View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_3 (Length: 789)
Name: NF14366_high_3
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 350 - 645
Target Start/End: Original strand, 7882981 - 7883279
Alignment:
| Q |
350 |
gcaaatcgaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaatatttttgagaagaaaattgatcaagaatctg |
449 |
Q |
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| T |
7882981 |
gcaaatcaaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaatatttttgagaagaaaattgatcaagaatctg |
7883080 |
T |
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| Q |
450 |
caaaaagggcttgggatattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgcaagctttaaggcgccaatatgaaatgttgta |
549 |
Q |
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| T |
7883081 |
caaaaaggacttgggatattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgaaagctttaaggcgccaatatgaaatgttgta |
7883180 |
T |
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| Q |
550 |
gatgtcaaatcaagattcaactgcgg---attacttcacaaaagtggtaactctcacatatcaaatgaaatctaatggtgaaacaatgcactgatgttt |
645 |
Q |
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| T |
7883181 |
gatgtcaaatcaagattcaactgctgattattacttcacaaaagtggtaactctcacatatcaaatgaaatataatggtgaaacaatgcaatgaagttt |
7883279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 7034371 - 7034670
Alignment:
| Q |
12 |
atgatgaaacagaattagaaacagcaagaataatcatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaatt |
111 |
Q |
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| T |
7034371 |
atgatgaaacagaattagaaacagcaagaataaacatcacgaagtaattccagataactaaaaactagtacaaatataacagcaaaagaatcatgtaatt |
7034470 |
T |
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| Q |
112 |
tgattgcaagaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacacccttt |
211 |
Q |
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| T |
7034471 |
tgattgcaagaaatgtc---------aatatttaggataagcttagatgtgctaaatttgatgccaagtcctagtatgttgcttattccagacacccttt |
7034561 |
T |
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| Q |
212 |
tagaaaattggagatac----gtgcaaaattaaagtcagataccaatgctaattctaacttttgcttaactatccttacatgtaaaacagaacaaagcac |
307 |
Q |
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| T |
7034562 |
tagaaaattggagatacaagagtgcaaaattatagtcaaataccaatgctaattctaacttttgcacaactatccatacatgtaaatcagaacaaagcac |
7034661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 667 - 770
Target Start/End: Original strand, 7883253 - 7883356
Alignment:
| Q |
667 |
taatggtgaaacaatgcaatgaagttttgtcacaaggcattggaaatatcttggttcaaagaaagatggacatgaatctgtcataagtgatgcgatgttt |
766 |
Q |
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| T |
7883253 |
taatggtgaaacaatgcaatgaagttttgtcacaaggcattggaaatatcttggttcaaagaaagatggacatgaatctgtcataagtgatgcgatgttt |
7883352 |
T |
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| Q |
767 |
gttc |
770 |
Q |
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|||| |
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| T |
7883353 |
gttc |
7883356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 350 - 567
Target Start/End: Original strand, 44756136 - 44756356
Alignment:
| Q |
350 |
gcaaatcgaaaattaagaaagaaagatgcaaagggcttgtttctaattcatcagtgcattgatcctaata-tttttgagaagaaaattgatcaagaatct |
448 |
Q |
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||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||| |||||| | |||||||||||| | |
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| T |
44756136 |
gcaaatcgagaattgagaaagaaagatgcaaaaggcttgttcctaattcatcagtgcattggccctaatatttttttagaagatagttgatcaagaattt |
44756235 |
T |
|
| Q |
449 |
gcaaaaagggcttggg--atattatcaagaacgcttatggtggtgatgaaaagataaagaaggtgaagctgcaagctttaaggcgccaatatgaaatgtt |
546 |
Q |
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| T |
44756236 |
gcaaagggtgcttgggatatattctcaagaacgcttatcgtggtgatgagaagatcaagaaggtgaagttgcaagctttaagacgccagcatgaactcct |
44756335 |
T |
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| Q |
547 |
gtagatgtcaaatcaagattc |
567 |
Q |
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| T |
44756336 |
tcagatgtcagatcaagattc |
44756356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 29376360 - 29376473
Alignment:
| Q |
108 |
aatttgattgcaagaaatgtctttcgaaagaatatttaggataagtttagatgtgctaaatttgatgccaagtcctagtgtgttgcttattccagacacc |
207 |
Q |
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||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||| ||||| | |||||||||||||||||||||||| |||||||| |
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| T |
29376360 |
aatttgattgcaaagaatgtcttttgaaagaatatttagaacaagttttgatgtgctgaatttaacaccaagtcctagtgtgttgcttatttcagacacc |
29376459 |
T |
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| Q |
208 |
cttttagaaaattg |
221 |
Q |
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| T |
29376460 |
cttttgaaaaattg |
29376473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 16489500 - 16489443
Alignment:
| Q |
171 |
gatgccaagtcctagtgtgttgcttattccagacacccttttagaaaattggagatac |
228 |
Q |
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| T |
16489500 |
gatgtcaagtcctagtgtgttacttattcctaacacccttttgaaaaattggagatac |
16489443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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