View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_37 (Length: 336)
Name: NF14366_high_37
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 23632129 - 23632441
Alignment:
| Q |
17 |
atttcccccataattgaacaactttgaccattgtattaatttgtatctaatttactgtcaaattagtccattaattataccagttacaagcaaattcttt |
116 |
Q |
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| T |
23632129 |
atttcccccataattgaacaactttgatcattgtattaatttgtatctaatttactgtcaaattagtccattaattataccagttacaagcaaattcttt |
23632228 |
T |
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| Q |
117 |
tagttccgtttctaaatgagatgaaaagaaacaacacaaagaaactactctttaaggaagaaagttccagctgcatccatattaagaggctcaaaaggtc |
216 |
Q |
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| T |
23632229 |
tagttccgtttctaaatgagatgaaaagaaacaacacaaagaaactactctttaaggaagaaagttccagctgcatccatattaagaggctcaaaaggtc |
23632328 |
T |
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| Q |
217 |
ttctgggggtggagcatggtaaagcagttcagtatccgaagaggctctaagtttggccataaaatctgtacattgatttccttctctaagatgttaaacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23632329 |
ttctgggggtggagcatggtaaagcagttcagtatccgaagaggctctaagtttggccataaaatctgtacattgatttccttctctaagatgttaaacg |
23632428 |
T |
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| Q |
317 |
gtgatattcttcg |
329 |
Q |
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| T |
23632429 |
gtgacattgttcg |
23632441 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 12763657 - 12763726
Alignment:
| Q |
238 |
aagcagttcagtatccgaagaggctctaagtttggccataaaatctgtacattgatttccttctctaaga |
307 |
Q |
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| T |
12763657 |
aagcaattcattatccgaagaggctccaaacttagccaaaaaatctacacattgatttccctctctaaga |
12763726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 42767741 - 42767692
Alignment:
| Q |
257 |
gaggctctaagtttggccataaaatctgtacattgatttccttctctaag |
306 |
Q |
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| T |
42767741 |
gaggctctaaatttggccataaaatccgcacattgattgccctctctaag |
42767692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 41688569 - 41688537
Alignment:
| Q |
50 |
tattaatttgtatctaatttactgtcaaattag |
82 |
Q |
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| T |
41688569 |
tattaacttgtatctaatttactgtcaaattag |
41688537 |
T |
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