View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_35 (Length: 343)
Name: NF14366_high_35
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 37496398 - 37496073
Alignment:
| Q |
1 |
aattcagaatggaaaatgtgtgatatcttcaactatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaatggaaaacaaa |
100 |
Q |
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| T |
37496398 |
aattcagaatggaaaatgtgtgatatcttcaacaatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaatggaaaacaaa |
37496299 |
T |
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| Q |
101 |
tcagaatttggtcactcaannnnnnnagcatcacttagatattaatgtcaacaagtatagctatggtggtagtctagagaaaagtgtattcaattcaact |
200 |
Q |
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| T |
37496298 |
tcagaatttggtcactcaatttttttagcatcacttagatattaatgtcaacaagtataggtatggtggtagtctagagaaaagtgtattcaattcaact |
37496199 |
T |
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| Q |
201 |
ctttttatagnnnnnnnaaagataatctgatatatgagatggtatttatcttaccctccatattttgttctgaaatgatatcgactgttatgcaatttca |
300 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496198 |
ctttttatagtttttttaaagataatctgatatatgaaatggtatttatcttaccctccatattttgttctgaaatgatatcgactgttatgcaatttca |
37496099 |
T |
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| Q |
301 |
atgtgttcattactcgtctcacttat |
326 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37496098 |
atgtgttcattactcgtctcacttat |
37496073 |
T |
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