View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_44 (Length: 292)

Name: NF14366_high_44
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_44
NF14366_high_44
[»] scaffold1427 (1 HSPs)
scaffold1427 (235-275)||(440-480)
[»] scaffold0338 (1 HSPs)
scaffold0338 (235-275)||(4440-4480)
[»] scaffold0337 (1 HSPs)
scaffold0337 (235-275)||(10602-10642)
[»] scaffold0216 (1 HSPs)
scaffold0216 (235-275)||(20977-21017)
[»] chr7 (25 HSPs)
chr7 (235-275)||(11660578-11660618)
chr7 (235-275)||(13255226-13255266)
chr7 (235-275)||(18606599-18606639)
chr7 (235-275)||(18871558-18871598)
chr7 (235-275)||(29795424-29795464)
chr7 (235-275)||(29799243-29799283)
chr7 (235-275)||(48742935-48742975)
chr7 (236-275)||(16109750-16109789)
chr7 (236-275)||(29003585-29003624)
chr7 (236-275)||(34956899-34956938)
chr7 (235-275)||(10897674-10897714)
chr7 (235-275)||(14420998-14421038)
chr7 (235-275)||(14565349-14565389)
chr7 (239-275)||(23666319-23666355)
chr7 (235-274)||(146761-146800)
chr7 (236-275)||(833774-833813)
chr7 (236-275)||(1198954-1198993)
chr7 (236-275)||(16007681-16007720)
chr7 (236-274)||(15166418-15166456)
chr7 (235-275)||(11302474-11302514)
chr7 (235-275)||(16572865-16572905)
chr7 (235-275)||(16592757-16592797)
chr7 (236-275)||(837803-837842)
chr7 (236-275)||(1202983-1203022)
chr7 (235-275)||(13850353-13850393)
[»] chr6 (11 HSPs)
chr6 (235-275)||(221401-221441)
chr6 (235-275)||(12941482-12941522)
chr6 (235-275)||(23351767-23351807)
chr6 (235-275)||(24266454-24266494)
chr6 (239-275)||(29848930-29848966)
chr6 (240-275)||(19444559-19444594)
chr6 (236-275)||(29417327-29417366)
chr6 (235-275)||(4476057-4476097)
chr6 (235-271)||(13763626-13763662)
chr6 (235-275)||(16133883-16133923)
chr6 (235-275)||(28290722-28290762)
[»] chr5 (16 HSPs)
chr5 (235-275)||(23113180-23113220)
chr5 (235-275)||(38146196-38146236)
chr5 (235-275)||(41878429-41878469)
chr5 (236-275)||(10816067-10816106)
chr5 (235-274)||(22358478-22358517)
chr5 (236-275)||(22469518-22469557)
chr5 (236-275)||(23538066-23538105)
chr5 (239-275)||(9775116-9775152)
chr5 (235-275)||(19510673-19510713)
chr5 (235-275)||(37599786-37599826)
chr5 (235-275)||(42959726-42959766)
chr5 (236-275)||(22749373-22749412)
chr5 (235-275)||(22335801-22335841)
chr5 (235-275)||(22339339-22339379)
chr5 (235-275)||(24277923-24277963)
chr5 (235-275)||(24384250-24384290)
[»] chr4 (10 HSPs)
chr4 (235-275)||(15533480-15533520)
chr4 (235-275)||(15989493-15989533)
chr4 (235-275)||(18211886-18211926)
chr4 (235-275)||(24048127-24048167)
chr4 (236-275)||(4832015-4832054)
chr4 (236-275)||(4835310-4835349)
chr4 (235-275)||(36037213-36037253)
chr4 (235-275)||(49548860-49548900)
chr4 (236-275)||(14047481-14047520)
chr4 (236-275)||(30146045-30146084)
[»] chr3 (16 HSPs)
chr3 (235-275)||(3802231-3802271)
chr3 (235-275)||(9532519-9532559)
chr3 (235-275)||(10834718-10834758)
chr3 (235-275)||(12304435-12304475)
chr3 (235-275)||(14764573-14764613)
chr3 (235-275)||(18899728-18899768)
chr3 (236-275)||(13026908-13026947)
chr3 (235-275)||(17548789-17548829)
chr3 (235-275)||(20249677-20249717)
chr3 (235-275)||(29545695-29545735)
chr3 (235-275)||(54519858-54519898)
chr3 (236-275)||(1989812-1989851)
chr3 (236-275)||(34853116-34853155)
chr3 (235-275)||(23372321-23372361)
chr3 (235-275)||(38312664-38312704)
chr3 (235-275)||(51299794-51299834)
[»] chr2 (11 HSPs)
chr2 (235-275)||(10686067-10686107)
chr2 (235-275)||(19663269-19663309)
chr2 (235-275)||(20260518-20260558)
chr2 (235-275)||(26895977-26896017)
chr2 (236-274)||(22702745-22702783)
chr2 (235-275)||(6261991-6262031)
chr2 (235-275)||(6478617-6478657)
chr2 (235-275)||(6481995-6482035)
chr2 (235-275)||(6485462-6485502)
chr2 (235-275)||(9240928-9240968)
chr2 (235-275)||(23374675-23374715)
[»] chr1 (7 HSPs)
chr1 (235-275)||(19209262-19209302)
chr1 (235-275)||(28311859-28311899)
chr1 (235-275)||(13529125-13529165)
chr1 (235-275)||(16371136-16371176)
chr1 (236-271)||(29534186-29534221)
chr1 (235-275)||(20439024-20439064)
chr1 (236-275)||(32649536-32649575)
[»] scaffold0188 (1 HSPs)
scaffold0188 (236-275)||(896-935)
[»] scaffold0021 (1 HSPs)
scaffold0021 (236-275)||(145787-145826)
[»] scaffold0970 (1 HSPs)
scaffold0970 (235-275)||(3758-3798)
[»] scaffold0607 (1 HSPs)
scaffold0607 (235-275)||(2415-2455)
[»] scaffold0117 (1 HSPs)
scaffold0117 (235-275)||(41547-41587)
[»] scaffold0089 (1 HSPs)
scaffold0089 (235-275)||(1567-1607)
[»] scaffold0026 (1 HSPs)
scaffold0026 (235-275)||(109812-109852)
[»] scaffold0012 (1 HSPs)
scaffold0012 (235-275)||(223885-223925)
[»] chr8 (8 HSPs)
chr8 (235-275)||(20453908-20453948)
chr8 (235-275)||(44475910-44475950)
chr8 (235-275)||(44479172-44479212)
chr8 (239-274)||(20459534-20459569)
chr8 (236-274)||(8729482-8729520)
chr8 (235-275)||(21862066-21862106)
chr8 (236-275)||(38186351-38186390)
chr8 (240-275)||(44431325-44431360)
[»] scaffold0544 (1 HSPs)
scaffold0544 (235-275)||(3294-3334)
[»] scaffold0447 (1 HSPs)
scaffold0447 (235-275)||(13670-13710)
[»] scaffold0383 (1 HSPs)
scaffold0383 (235-275)||(11665-11705)
[»] scaffold0124 (1 HSPs)
scaffold0124 (235-275)||(37404-37444)
[»] scaffold0003 (1 HSPs)
scaffold0003 (240-275)||(137293-137328)
[»] scaffold0042 (1 HSPs)
scaffold0042 (241-275)||(50469-50503)


Alignment Details
Target: scaffold1427 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 440 - 480
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  440 gttcttacttctttaactttagtaacacttactaattcaac 480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 4480 - 4440
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4480 gttcttacttctttaactttagtaacacttactaattcaac 4440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 10642 - 10602
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10642 gttcttacttctttaactttagtaacacttactaattcaac 10602  T

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Target: scaffold0216 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 20977 - 21017
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20977 gttcttacttctttaactttagtaacacttactaattcaac 21017  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 11660578 - 11660618
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11660578 gttcttacttctttaactttagtaacacttactaattcaac 11660618  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 13255226 - 13255266
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13255226 gttcttacttctttaactttagtaacacttactaattcaac 13255266  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 18606599 - 18606639
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18606599 gttcttacttctttaactttagtaacacttactaattcaac 18606639  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 18871558 - 18871598
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18871558 gttcttacttctttaactttagtaacacttactaattcaac 18871598  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 29795424 - 29795464
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29795424 gttcttacttctttaactttagtaacacttactaattcaac 29795464  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 29799243 - 29799283
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29799243 gttcttacttctttaactttagtaacacttactaattcaac 29799283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 48742935 - 48742975
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48742935 gttcttacttctttaactttagtaacacttactaattcaac 48742975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 16109789 - 16109750
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16109789 ttcttacttctttaactttagtaacacttactaattcaac 16109750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 29003585 - 29003624
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29003585 ttcttacttctttaactttagtaacacttactaattcaac 29003624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 34956899 - 34956938
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34956899 ttcttacttctttaactttagtaacacttactaattcaac 34956938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 10897714 - 10897674
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  10897714 gttcttacttctttaactttagtaacacttgctaattcaac 10897674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 14420998 - 14421038
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  14420998 gttcttacttctttaactttagtaacacttgctaattcaac 14421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 14565349 - 14565389
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14565349 gttcttacttctttaactttagtaatacttactaattcaac 14565389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 23666355 - 23666319
Alignment:
Q  239 ttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||    
T  23666355 ttacttctttaactttagtaacacttactaattcaac 23666319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 146761 - 146800
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaa 274  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  146761 gttcttacttctttaactttagtaacacttgctaattcaa 146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 833813 - 833774
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  833813 ttcttacttctttaactttagtaacacttattaattcaac 833774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 1198993 - 1198954
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1198993 ttcttacttctttaactttagtaacacttattaattcaac 1198954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 16007681 - 16007720
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  16007681 ttcttacttctttaactttagtaacacttgctaattcaac 16007720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 15166418 - 15166456
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  15166418 ttcttacttctttaactttagtaacacttgctaattcaa 15166456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 11302474 - 11302514
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  11302474 gttcttacttctttaactttagtaacgcttgctaattcaac 11302514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 16572865 - 16572905
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  16572865 gttcttacttcttcaactttaataacacttactaattcaac 16572905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 16592797 - 16592757
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  16592797 gttcttacttcttcaactttaataacacttactaattcaac 16592757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 837842 - 837803
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  837842 ttcttacttctttaactttattaacacttattaattcaac 837803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 1203022 - 1202983
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  1203022 ttcttacttctttaactttattaacacttattaattcaac 1202983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 13850393 - 13850353
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| |||||||| ||||||| |||||||||||||||||||    
T  13850393 gttcatacttcttcaactttaataacacttactaattcaac 13850353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 221401 - 221441
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  221401 gttcttacttctttaactttagtaacacttactaattcaac 221441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 12941482 - 12941522
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12941482 gttcttacttctttaactttagtaacacttactaattcaac 12941522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 23351767 - 23351807
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23351767 gttcttacttctttaactttagtaacacttactaattcaac 23351807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24266454 - 24266494
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24266454 gttcttacttctttaactttagtaacacttactaattcaac 24266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 29848966 - 29848930
Alignment:
Q  239 ttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||    
T  29848966 ttacttctttaactttagtaacacttactaattcaac 29848930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 19444594 - 19444559
Alignment:
Q  240 tacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||    
T  19444594 tacttctttaactttagtaacacttactaattcaac 19444559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 29417366 - 29417327
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  29417366 ttcttacttctttaattttagtaacacttactaattcaac 29417327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 4476057 - 4476097
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  4476057 gttcttacttcttaatctttagtaacacttactaattcaac 4476097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 13763626 - 13763662
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaatt 271  Q
    |||||||||||||||||||||| ||||||||||||||    
T  13763626 gttcttacttctttaactttagcaacacttactaatt 13763662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 16133923 - 16133883
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  16133923 gttcctacttctttaactttagtaacacttattaattcaac 16133883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 28290762 - 28290722
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  28290762 gttcttacttctttaactttagtaacgcttgctaattcaac 28290722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 23113220 - 23113180
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23113220 gttcttacttctttaactttagtaacacttactaattcaac 23113180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 38146236 - 38146196
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  38146236 gttcttacttctttaactttagtaacacttactaattcaac 38146196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 41878469 - 41878429
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41878469 gttcttacttctttaactttagtaacacttactaattcaac 41878429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 10816067 - 10816106
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10816067 ttcttacttctttaactttagtaacacttactaattcaac 10816106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Complemental strand, 22358517 - 22358478
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22358517 gttcttacttctttaactttagtaacacttactaattcaa 22358478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 22469518 - 22469557
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22469518 ttcttacttctttaactttagtaacacttactaattcaac 22469557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 23538066 - 23538105
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23538066 ttcttacttctttaactttagtaacacttactaattcaac 23538105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 9775116 - 9775152
Alignment:
Q  239 ttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||    
T  9775116 ttacttctttaactttagtaacacttactaattcaac 9775152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 19510673 - 19510713
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19510673 gttcttacttctttaactttagtaacacttgctaattcaac 19510713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 37599826 - 37599786
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  37599826 gttcttacttctttaactttagtaacacttgctaattcaac 37599786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 42959726 - 42959766
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  42959726 gttcttacttctttaactttagtaacactttctaattcaac 42959766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 22749373 - 22749412
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  22749373 ttcttacttctttaactttagtaacactttctaattcaac 22749412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 22335801 - 22335841
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  22335801 gttcttactcctttaactttagtaacagttactaattcaac 22335841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 22339339 - 22339379
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  22339339 gttcttactcctttaactttagtaacagttactaattcaac 22339379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 24277963 - 24277923
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  24277963 gttcttacttcttcaactttaataacacttactaattcaac 24277923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 24384250 - 24384290
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  24384250 gttcttacttcttcaactttaataacacttactaattcaac 24384290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 15533480 - 15533520
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15533480 gttcttacttctttaactttagtaacacttactaattcaac 15533520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 15989493 - 15989533
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15989493 gttcttacttctttaactttagtaacacttactaattcaac 15989533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 18211886 - 18211926
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18211886 gttcttacttctttaactttagtaacacttactaattcaac 18211926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 24048167 - 24048127
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24048167 gttcttacttctttaactttagtaacacttactaattcaac 24048127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 4832054 - 4832015
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4832054 ttcttacttctttaactttagtaacacttactaattcaac 4832015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 4835349 - 4835310
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4835349 ttcttacttctttaactttagtaacacttactaattcaac 4835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 36037213 - 36037253
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  36037213 gttcttacctctttaactttagtaacacttactaattcaac 36037253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 49548900 - 49548860
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  49548900 gttcttacttctttacctttagtaacacttactaattcaac 49548860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 14047481 - 14047520
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  14047481 ttcttaattctttaactttagtaacacttactaattcaac 14047520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 30146045 - 30146084
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  30146045 ttcttccttctttaactttagtaacacttactaattcaac 30146084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 3802231 - 3802271
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3802231 gttcttacttctttaactttagtaacacttactaattcaac 3802271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 9532519 - 9532559
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9532519 gttcttacttctttaactttagtaacacttactaattcaac 9532559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 10834758 - 10834718
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10834758 gttcttacttctttaactttagtaacacttactaattcaac 10834718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 12304435 - 12304475
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12304435 gttcttacttctttaactttagtaacacttactaattcaac 12304475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 14764613 - 14764573
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14764613 gttcttacttctttaactttagtaacacttactaattcaac 14764573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 18899728 - 18899768
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18899728 gttcttacttctttaactttagtaacacttactaattcaac 18899768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 13026947 - 13026908
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13026947 ttcttacttctttaactttagtaacacttactaattcaac 13026908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 17548829 - 17548789
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  17548829 gttcctacttctttaactttagtaacacttactaattcaac 17548789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 20249717 - 20249677
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  20249717 gttcttacttctttaactttagtaacacttgctaattcaac 20249677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 29545735 - 29545695
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  29545735 gttcttacttctttaactttagtaacacttgctaattcaac 29545695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 54519858 - 54519898
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  54519858 gttcttacttctttacctttagtaacacttactaattcaac 54519898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 1989851 - 1989812
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1989851 ttcttacttctttaactttattaacacttactaattcaac 1989812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 34853155 - 34853116
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  34853155 ttcttacttctttaattttagtaacacttactaattcaac 34853116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 23372361 - 23372321
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  23372361 gttcttacttcttaatctttagtaacacttactaattcaac 23372321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 38312704 - 38312664
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  38312704 gttcttacttctttaactttagtaacacttgttaattcaac 38312664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 51299794 - 51299834
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  51299794 gttcttacttcttaatctttagtaacacttactaattcaac 51299834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 10686107 - 10686067
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10686107 gttcttacttctttaactttagtaacacttactaattcaac 10686067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 19663309 - 19663269
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19663309 gttcttacttctttaactttagtaacacttactaattcaac 19663269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 20260518 - 20260558
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20260518 gttcttacttctttaactttagtaacacttactaattcaac 20260558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 26895977 - 26896017
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26895977 gttcttacttctttaactttagtaacacttactaattcaac 26896017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 22702745 - 22702783
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaa 274  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22702745 ttcttacttctttaactttagtaacacttactaattcaa 22702783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 6262031 - 6261991
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  6262031 gttcttacttctttaactttagtaacagttactaattcaac 6261991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 6478657 - 6478617
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6478657 gttcctacttctttaactttagtaacacttactaattcaac 6478617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 6481995 - 6482035
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  6481995 gttcttacttctttaactttagtaacacttgctaattcaac 6482035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 6485462 - 6485502
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  6485462 gttcttacttctttaactttagtaacacttgctaattcaac 6485502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 9240928 - 9240968
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  9240928 gttcttacttctttaactttagtaacacttgctagttcaac 9240968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 23374675 - 23374715
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| |||||||| ||||||| |||||||||||||||||||    
T  23374675 gttcatacttcttcaactttaataacacttactaattcaac 23374715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 19209262 - 19209302
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19209262 gttcttacttctttaactttagtaacacttactaattcaac 19209302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 28311859 - 28311899
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28311859 gttcttacttctttaactttagtaacacttactaattcaac 28311899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 13529165 - 13529125
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  13529165 gttcctacttctttaactttagtaacacttactaattcaac 13529125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 16371136 - 16371176
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  16371136 gttcttacttctttaactttagtaacacttgctaattcaac 16371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 29534186 - 29534221
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaatt 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  29534186 ttcttacttctttaactttagtaacacttactaatt 29534221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 20439064 - 20439024
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  20439064 gttctaacttctttaactttagtaacacttgctaattcaac 20439024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 32649536 - 32649575
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  32649536 ttcttaattctttaattttagtaacacttactaattcaac 32649575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 935 - 896
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  935 ttcttacttctttaactttagtaacacttactaattcaac 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 275
Target Start/End: Original strand, 145787 - 145826
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  145787 ttcttacttctttaactttagtaacacttactaattcaac 145826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0970 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0970
Description:

Target: scaffold0970; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 3758 - 3798
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  3758 gttcctacttctttaactttagtaacacttactaattcaac 3798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 2415 - 2455
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  2415 gttcttacttctttaactttagaaacacttactaattcaac 2455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 41587 - 41547
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  41587 gttcctacttctttaactttagtaacacttactaattcaac 41547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 1567 - 1607
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  1567 gttcttacttctttaactttagtaacacttgctaattcaac 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 109812 - 109852
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  109812 gttcttacttctttaactttagtaacacttgctaattcaac 109852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 223925 - 223885
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  223925 gttcttacttctttaactttagtaactcttactaattcaac 223885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 20453908 - 20453948
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  20453908 gttcttacttctttaactttagtagcacttactaattcaac 20453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 44475910 - 44475950
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44475910 gttcttacttctttaactttagtaacacttgctaattcaac 44475950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 44479172 - 44479212
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  44479172 gttcttacttctttaactttagtaacacttgctaattcaac 44479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 20459534 - 20459569
Alignment:
Q  239 ttacttctttaactttagtaacacttactaattcaa 274  Q
    ||||||||||||||||||||||||||||||||||||    
T  20459534 ttacttctttaactttagtaacacttactaattcaa 20459569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 8729520 - 8729482
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaa 274  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  8729520 ttcttacttctttaactttagtaacacttgctaattcaa 8729482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 21862106 - 21862066
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  21862106 gttcttacttctttccctttagtaacacttactaattcaac 21862066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 275
Target Start/End: Complemental strand, 38186390 - 38186351
Alignment:
Q  236 ttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  38186390 ttcttacttcattaactttggtaacacttactaattcaac 38186351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 44431325 - 44431360
Alignment:
Q  240 tacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||| |||||||||||||||||||||||||||    
T  44431325 tacttcttcaactttagtaacacttactaattcaac 44431360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 3334 - 3294
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  3334 gttcttacttcttaatctttagtaacacttactaattcaac 3294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 13670 - 13710
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  13670 gttcatacttcttcaactttagtaacacttactaattcaac 13710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 11665 - 11705
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  11665 gttcatacttcttcaactttagtaacacttactaattcaac 11705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 275
Target Start/End: Complemental strand, 37444 - 37404
Alignment:
Q  235 gttcttacttctttaactttagtaacacttactaattcaac 275  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  37444 gttcttacttctttaactttagtaacacttgttaattcaac 37404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 137293 - 137328
Alignment:
Q  240 tacttctttaactttagtaacacttactaattcaac 275  Q
    |||||||| |||||||||||||||||||||||||||    
T  137293 tacttcttcaactttagtaacacttactaattcaac 137328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 50469 - 50503
Alignment:
Q  241 acttctttaactttagtaacacttactaattcaac 275  Q
    ||||||| |||||||||||||||||||||||||||    
T  50469 acttcttcaactttagtaacacttactaattcaac 50503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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