatct 30258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 18307303 - 18307379
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||||||| || ||||||||||||||||||||||    
T  18307303 gaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctca 18307379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 542804 - 542738
Alignment:
Q  292 gtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||||| |||||| ||||| |||||||||||| | |||||||||||||||||||||||    
T  542804 gtagttaactgccgaggatcttctgctacaaatctggcagaagttctctcatccattattcatctca 542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 25497560 - 25497636
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| ||| |||||||||||||||  ||||| ||||| ||||| |||||| |||||||||||||||||||||||||    
T  25497560 gaaaatctcggtagttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctca 25497636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 42865816 - 42865754
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    |||||| |||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  42865816 agttaattgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 11346056 - 11346133
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||| ||| |||||| ||||| ||||||||||||  || ||||||||||||||||||||||    
T  11346056 gaaaacctcggtagttaactgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctca 11346133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 35564315 - 35564386
Alignment:
Q  287 cctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| |||||||||||| || |||||| ||||| |||||||||| | |||||||||||||||||||| ||||    
T  35564315 cctcggtagttaactgctgaggatcttctgctacaaatctggcataagctctctcatccattattcacctca 35564386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 3600386 - 3600462
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||||  |||||||| ||||| |||||| ||||| ||||||| |||| | ||| |||| ||||||||||||||    
T  3600386 gaaaacctcgatagttaacagccgaggatcttctgctacaaatctgacagaagttctttcatgcattattcatctca 3600462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 8537215 - 8537291
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    |||| ||| ||||||||||||||| ||| || ||||| ||||||| ||||  || ||||||||||||||||||||||    
T  8537215 aaaatctcggtagttaactgccgaggatgttctgctacaaatctgccagaatctcctctcatccattattcatctca 8537291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 20192413 - 20192464
Alignment:
Q  293 tagttaactgccgatgatcttttgctataaatctggcagatgctctctcatc 344  Q
    ||||||| |||||| |||||| ||||| |||||||||||| |||||||||||    
T  20192413 tagttaaatgccgaggatcttctgctacaaatctggcagaagctctctcatc 20192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 358
Target Start/End: Complemental strand, 1401425 - 1401388
Alignment:
Q  321 aaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  1401425 aaatctagcagaagctctctcatccattattcatctca 1401388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 26451529 - 26451601
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcat 354  Q
    ||||||||| ||||||||||||||| |||||| ||||| |||||||||||| ||||||||||| |||||||||    
T  26451529 gaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 41274641 - 41274717
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| ||| |||||||||||||||  ||||| | |||||||||||||||| |||||||||||||||||||||||||    
T  41274641 gaaaatctcggtagttaactgccgagaatcttctactataaatctggcagaagctctctcatccattattcatctca 41274717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 18441464 - 18441389
Alignment:
Q  283 aaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| | ||||||||||||| |||||| ||||| ||||||||||||  ||||||||||||||||||||||||    
T  18441464 aaaacctcggcagttaactgccgaggatcttctgctacaaatctggcagaaactctctcatccattattcatctca 18441389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 356
Target Start/End: Complemental strand, 41858163 - 41858073
Alignment:
Q  267 ctgcagttaactgtcgaa-aacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||||||| |||  |||||| | ||||||||| ||| |||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  41858163 ctgcagttaactgccgaggaacctcgggagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 3395927 - 3395991
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| |||||| ||||| |||| |||||||  ||||||||||||||||||||||||    
T  3395927 agttaactgccgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctca 3395991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 22547504 - 22547568
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||||||| |||| |||||| | ||| |||||||||||| ||||||||||| |||||||||||||    
T  22547504 agttaactaccgaggatcttctactacaaatctggcagaagctctctcatcaattattcatctca 22547568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 42602509 - 42602583
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatct 356  Q
    ||||||||| ||||||||||||||| |||||| || || ||||||| || | | | |||||||||||||||||||    
T  42602509 gaaaacctcggtagttaactgccgaggatcttctgatacaaatctgacataagttgtctcatccattattcatct 42602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 24860448 - 24860507
Alignment:
Q  299 actgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||| || |||||| |||||||||| || |||| ||||||||||| |||||||||||||    
T  24860448 actgcggaggatcttctgctataaatttgacagaagctctctcatctattattcatctca 24860507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 12412 - 12335
Alignment:
Q  282 gaaaacctcagtagttaactgccgatgatcttttgctataaatctggcagatgct-ctctcatccattattcatctca 358  Q
    ||||||||| ||||||||||||||| |||||| ||||| ||||||||||||  || ||||||||||||||||||||||    
T  12412 gaaaacctcggtagttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctca 12335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 18918 - 18847
Alignment:
Q  287 cctcagtagttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    |||| ||||||||||| ||| |||||| ||||| |||||||||||| ||| |||||||||||||||||||||    
T  18918 cctcggtagttaactgtcgaggatcttctgctacaaatctggcagaagctttctcatccattattcatctca 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 294 - 358
Target Start/End: Original strand, 857 - 921
Alignment:
Q  294 agttaactgccgatgatcttttgctataaatctggcagatgctctctcatccattattcatctca 358  Q
    ||||||||||||| ||||||   ||| |||||||||||| ||||||| |||||||||||||||||    
T  857 agttaactgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctca 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University