View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_31 (Length: 352)
Name: NF14366_high_31
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_31 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6969433 - 6969082
Alignment:
| Q |
1 |
caaacatataaaagcactcacataaaacttgcaatgcaacctaaccatatttataattcaacattgttaaccatctttttaatggtactaaatattcaac |
100 |
Q |
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| T |
6969433 |
caaacatataaaagcacacacataaaacttgcactgcaaactaaacatatttataattcaacattgttaaccatctttttaatggtactaaatattcaac |
6969334 |
T |
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| Q |
101 |
ctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataataaa |
200 |
Q |
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| T |
6969333 |
ctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatgtttcaaccttagcatattaatctaacttataataaa |
6969234 |
T |
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| Q |
201 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataactagcaatattgcctaggaatttt |
300 |
Q |
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| T |
6969233 |
gtaaattaagactcgaatgtaagcatagaaatagagattcatactaatgttttaataagactctaatataaaataactagcaatattgcctaggaatttt |
6969134 |
T |
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| Q |
301 |
cagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcc |
352 |
Q |
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| T |
6969133 |
cagccttctgcatcttctgcctccttctctgatgaaccctcttcacctgtcc |
6969082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 295
Target Start/End: Original strand, 999959 - 1000088
Alignment:
| Q |
173 |
ttagcatattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatg------ttttaataagactct-- |
264 |
Q |
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| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
1000057 |
T |
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| Q |
265 |
aatataaaataactagcaatattgcctagga |
295 |
Q |
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| T |
1000058 |
aatataaaataaccagcaatattgcctagga |
1000088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 2178513 - 2178425
Alignment:
| Q |
178 |
atattaatctaacttataataaagtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaat |
267 |
Q |
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| T |
2178513 |
atattaatctaact-ataataatctaaaataagaatgtaatgtaagcatggaaatagatattcatactaatgttttaatacgactctaat |
2178425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 51315840 - 51315915
Alignment:
| Q |
201 |
gtaaattaagactctaatgtaagcatagaaatagagattcatagtaatgttttaataagactctaatataaaataa |
276 |
Q |
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| T |
51315840 |
gtaaaataagactctattgtaaacatggaaatagatattcatattaacgttttcataagactctaatgcaaaataa |
51315915 |
T |
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