View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_41 (Length: 309)
Name: NF14366_high_41
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 88 - 304
Target Start/End: Original strand, 19653993 - 19654209
Alignment:
| Q |
88 |
caaagtcgaaggattcgaggccctatggtggacgagttcctgtagccaaaggggatcgatttgatggtggaagaactcaattggatgtggggtaaggaca |
187 |
Q |
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| T |
19653993 |
caaagtcgaaggattcaaggccccatggtggacgaattcctgtagccaaaggggaacgatttgatggtggaagaactcaattggatgtggggtaacgaca |
19654092 |
T |
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| Q |
188 |
aggtggacctgcccatggttgttgtccccatggtccccattgtgggtatgatggccactgttgttgctgccatggacgtggattttattgttgtccattg |
287 |
Q |
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| T |
19654093 |
aggtggagctgcccatggtttttgtccccacggtccccattgtgggtatgatggctactgttgttgctgccatggacgtggattgtattgttgtccattg |
19654192 |
T |
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| Q |
288 |
ttttgtcctttgctact |
304 |
Q |
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|||||||| ||| |||| |
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| T |
19654193 |
ttttgtcccttgttact |
19654209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 19653649 - 19653729
Alignment:
| Q |
10 |
tcatcacttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagttttcaa |
90 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
19653649 |
tcataacttgtaagagtctcgcattcagcaaaatgtatgttgaaaaaagaaaatcagcttcagaagcttcatagttttcaa |
19653729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 17392740 - 17392666
Alignment:
| Q |
10 |
tcatcacttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagt |
84 |
Q |
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| T |
17392740 |
tcataacttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagt |
17392666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 17384016 - 17383956
Alignment:
| Q |
24 |
agtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttcatagt |
84 |
Q |
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|||||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
17384016 |
agtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagt |
17383956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 17377657 - 17377592
Alignment:
| Q |
15 |
acttgtaagagtctcgcattcagcaaaatgtatgttcaaaatcgaaaatcagcttcagaagcttca |
80 |
Q |
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| T |
17377657 |
acttgtaaaagtctcgcatttcgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttca |
17377592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 113 - 304
Target Start/End: Original strand, 7234633 - 7234824
Alignment:
| Q |
113 |
tggtggacgagttcctgtagccaaaggggatcgatttgatggtggaagaactcaattggatgtggggtaaggacaaggtggacctgcccatggttgttgt |
212 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7234633 |
tggtggacgagttcctgtagccacgggggaacgatttgatggtggacgaacccaattggatgtggggtaaggacaaggtggagctgcccatggttgttgt |
7234732 |
T |
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| Q |
213 |
ccccatggtccccattgtgggtatgatggccactgttgttgctgccatggacgtggattttattgttgtccattgttttgtcctttgctact |
304 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||| ||| |||| |
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| T |
7234733 |
ccccacggtccccattgtgggtatgatggccacagttgttgctgccatggacgtggattgtattgctgtccactgttttgtccgttgttact |
7234824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 17613586 - 17613503
Alignment:
| Q |
199 |
cccatggttgttgtccccatggtccccattgtgggtatgatggccactgttgttgctgccatggacgtggattttattgttgtc |
282 |
Q |
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|||||||||||||| |||| |||||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||| |
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| T |
17613586 |
cccatggttgttgttcccaccgtccccattggaagtatgatgaccacttttgttgctggcatggacgtggattgtattgttgtc |
17613503 |
T |
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