View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_5 (Length: 701)

Name: NF14366_high_5
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_5
NF14366_high_5
[»] chr6 (1 HSPs)
chr6 (19-695)||(19353990-19354666)


Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 695
Target Start/End: Complemental strand, 19354666 - 19353990
Alignment:
Q  19 ttttttccgttcaaattacactatttctttttcttctagtaacaattagttgtgaggtagatgtttttatatatctgacataattttggtattgtgaaca 118  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19354666 ttttttccgttcaagttacactattt-tttttcttctagtaataattaattgtgaggtagatgtatttatatatctgacataattttggtattgtgaaca 19354568  T
Q  119 aatttttaatcaacagcttgatgatttgaaggacattggactttctgaaaaacaggtatcattgttcttctcatagtattatcatattctttttgagttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  19354567 aatttttaatcaacagcttgatgatttgaaggacattggactttctgaaaaacaggtatcattgttcttctcatagtattatcatattc--tttgagttt 19354470  T
Q  219 gcatgtttgattgtccatgagtaaatccaataataaacgatgtgtaacnnnnnnnnnnnattcttatgcagattaagggaatgatgaagaaggaagttgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  19354469 gcatgtttgattgtccatgagtaaatccaataataaacgatgtgtaactttttttttttattcttatgcagattaagggaatgatgaagaaggaagttgg 19354370  T
Q  319 agagcttttcaattagttttaatggcattatcaagtgcttgtatgtataattgatatttatgctggcaacctacagttgcctctgcgttgtatgtcattt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19354369 agagcttttcaattagttttaatggcattatcaagtgcttgtatgtataattgatatttatgctggcaacctacagttgcctctgcgttgtatgtcattt 19354270  T
Q  419 ccatatgtatctgtaattcattaagt--nnnnnnnnnnngatgtattaggaattcttttatctagattcgttatatgtatgatgaaattcatatattgga 516  Q
    ||||||||||||||||||||||| ||             |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19354269 ccatatgtatctgtaattcattacgtaaaaaaaaaaaacgatgtattaggaattcttttatctagattcattatatgtatgatgaaattcatatattgga 19354170  T
Q  517 cacatgacaaagaaaacaaaatgtgagac--gagataaacaaataaggttctagtatttataaagcaattggaaatttgtattgtaaggtactagattca 614  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19354169 cacatgacaaagaaaacaaaatgtgggacaagagataaacaaataaggttctagtatttat-aagcaattggaaatttgtattgtaaggtactagattca 19354071  T
Q  615 ttactagtatttataaagtacttatttttcccttgccgcaattttgtcttctattaaagaaagagtttgcaatatattctt 695  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||    
T  19354070 ttactagtatttataaggtacttatttttcccttgcctcaaatttgtcttctattgaagaaagagtttgcaatattttctt 19353990  T

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