View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_54 (Length: 249)

Name: NF14366_high_54
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_54
NF14366_high_54
[»] chr6 (23 HSPs)
chr6 (1-208)||(236967-237174)
chr6 (144-207)||(21514815-21514878)
chr6 (144-207)||(2813006-2813069)
chr6 (158-208)||(5699924-5699974)
chr6 (158-208)||(9905389-9905439)
chr6 (144-205)||(17264721-17264782)
chr6 (149-206)||(29630749-29630806)
chr6 (148-203)||(5639177-5639232)
chr6 (1-52)||(6704061-6704112)
chr6 (158-207)||(1945366-1945415)
chr6 (149-206)||(2539768-2539825)
chr6 (158-207)||(4508086-4508135)
chr6 (138-203)||(14587349-14587414)
chr6 (130-207)||(24604145-24604222)
chr6 (1-52)||(3365838-3365889)
chr6 (144-207)||(3717066-3717129)
chr6 (1-52)||(13800962-13801013)
chr6 (136-203)||(17501292-17501358)
chr6 (1-46)||(2539624-2539669)
chr6 (174-207)||(7413109-7413142)
chr6 (158-203)||(14037753-14037798)
chr6 (1-46)||(21514972-21515017)
chr6 (1-46)||(29519452-29519497)
[»] chr3 (33 HSPs)
chr3 (130-207)||(51258702-51258779)
chr3 (130-207)||(47302317-47302394)
chr3 (1-207)||(29035972-29036179)
chr3 (1-122)||(47769435-47769558)
chr3 (130-207)||(29048628-29048705)
chr3 (144-207)||(500970-501033)
chr3 (149-207)||(34821127-34821185)
chr3 (144-205)||(28873318-28873379)
chr3 (149-205)||(51816531-51816587)
chr3 (144-207)||(35142385-35142448)
chr3 (144-207)||(51540411-51540474)
chr3 (149-203)||(34009882-34009936)
chr3 (144-202)||(38977537-38977595)
chr3 (144-205)||(3351852-3351913)
chr3 (130-203)||(35345697-35345770)
chr3 (145-205)||(3902592-3902652)
chr3 (149-193)||(43472766-43472810)
chr3 (159-207)||(46622579-46622627)
chr3 (144-207)||(2358406-2358469)
chr3 (144-207)||(4394291-4394354)
chr3 (152-207)||(33439507-33439562)
chr3 (136-207)||(45244601-45244671)
chr3 (1-52)||(46624893-46624944)
chr3 (149-208)||(50716570-50716629)
chr3 (149-208)||(50796218-50796277)
chr3 (130-208)||(14828699-14828777)
chr3 (158-208)||(41300936-41300986)
chr3 (149-207)||(43471466-43471524)
chr3 (136-190)||(45711886-45711940)
chr3 (174-207)||(30721618-30721651)
chr3 (1-46)||(35142247-35142292)
chr3 (1-46)||(38977689-38977734)
chr3 (1-46)||(51540555-51540600)
[»] chr7 (34 HSPs)
chr7 (136-207)||(16278317-16278388)
chr7 (130-204)||(43186083-43186157)
chr7 (149-208)||(3304534-3304593)
chr7 (1-207)||(7115053-7115256)
chr7 (144-207)||(9152103-9152166)
chr7 (144-207)||(42925424-42925487)
chr7 (150-207)||(33573832-33573889)
chr7 (130-207)||(48705783-48705860)
chr7 (1-52)||(37398826-37398877)
chr7 (159-207)||(26554947-26554995)
chr7 (148-204)||(47239505-47239561)
chr7 (136-207)||(30861387-30861458)
chr7 (152-207)||(36468323-36468378)
chr7 (144-207)||(37518047-37518110)
chr7 (144-207)||(47202799-47202862)
chr7 (1-46)||(3936281-3936326)
chr7 (158-207)||(6466921-6466970)
chr7 (158-207)||(8155225-8155274)
chr7 (144-205)||(19225384-19225445)
chr7 (158-207)||(24041981-24042030)
chr7 (1-46)||(33151376-33151421)
chr7 (135-207)||(5731063-5731134)
chr7 (144-208)||(19818692-19818755)
chr7 (2-46)||(37518236-37518280)
chr7 (1-52)||(6467075-6467126)
chr7 (144-207)||(8214378-8214441)
chr7 (1-52)||(16983677-16983728)
chr7 (144-207)||(43737394-43737457)
chr7 (149-207)||(31985301-31985359)
chr7 (144-206)||(36629515-36629577)
chr7 (1-46)||(9151969-9152014)
chr7 (1-46)||(19818553-19818598)
chr7 (158-207)||(42864885-42864934)
chr7 (1-45)||(28230410-28230454)
[»] chr1 (30 HSPs)
chr1 (136-207)||(800677-800747)
chr1 (130-207)||(24472612-24472689)
chr1 (136-207)||(9445973-9446043)
chr1 (144-207)||(28866414-28866477)
chr1 (136-206)||(43318859-43318928)
chr1 (130-201)||(34006559-34006630)
chr1 (158-208)||(6099724-6099774)
chr1 (158-208)||(6099904-6099954)
chr1 (130-204)||(26230338-26230412)
chr1 (149-207)||(27795147-27795205)
chr1 (144-205)||(45046636-45046697)
chr1 (2-208)||(3561118-3561320)
chr1 (144-207)||(18583328-18583391)
chr1 (4-51)||(38158996-38159043)
chr1 (152-207)||(40907718-40907773)
chr1 (144-207)||(42546280-42546342)
chr1 (149-207)||(41584365-41584423)
chr1 (152-206)||(49677783-49677837)
chr1 (149-202)||(8704307-8704360)
chr1 (1-46)||(40650616-40650661)
chr1 (158-206)||(38131211-38131259)
chr1 (151-207)||(38885532-38885588)
chr1 (1-49)||(45880047-45880095)
chr1 (1-52)||(5284255-5284306)
chr1 (130-205)||(6223539-6223613)
chr1 (144-207)||(41584449-41584512)
chr1 (166-207)||(40650488-40650529)
chr1 (1-46)||(41584606-41584651)
chr1 (1-46)||(45046791-45046836)
chr1 (3-52)||(52744778-52744827)
[»] chr5 (40 HSPs)
chr5 (141-207)||(14112136-14112202)
chr5 (130-203)||(5456316-5456389)
chr5 (136-207)||(16429245-16429316)
chr5 (144-207)||(31928909-31928972)
chr5 (149-207)||(31221123-31221181)
chr5 (149-206)||(26898588-26898645)
chr5 (130-207)||(32841755-32841832)
chr5 (144-207)||(6157005-6157068)
chr5 (144-207)||(39525050-39525113)
chr5 (130-207)||(21070625-21070702)
chr5 (149-208)||(12464901-12464960)
chr5 (144-207)||(15958023-15958086)
chr5 (144-207)||(27212977-27213040)
chr5 (144-207)||(37183565-37183628)
chr5 (151-206)||(38692567-38692622)
chr5 (136-193)||(8739080-8739137)
chr5 (130-207)||(26093719-26093796)
chr5 (130-207)||(33487871-33487948)
chr5 (158-207)||(40619769-40619818)
chr5 (166-206)||(6800725-6800765)
chr5 (1-53)||(26622247-26622299)
chr5 (1-53)||(33901094-33901146)
chr5 (136-208)||(38641107-38641178)
chr5 (144-207)||(26190106-26190169)
chr5 (149-208)||(33331420-33331479)
chr5 (1-52)||(39524911-39524962)
chr5 (1-52)||(41253435-41253486)
chr5 (136-206)||(28445284-28445353)
chr5 (1-46)||(6156866-6156911)
chr5 (1-46)||(7884328-7884373)
chr5 (1-46)||(27212839-27212884)
chr5 (1-46)||(31221280-31221325)
chr5 (1-46)||(32841911-32841956)
chr5 (146-199)||(38372577-38372630)
chr5 (130-207)||(41253566-41253643)
chr5 (139-208)||(43387943-43388011)
chr5 (174-206)||(5247283-5247315)
chr5 (130-206)||(20891872-20891948)
chr5 (159-207)||(28083160-28083208)
chr5 (166-206)||(42289752-42289792)
[»] chr4 (38 HSPs)
chr4 (150-206)||(46440057-46440113)
chr4 (144-207)||(25752227-25752290)
chr4 (144-206)||(7931976-7932038)
chr4 (131-205)||(49001341-49001415)
chr4 (151-207)||(14473999-14474055)
chr4 (144-207)||(53893810-53893873)
chr4 (144-206)||(25538763-25538825)
chr4 (144-206)||(29822900-29822962)
chr4 (149-207)||(38417116-38417174)
chr4 (151-207)||(48318848-48318904)
chr4 (136-207)||(4936506-4936577)
chr4 (152-207)||(19835848-19835903)
chr4 (148-207)||(38536495-38536554)
chr4 (144-198)||(52089574-52089628)
chr4 (150-203)||(2505819-2505872)
chr4 (1-46)||(14474153-14474198)
chr4 (130-207)||(37222271-37222347)
chr4 (136-203)||(372233-372300)
chr4 (152-207)||(6003457-6003512)
chr4 (144-207)||(18050973-18051036)
chr4 (144-207)||(25491179-25491242)
chr4 (152-207)||(34973192-34973247)
chr4 (148-203)||(40703988-40704043)
chr4 (1-52)||(42497811-42497862)
chr4 (144-207)||(54631276-54631339)
chr4 (1-47)||(39118326-39118372)
chr4 (130-207)||(6228597-6228674)
chr4 (130-207)||(20083276-20083353)
chr4 (1-46)||(25491336-25491381)
chr4 (144-205)||(27741899-27741960)
chr4 (1-46)||(40703845-40703890)
chr4 (1-46)||(48319005-48319050)
chr4 (5-50)||(48629497-48629542)
chr4 (158-207)||(49397345-49397394)
chr4 (1-46)||(54631433-54631478)
chr4 (2-46)||(17933078-17933122)
chr4 (136-203)||(25140805-25140870)
chr4 (175-207)||(47784344-47784376)
[»] chr2 (36 HSPs)
chr2 (70-207)||(38065356-38065487)
chr2 (136-207)||(17133029-17133100)
chr2 (136-207)||(30763954-30764025)
chr2 (144-207)||(42894689-42894752)
chr2 (149-207)||(15994898-15994956)
chr2 (149-207)||(39447474-39447532)
chr2 (144-207)||(17474577-17474640)
chr2 (144-207)||(25217553-25217616)
chr2 (144-207)||(44465519-44465582)
chr2 (158-207)||(33452221-33452270)
chr2 (130-207)||(34517401-34517478)
chr2 (147-207)||(41510208-41510268)
chr2 (148-207)||(41854682-41854741)
chr2 (1-52)||(45293813-45293864)
chr2 (158-207)||(32187663-32187712)
chr2 (1-46)||(39447335-39447380)
chr2 (136-203)||(9847297-9847363)
chr2 (1-52)||(19109945-19109996)
chr2 (144-207)||(27670808-27670871)
chr2 (1-52)||(30763822-30763873)
chr2 (1-52)||(35251103-35251154)
chr2 (1-52)||(41510359-41510410)
chr2 (161-207)||(41202968-41203014)
chr2 (1-47)||(42478916-42478962)
chr2 (130-207)||(11457250-11457327)
chr2 (158-207)||(16750223-16750272)
chr2 (1-46)||(32187805-32187850)
chr2 (152-205)||(33440291-33440344)
chr2 (1-46)||(36875158-36875203)
chr2 (130-207)||(38308611-38308688)
chr2 (162-207)||(42604805-42604850)
chr2 (1-46)||(44465663-44465708)
chr2 (158-206)||(5507746-5507794)
chr2 (136-208)||(25715765-25715836)
chr2 (131-207)||(35251231-35251307)
chr2 (4-52)||(37773746-37773794)
[»] chr8 (24 HSPs)
chr8 (136-207)||(33472281-33472352)
chr8 (156-208)||(28219013-28219065)
chr8 (144-207)||(11698100-11698163)
chr8 (144-207)||(42280675-42280738)
chr8 (144-207)||(8885236-8885299)
chr8 (1-51)||(10840693-10840743)
chr8 (144-206)||(28917087-28917149)
chr8 (136-207)||(31234605-31234677)
chr8 (158-207)||(27927734-27927783)
chr8 (130-207)||(36980867-36980944)
chr8 (130-206)||(7981814-7981890)
chr8 (135-203)||(10833397-10833464)
chr8 (144-207)||(3094997-3095060)
chr8 (145-207)||(31519678-31519738)
chr8 (144-206)||(40994982-40995044)
chr8 (1-46)||(3094858-3094903)
chr8 (160-205)||(9073847-9073892)
chr8 (1-46)||(27927882-27927927)
chr8 (1-46)||(34853501-34853546)
chr8 (136-193)||(41530886-41530942)
chr8 (1-46)||(42280832-42280877)
chr8 (1-53)||(1374113-1374165)
chr8 (159-207)||(4259466-4259514)
chr8 (175-207)||(17119664-17119696)
[»] scaffold0182 (1 HSPs)
scaffold0182 (158-207)||(23299-23348)
[»] scaffold0027 (1 HSPs)
scaffold0027 (159-207)||(141778-141826)
[»] scaffold0564 (1 HSPs)
scaffold0564 (152-206)||(4691-4745)
[»] scaffold0508 (1 HSPs)
scaffold0508 (145-207)||(3177-3239)
[»] scaffold0016 (1 HSPs)
scaffold0016 (136-206)||(205684-205753)
[»] scaffold0010 (2 HSPs)
scaffold0010 (152-206)||(140806-140860)
scaffold0010 (1-52)||(140658-140709)
[»] scaffold0018 (1 HSPs)
scaffold0018 (149-206)||(174146-174203)
[»] scaffold0137 (1 HSPs)
scaffold0137 (144-207)||(9282-9344)
[»] scaffold0091 (1 HSPs)
scaffold0091 (1-50)||(2000-2049)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 236967 - 237174
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgttt-caatcgaaaaccaatattcaggttatttgatcggattgctctgaaa 99  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  236967 atattaatcttcctaactctcatcgttctattttaggtcattgttagttgttttcagtcgaaaaccaatattcaggttatttgatcggattgctctgaaa 237066  T
Q  100 cttagtcataaaatctgaagaagnnnnnnntcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcg 199  Q
    ||| | ||||||||| |||||||       ||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  237067 cttggccataaaatcagaagaag-aaaaaatcaaggaccaagaatcccttagaagggtcttcttacgggactccgcccctcaaaatccaaaattccatcg 237165  T
Q  200 tttagacct 208  Q
    |||||||||    
T  237166 tttagacct 237174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 21514878 - 21514815
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  21514878 tcccttagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 21514815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 2813069 - 2813006
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||| || ||||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  2813069 tcccttagaatggacttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacc 2813006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 5699924 - 5699974
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  5699924 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacct 5699974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 9905389 - 9905439
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  9905389 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacct 9905439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 17264721 - 17264782
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||||||| ||||||||||||||  | ||| ||||||||||||||||||||||||||    
T  17264721 tcccctagaagggacttcttacgggacttcgtccctcaaaatccaaaatttcatcgtttaga 17264782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 29630806 - 29630749
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||| | ||||||| ||||| ||||||| |||||||||||||||||||||||||||    
T  29630806 tagaagagacttcttatgggaccctgcccctcaaaatccaaaatttcatcgtttagac 29630749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 5639177 - 5639232
Alignment:
Q  148 ttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||| |||||||||    
T  5639177 ttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgttta 5639232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6704112 - 6704061
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||| ||||    
T  6704112 atattaatcttcctaactctcatcattcgattttaggtcattgttagctgtt 6704061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 1945415 - 1945366
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||||| || ||||||||||    
T  1945415 cttcttacgggactccgcccctcaaaatccaaaattccaacgtttagacc 1945366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 2539768 - 2539825
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||| | ||||||||||||||| ||||| ||||||||||||||  |||||||||||    
T  2539768 tagaagtgacttcttacgggactccgcccctcaaaatccaaaattcaatcgtttagac 2539825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 4508135 - 4508086
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  4508135 cttcttaagggactccgcccctcaaaatccaaaattccatcgtttagacc 4508086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 14587414 - 14587349
Alignment:
Q  138 caagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||| ||||||||||||  ||||||||||||||| ||| | |||||||||||||| ||| |||||    
T  14587414 caagactcccttagaaggaacttcttacgggactccgccactcaaaatccaaaattccattgttta 14587349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 24604222 - 24604145
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || ||||||||||||| |||||| ||| |||| ||| | |||||||||||||| || ||||||||||    
T  24604222 tcaaggatcatgactcccttagaagggacttcttgcggaactccgcctctcaaaatccaaaattccaccgtttagacc 24604145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3365838 - 3365889
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||| |||||    
T  3365838 atattaatcttcctaactttcatccttctgttttaggtcattgttaattgtt 3365889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 3717129 - 3717066
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||| | ||||||||||||||| ||||| |||||||||||||| ||  |||||||||    
T  3717129 tcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccactgtttagacc 3717066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13801013 - 13800962
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| || |  ||| |||||||||||||||||    
T  13801013 atattaatcttcctaactctcatcattatgttttgggtcattgttagttgtt 13800962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 17501292 - 17501358
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| ||| ||||||||| ||| ||||||||||| |||  | |||||||||||||||||||||||    
T  17501292 atcaagactcctttagaagggactttttacgggactccgccatc-aaaatccaaaatttcatcgttta 17501358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2539624 - 2539669
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  2539624 atattaatcttcctaactctcatccttctgttttgggtcattgtta 2539669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 7413109 - 7413142
Alignment:
Q  174 gccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  7413109 gcccctcaaaatccaaaatttcatcgtttagacc 7413142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 14037798 - 14037753
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    |||||||||||||||||| || |||||||||| ||| |||||||||    
T  14037798 cttcttacgggactctgctcctcaaaatccaacattccatcgttta 14037753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 21515017 - 21514972
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  21515017 atattaatcttcctaactctcatccttctcctttgggtcattgtta 21514972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29519452 - 29519497
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||| ||||| ||||| ||| |||||||||||    
T  29519452 atattaatcttcctaactatcatccttctattttgggtcattgtta 29519497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 51258702 - 51258779
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || |||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  51258702 tcaaggatcatgactcccgtagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 51258779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 47302317 - 47302394
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || |||| |||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||    
T  47302317 tcaaggatcatgactcccatagaagggacttcttacgggactctgcccctcaaaatccaaaattccattgtttagacc 47302394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 29035972 - 29036179
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtttc-aatcgaaaac-caatattcaggttatttgatcggattgctctgaa 98  Q
    |||||| ||||||||||||||||| || |  |||||||||||||||  |||| | |||||||||  |||||||| || ||||||||| ||||||||  ||    
T  29035972 atattactcttcctaactctcatcattatgttttaggtcattgttaactgttcccaatcgaaaaaacaatattctggctatttgatcagattgctcataa 29036071  T
Q  99 acttagtcataaaatctgaagaagnnnnnnntcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatc 198  Q
    |||| | || |||||| ||||||        ||||| ||||| | | ||  | ||| | |||| |||||||||||||||| ||||||| |||||||||||    
T  29036072 actttgccacaaaatcagaagaa-aaaaaaatcaaggatcaaaacttccacataagagacttcctacgggactctgcccctcaaaatctaaaatttcatc 29036170  T
Q  199 gtttagacc 207  Q
    |||||||||    
T  29036171 gtttagacc 29036179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 47769435 - 47769558
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt-tcaatcg-aaaaccaatattcaggttatttgatcggattgctctgaa 98  Q
    |||||||||||  ||||| ||||| ||||| |||||||||||||||||||||  || ||| ||||   |||||| ||||||||||||||||||||| |||    
T  47769435 atattaatctttttaactatcatcattctattttaggtcattgttagttgttcccagtcgaaaaaatgatattcgggttatttgatcggattgctcagaa 47769534  T
Q  99 acttagtcataaaatctgaagaag 122  Q
    |||| |  |||||||| |||||||    
T  47769535 actttgcaataaaatcagaagaag 47769558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 29048628 - 29048705
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||| |||| ||||| || ||| ||||||||||| ||||| |||||||||||||| |||||||||||||    
T  29048628 tcaaggatcaagactcccgtagaaaggacttattacgggactccgcccctcaaaatccaaaattccatcgtttagacc 29048705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 501033 - 500970
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| |||||||||| |||| ||||| |||||||||||||| |||||||||||||    
T  501033 tcccatagaagggacttcttacggcactccgcccctcaaaatccaaaattccatcgtttagacc 500970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 34821185 - 34821127
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| |||||||||||| || ||||| |||||||||||||| |||||||||||||    
T  34821185 tagaagggacttcttacgggagtccgcccctcaaaatccaaaattccatcgtttagacc 34821127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 28873318 - 28873379
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||||| | ||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  28873318 tcccctagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttaga 28873379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 51816531 - 51816587
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    ||||| || ||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  51816531 tagaatggacttcttacgggactctgcccctcaaaattcaaattttcatcgtttaga 51816587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 35142385 - 35142448
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||| ||| |||||  ||||||||||||| |||||||||||||    
T  35142385 tcccgtagaagggacttcttacggggctccgcccctaaaaatccaaaattccatcgtttagacc 35142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 51540474 - 51540411
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||||| | |||| |||||||| |||||||||||| | |||||||||||||    
T  51540474 tcccttagaagggacttctcatgggattctgcccctcaaaatccaaaactccatcgtttagacc 51540411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 34009936 - 34009882
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  34009936 tagaagggacttcttacgtgactccgccccccaaaatccaaaattccatcattta 34009882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 38977595 - 38977537
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttt 202  Q
    |||| |||||||| ||||||  ||||||| ||||| |||||||||||||||||||||||    
T  38977595 tcccgtagaagggacttcttgtgggactccgcccctcaaaatccaaaatttcatcgttt 38977537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 3351913 - 3351852
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||||||| ||||||| ||||||| ||||| ||||||| |||||| |||||||||||    
T  3351913 tcccgtagaagggacttcttatgggactccgcccctcaaaatctaaaattccatcgtttaga 3351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 35345770 - 35345697
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||| ||||||| || | |||||||| ||||| ||||||||| ||||| |||||||||||||| || ||||||    
T  35345770 tcaagtatcaagactctcgtagaagggacttctaacgggactccgcccctcaaaatccaaaattccaccgttta 35345697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 3902652 - 3902592
Alignment:
Q  145 cccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||||||||||   |||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  3902652 cccttagaaggaatttcttacgggactccgcccctcaaaatccaaaattcaatcgtttaga 3902592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 43472810 - 43472766
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatt 193  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||    
T  43472810 tagaagggacttcttacgggactccgcccctcaaaatccaaaatt 43472766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 46622627 - 46622579
Alignment:
Q  159 ttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||||| ||||| || ||||||||||| |||||||||||||    
T  46622627 ttcttacgggactccgcccctcagaatccaaaattccatcgtttagacc 46622579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 2358469 - 2358406
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||  ||||| ||||||| |||||| ||| |||||||||    
T  2358469 tcccctagaagggacttcttacgggactacgcccctcaaaatctaaaattccattgtttagacc 2358406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 4394291 - 4394354
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||  ||| |||||||| || ||||| |||||||||||||| |||||||||||||    
T  4394291 tcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacc 4394354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 33439507 - 33439562
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||| |||||| |||| ||||| |||||||||||||| |||||||||||||    
T  33439507 aagggacttgttacggaactccgccccacaaaatccaaaattccatcgtttagacc 33439562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 45244601 - 45244671
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| |||||||||| || ||||||||| ||||| |||| | ||||||||||||| |||| ||||||||    
T  45244601 atcaagactcccttagaaaggacttcttacgagactccgccctc-aaaatccaaaattccatcatttagacc 45244671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 46624893 - 46624944
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  ||| ||||||| |||||||||    
T  46624893 atattaatcttcctaactctcatccttctgttttgggtcattattagttgtt 46624944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 50716570 - 50716629
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||| | |||||||||||| || ||||| |||||||||||||| |||| |||||||||    
T  50716570 tagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacct 50716629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 50796277 - 50796218
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||| | |||||||||||| || ||||| |||||||||||||| |||| |||||||||    
T  50796277 tagaagagacttcttacgggattccgcccctcaaaatccaaaattccatcctttagacct 50796218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 208
Target Start/End: Complemental strand, 14828777 - 14828699
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||| ||||||| |||  |||||| | |||||||| |||||| |||   |||||||||||||| ||||||||||||||    
T  14828777 tcaaggatcaagattcctctagaagagacttcttacaggactccgcctttcaaaatccaaaattccatcgtttagacct 14828699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 41300936 - 41300986
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||||||||||| ||||  ||||||| |||||| ||||||||||||||    
T  41300936 cttcttacgggactccgcccatcaaaatcaaaaattccatcgtttagacct 41300986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 43471524 - 43471466
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||  ||||||||  |||||  |||| ||||||||||||||||||||||||||||    
T  43471524 tagaaggaacttcttacaagactccacccctcaaaatccaaaatttcatcgtttagacc 43471466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 45711940 - 45711886
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaa 190  Q
    ||||||| || |||||||||| |||||||||||||||  |||| |||||||||||    
T  45711940 atcaagactctcttagaagggacttcttacgggactccacccctcaaaatccaaa 45711886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 30721651 - 30721618
Alignment:
Q  174 gccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||||||||||||||||||||||||    
T  30721651 gcccctcaaaatccaaaatttcatcgtttagacc 30721618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 35142247 - 35142292
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  35142247 atattaatcttcctaactctcatccttctgctttgggtcattgtta 35142292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38977734 - 38977689
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  38977734 atattaatcttcctaactctcatccttctgttttgggtcattgtta 38977689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51540600 - 51540555
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  51540600 atattaatcttcctaactctcatccttctcctttgggtcattgtta 51540555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 16278317 - 16278388
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||||| ||||||||||||||| || |  ||||||||||||||||||||||||||||    
T  16278317 atcaagactcccttagaagggacttcttacgggactccgcacatcaaaatccaaaatttcatcgtttagacc 16278388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 43186083 - 43186157
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttag 204  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||| |||||  ||||||||||||| ||||||||||    
T  43186083 tcaaggatcaagactcccttagaagggacttcttacgggactccgcccctaaaaatccaaaattccatcgtttag 43186157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 3304593 - 3304534
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||||||    
T  3304593 tagaagggacttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacct 3304534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 7115256 - 7115053
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt-tcaatcgaaaaccaa-tattcaggttatttgatcggattgctctgaa 98  Q
    |||||||||||  ||||||||||| ||||| ||| ||||||||||||||||| | | || |||| |   | ||| || || ||||||| |||||||||||    
T  7115256 atattaatcttgataactctcatccttctatttttggtcattgttagttgttcttagtcaaaaatcgtgttttcgggctacttgatcgtattgctctgaa 7115157  T
Q  99 acttagtcataaaatctgaagaagnnnnnnntcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatc 198  Q
    ||||  ||| |||||| ||| ||        ||||| ||||||| ||||||||||||| |||||||||||||||   ||| |||||||||||||| |||     
T  7115156 acttcctcagaaaatcagaaaaa-----aaatcaaggatcaagactcccttagaagggacttcttacgggactccttccctcaaaatccaaaattccatt 7115062  T
Q  199 gtttagacc 207  Q
    |||||||||    
T  7115061 gtttagacc 7115053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 9152103 - 9152166
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  9152103 tcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 9152166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 42925487 - 42925424
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  42925487 tcccttagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 42925424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 33573889 - 33573832
Alignment:
Q  150 agaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  33573889 agaagggacttcttacgggactccgcccctcaaaatccaaaatttcattgtttagacc 33573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 48705860 - 48705783
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||| || ||||| |||||||| |||||||  |||||| ||||| |||| |||||||||||||||||||||||    
T  48705860 tcaagaatccaggatcccgtagaagggacttcttataggactccgcccctcaaattccaaaatttcatcgtttagacc 48705783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37398877 - 37398826
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  37398877 atattaatcttcctaactctcatcattctgttttaggtcattgttagttgtt 37398826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 26554995 - 26554947
Alignment:
Q  159 ttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  26554995 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacc 26554947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 47239561 - 47239505
Alignment:
Q  148 ttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttag 204  Q
    ||||||||| ||||||||||||||  ||| | |||||||||||||||||||||||||    
T  47239561 ttagaagggacttcttacgggacttcgcctctcaaaatccaaaatttcatcgtttag 47239505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 30861387 - 30861458
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||| ||||||||| |||||||| ||| ||  |||| | |||| |||||||||||||||||||||    
T  30861387 atcaagaatcctttagaagggacttcttacaggattcctcccctcgaaattcaaaatttcatcgtttagacc 30861458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 36468378 - 36468323
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||||||||||| ||||| ||| || |||||||||||||||||||||    
T  36468378 aagggacttcttacgggactccgcccctcaagattcaaaatttcatcgtttagacc 36468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 37518110 - 37518047
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||| | |||||||| |||||| ||||| |||||||||||||| |||||||||||||    
T  37518110 tcccatagaagagacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 37518047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 47202799 - 47202862
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||| ||||||| ||||| |||||||||||||| ||| |||||||||    
T  47202799 tcccatagaagggacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacc 47202862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3936281 - 3936326
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  3936281 atattaatcttcctaactctcatccttctattttgggtcattgtta 3936326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 6466970 - 6466921
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||| ||||| ||||||| ||||||||||||||||||||    
T  6466970 cttcttatgggactccgcccctcaaaatctaaaatttcatcgtttagacc 6466921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 8155225 - 8155274
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||||| ||| |||||||||    
T  8155225 cttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 8155274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 19225445 - 19225384
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||||||  |||||||| |||||| ||||| |||||||||||||| |||||||||||    
T  19225445 tcccatagaaggaacttcttacaggactccgcccctcaaaatccaaaattccatcgtttaga 19225384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 24042030 - 24041981
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||| | |||||||||||||    
T  24042030 cttcttacgggactccgcccctcaaaatccaaaactccatcgtttagacc 24041981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 33151376 - 33151421
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  33151376 atattaatcttcctaactctcatccttctattttgggtcattgtta 33151421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 5731134 - 5731063
Alignment:
Q  135 aatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| ||||||||||||| ||||||||| |||||   ||| |||||||||||||| |||| ||||||||    
T  5731134 aatcaagactcccttagaagggacttcttacgagactc-caccctcaaaatccaaaattccatcatttagacc 5731063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 19818692 - 19818755
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||| |||||||| |||||||||||||||  |||| |||| ||||||||| ||||||||||||||    
T  19818692 tcccgtagaagggacttcttacgggactccacccctcaaa-tccaaaattccatcgtttagacct 19818755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 37518280 - 37518236
Alignment:
Q  2 tattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||    
T  37518280 tattaatcttcctaactctcatccttctgttttaggtcattgtta 37518236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6467126 - 6467075
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||| |||||||||||| || ||||| |||||||||||||||| ||||    
T  6467126 atattaattttcctaactctcttccttctattttaggtcattgttagctgtt 6467075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 8214441 - 8214378
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||||||||| ||||  ||||| || ||||||||||| |||| ||||||||    
T  8214441 tcccttagaagggacttcttacgagacttcgcccctcacaatccaaaattccatcttttagacc 8214378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16983728 - 16983677
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||| ||| ||||||| |||| ||||    
T  16983728 atattaatcttcctaactctcatccttctatttttggtcattattagctgtt 16983677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 43737394 - 43737457
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  ||||||  ||||||| ||||| ||||||| |||||| |||||||||||||    
T  43737394 tcccttagaaggaacttcttgtgggactccgcccctcaaaatctaaaattccatcgtttagacc 43737457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 31985359 - 31985301
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||  ||||||| |||||||||||| |||| |||||||||  ||||||||||||    
T  31985359 tagaagggatttcttacaggactctgcccctcaaactccaaaattcaatcgtttagacc 31985301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 36629515 - 36629577
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||| |||||||| |||||||||||||||   ||  |||||||||||||| ||||||||||||    
T  36629515 tcccgtagaagggacttcttacgggactccatccttcaaaatccaaaattccatcgtttagac 36629577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9151969 - 9152014
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  9151969 atattaatcttcctaactctcatccttctgttttgggtcattgtta 9152014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19818553 - 19818598
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  19818553 atattaatcttcctaactctcatccttctgttttgggtcattgtta 19818598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 42864934 - 42864885
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||| ||||| ||||||||||||||  ||||||||||||    
T  42864934 cttcttatgggactccgcccctcaaaatccaaaattcaatcgtttagacc 42864885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28230454 - 28230410
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtt 45  Q
    |||||||||||||||||||||||| ||||  ||| ||||||||||    
T  28230454 atattaatcttcctaactctcatccttctgttttgggtcattgtt 28230410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 800747 - 800677
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  800747 atcaagactcccttagaagggacttcttacgggactctg-ccctcaaaatccaaaattccatcgtttagacc 800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 24472689 - 24472612
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||| |||| |||||||| |||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  24472689 tcaaggatcaagactcccatagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacc 24472612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 9446043 - 9445973
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| |||||||||||||  |||||||||||||| |||| | |||||||||||||||||||||||||||    
T  9446043 atcaagactcccttagaagggatttcttacgggactccgccctc-aaaatccaaaatttcatcgtttagacc 9445973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 28866477 - 28866414
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  |||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  28866477 tcccttagaaggcacttcctacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 28866414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 43318928 - 43318859
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| ||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  43318928 atcaagattcccttagaagagacttcttacgggactctg-ccctcaaaatccaaaatttcatcatttagac 43318859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Original strand, 34006559 - 34006630
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtt 201  Q
    ||||| |||| || |||| |||||||| ||||||||||||||| | ||| ||||||||||||||||||||||    
T  34006559 tcaaggatcatgactcccgtagaagggacttcttacgggactccgtccctcaaaatccaaaatttcatcgtt 34006630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 6099774 - 6099724
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  6099774 cttcttatgggactctgcccctcaaaatccaaaatttaatcgtttagacct 6099724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 6099954 - 6099904
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  6099954 cttcttatgggactctgcccctcaaaatccaaaatttaatcgtttagacct 6099904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 26230338 - 26230412
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttag 204  Q
    ||||| || ||| ||||| |||||||| ||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  26230338 tcaaggatgaagtatcccatagaagggacttcttatgggactctgtccctcaaaatctaaaatttcatcgtttag 26230412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 27795147 - 27795205
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| | |||||||| |||||| ||||| ||||||||||||||||||||||||||||    
T  27795147 tagaagagacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagacc 27795205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 45046697 - 45046636
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    ||||||||||||| ||||||| | ||||| ||||| |||||||||||||| |||||||||||    
T  45046697 tcccttagaagggacttcttatgagactccgcccctcaaaatccaaaattccatcgtttaga 45046636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 3561320 - 3561118
Alignment:
Q  2 tattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt-tcaatcgaaaa-ccaatattcaggttatttgatcggattgctctgaaa 99  Q
    |||||||||| |||||||||||| ||||  ||||||||||||||||||||| | | || |||| || || ||  ||||| |||||| |||||||| ||||    
T  3561320 tattaatctttctaactctcatcattctgttttaggtcattgttagttgttcttagtcaaaaatccgatctttgggttacttgatcagattgctccgaaa 3561221  T
Q  100 cttagtcataaaatctgaagaagnnnnnnntcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcg 199  Q
    |||   ||||||||| ||| |         ||||||||||||| |||| |||||| | ||||||  ||  ||| ||||| |||||| ||||||||||||     
T  3561220 ctttcccataaaatcagaaaa------caatcaagaatcaagactcccatagaagtgacttcttgtggagctccgcccctcaaaattcaaaatttcatct 3561127  T
Q  200 tttagacct 208  Q
    |||||||||    
T  3561126 tttagacct 3561118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 18583391 - 18583328
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||| | ||||||||||||||| ||||| |||||||||||||| ||| |||||||||    
T  18583391 tcccatagaagagacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 18583328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 38159043 - 38158996
Alignment:
Q  4 ttaatcttcctaactctcatcgttctagtttaggtcattgttagttgt 51  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  38159043 ttaatcttcctaactctcatccttctgttttaggtcattgttagttgt 38158996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 40907773 - 40907718
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  40907773 aagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 40907718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 42546280 - 42546342
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  ||||||||||||||| |||| | ||||||||||||| |||||||||||||    
T  42546280 tcccttagaaggaacttcttacgggactccgccctc-aaaatccaaaattccatcgtttagacc 42546342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 41584423 - 41584365
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| ||||||||||||||| ||||| ||||||| |||||| ||| |||||||||    
T  41584423 tagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacc 41584365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 49677783 - 49677837
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| ||||||||||||||| ||||| |||||| ||||||| ||||||||||||    
T  49677783 aagggacttcttacgggactccgcccctcaaaattcaaaattccatcgtttagac 49677837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 8704360 - 8704307
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttt 202  Q
    |||||||| ||||||||||||||   |||| |||||||||||||||||||||||    
T  8704360 tagaagggacttcttacgggactacacccctcaaaatccaaaatttcatcgttt 8704307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40650661 - 40650616
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| |||| |||| |||||||||||    
T  40650661 atattaatcttcctaactctcatccttctcgtttgggtcattgtta 40650616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 38131211 - 38131259
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||| |||||||||||||| |||||||||||| | ||||||||||||    
T  38131211 cttctttcgggactctgcccctcaaaatccaaaactccatcgtttagac 38131259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 38885532 - 38885588
Alignment:
Q  151 gaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| ||||||| ||||||| ||||| |||||| ||||||| |||||||||||||    
T  38885532 gaagggacttcttatgggactccgcccctcaaaattcaaaattccatcgtttagacc 38885588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45880095 - 45880047
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagtt 49  Q
    |||||||||||||||||| ||||| ||||  ||||||||||||||||||    
T  45880095 atattaatcttcctaactttcatccttctgttttaggtcattgttagtt 45880047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5284306 - 5284255
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||  ||||| ||||  |||||||||||||||||||||    
T  5284306 atattaatcttcctaaccttcatcattctgttttaggtcattgttagttgtt 5284255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 6223613 - 6223539
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    ||||| |||| || ||||||||||| | |||||||||| || | ||||| |||||||||||||| |||||||||||    
T  6223613 tcaaggatcatgactcccttagaagagacttcttacgg-acaccgcccctcaaaatccaaaattccatcgtttaga 6223539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 41584512 - 41584449
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||| ||||| || |||| |||||| ||| |||||||||    
T  41584512 tcccatagaagggacttcttacgggactccgcccctcacaatctaaaattccattgtttagacc 41584449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 40650529 - 40650488
Alignment:
Q  166 gggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  40650529 gggactccgcccctcaaaatccaaaattccatcgtttagacc 40650488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41584651 - 41584606
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  41584651 atattaatcttcctaactctcatccttctgttttgggtcattgtta 41584606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45046836 - 45046791
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  45046836 atattaatcttcctaactctcatccttctgttttgggtcattgtta 45046791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 52744827 - 52744778
Alignment:
Q  3 attaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||| ||||  ||| ||||||||||| |||||    
T  52744827 attaatcttcctaactctcatccttctgttttgggtcattgttacttgtt 52744778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 14112136 - 14112202
Alignment:
Q  141 gaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| |||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  14112136 gaatcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 14112202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 5456316 - 5456389
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||||||||| || ||||||||||  |||||||||||||| ||| | ||||||||||||||||||||||||    
T  5456316 tcaagaatcaagactcacttagaagggatttcttacgggactccgcctctcaaaatccaaaatttcatcgttta 5456389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 16429245 - 16429316
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| | ||||||||||| ||||||||||||||| ||||| |||||| |||||||| ||||||||||||    
T  16429245 atcaagactaccttagaagggacttcttacgggactccgcccctcaaaattcaaaattttatcgtttagacc 16429316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 31928972 - 31928909
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| |||||| |||||||| ||||  ||||||||||||||||||||||||||||    
T  31928972 tcccttagaagggacttcttgcgggactccgcccttcaaaatccaaaatttcatcgtttagacc 31928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 31221181 - 31221123
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  31221181 tagaagggacttcttacgagactccgcccctcaaaatccaaaatttcatcgtttagacc 31221123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 26898645 - 26898588
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  26898645 tagaagggacttcttacaggactccgcccctcaaaatccaaaatttcatcgtttagac 26898588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 32841832 - 32841755
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || |||| |||||||| ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  32841832 tcaaggatcatgactcccctagaagggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 32841755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 6157005 - 6157068
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||| |||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  6157005 tcccgtagtagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 6157068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 39525050 - 39525113
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  ||||||  ||||||||||||| |||||||||||||| |||||||||||||    
T  39525050 tcccttagaaggaacttcttgtgggactctgcccctcaaaatccaaaattccatcgtttagacc 39525113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 21070625 - 21070702
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| |||||| |||| |||||||| |||||||  |||| ||||||| |||||||||||||| ||| |||||||||    
T  21070625 tcaagagtcaagactcccctagaagggacttcttattggacactgcccctcaaaatccaaaattccattgtttagacc 21070702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 12464960 - 12464901
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||||  ||||||||||||||||||||| |||||||||||||| |||  |||||||||    
T  12464960 tagaaggaacttcttacgggactctgcccctcaaaatccaaaattccattatttagacct 12464901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 15958023 - 15958086
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||| | ||||||| ||||||  ||| | ||||||||||||||||||||||||||||    
T  15958023 tcccttagaagcgacttcttatgggacttcgcctctcaaaatccaaaatttcatcgtttagacc 15958086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 27212977 - 27213040
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||| ||||| ||||||| |||||| ||| |||||||||    
T  27212977 tcccctagaagggacttcttacgggactccgcccctcaaaatctaaaattccattgtttagacc 27213040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 37183628 - 37183565
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| | ||||||||||||| ||||| |||||||||||||| |||| ||||||||    
T  37183628 tcccgtagaagggacatcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 37183565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 38692622 - 38692567
Alignment:
Q  151 gaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||  |||||||||||    
T  38692622 gaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagac 38692567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 8739137 - 8739080
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatt 193  Q
    ||||||| ||||||||||||  ||| ||||||||||| ||||| ||||||||||||||    
T  8739137 atcaagactcccttagaaggaacttattacgggactccgcccctcaaaatccaaaatt 8739080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 26093719 - 26093796
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||| | |||| |||| ||| |||||||||||||||  |||| |||||||||||||| |||| ||||||||    
T  26093719 tcaaggatcaaaactcccgtagaggggacttcttacgggactcctcccctcaaaatccaaaattccatcatttagacc 26093796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 33487871 - 33487948
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || ||||||||||||| ||||||  ||||| | |||||  ||||||||||||| |||||||||||||    
T  33487871 tcaaggatcatgactcccttagaagggacttcttttgggaccccgcccctaaaaatccaaaattccatcgtttagacc 33487948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 40619818 - 40619769
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||||| |||| ||||||||    
T  40619818 cttcttacgggactccgcccctcaaaatccaaaattccatcatttagacc 40619769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 6800765 - 6800725
Alignment:
Q  166 gggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  6800765 gggactccgcccctcaaaatccaaaatttcatcgtttagac 6800725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26622247 - 26622299
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgttt 53  Q
    ||||||| |||||||||| ||||| ||||| ||||||| ||||||||||||||    
T  26622247 atattaaacttcctaactttcatccttctattttaggttattgttagttgttt 26622299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33901094 - 33901146
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgttt 53  Q
    |||||||||||||||||||  ||| ||||  ||||||||||||||||||||||    
T  33901094 atattaatcttcctaactcatatccttctcttttaggtcattgttagttgttt 33901146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 38641107 - 38641178
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||| | ||||||||| | ||||||||||||| ||| ||| ||||||||||||||| ||| |||||||||    
T  38641107 atcaagacttccttagaagagacttcttacgggaccctg-ccctcaaaatccaaaattttatcatttagacct 38641178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 26190169 - 26190106
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||  ||||||| ||||||| ||||| |||||||||||||| ||| |||||||||    
T  26190169 tcccctagaaggaacttcttaagggactccgcccctcaaaatccaaaattccattgtttagacc 26190106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 33331420 - 33331479
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||||| ||||||||  ||||  | ||| |||||||||||||||||||||||||||||    
T  33331420 tagaagggacttcttaccagacttcgtccctcaaaatccaaaatttcatcgtttagacct 33331479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39524911 - 39524962
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  ||| ||||||||||| |||||    
T  39524911 atattaatcttcctaactctcatccttctgttttgggtcattgttacttgtt 39524962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 41253435 - 41253486
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  41253435 atattaatcttcctaactatcatcctcctgttttaggtcattgttagttgtt 41253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 28445353 - 28445284
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| ||||||||||||| ||||||| |  |||| |||| | ||||||||||||| ||||||||||||    
T  28445353 atcaagactcccttagaagggacttcttatgatactccgccctc-aaaatccaaaattccatcgtttagac 28445284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6156866 - 6156911
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  6156866 atattaatcttcctaactctcatccttctgtttttggtcattgtta 6156911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7884328 - 7884373
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  7884328 atattaatcttcctaactctcatccttctgttttgggtcattgtta 7884373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27212839 - 27212884
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| |||| ||||  ||||||||||    
T  27212839 atattaatcttcctaactctcatccttctggtttgagtcattgtta 27212884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31221325 - 31221280
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  31221325 atattaatcttcctaactctcatctttctgttttgggtcattgtta 31221280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32841956 - 32841911
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||| |||  ||||||||||    
T  32841956 atattaatcttcctaactctcatccttctattttgagtcattgtta 32841911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 38372577 - 38372630
Alignment:
Q  146 ccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcg 199  Q
    ||||||||| | |||||||||||||||  |||| |||||||||||||| |||||    
T  38372577 ccttagaagagacttcttacgggactccacccctcaaaatccaaaattccatcg 38372630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 41253566 - 41253643
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||| ||||||||||| | ||||||  | ||||| | ||  ||||||| ||||||||||||||||||||    
T  41253566 tcaaggatcaagactcccttagaagagacttctttagagactccgaccttcaaaatctaaaatttcatcgtttagacc 41253643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 43388011 - 43387943
Alignment:
Q  139 aagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||| |||||||||| || ||||||||||||||| |  || |||||||||||||| |||| |||||||||    
T  43388011 aagactcccttagaaaggacttcttacgggactccg-tcctcaaaatccaaaattccatcatttagacct 43387943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 5247315 - 5247283
Alignment:
Q  174 gccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| |||||||||||||||||||||||||||    
T  5247315 gcccctcaaaatccaaaatttcatcgtttagac 5247283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 20891872 - 20891948
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| |||| || |||| || ||||| |||||||||||| || | ||  |||||||||||||| ||||||||||||    
T  20891872 tcaaggatcatgactcccctacaagggacttcttacgggattccgtccttcaaaatccaaaattccatcgtttagac 20891948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 28083208 - 28083160
Alignment:
Q  159 ttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| |||||| |||||| |||||||||||||| ||||||| |||||    
T  28083208 ttcttatgggactatgcccctcaaaatccaaaattccatcgttcagacc 28083160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 42289752 - 42289792
Alignment:
Q  166 gggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||||||||| ||||||||||||||  |||||||||||    
T  42289752 gggactctgcccctcaaaatccaaaattctatcgtttagac 42289792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 46440113 - 46440057
Alignment:
Q  150 agaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  46440113 agaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagac 46440057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25752290 - 25752227
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||| | ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  25752290 tcccttagaagagacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 25752227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 7931976 - 7932038
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||| |||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||    
T  7931976 tcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagac 7932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 49001415 - 49001341
Alignment:
Q  131 caagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||| || ||||||||||||| ||||||||||||||| || || |||||||||||||| |||||||||||    
T  49001415 caaggatcatgactcccttagaagggacttcttacgggactccgctcctcaaaatccaaaattacatcgtttaga 49001341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 14474055 - 14473999
Alignment:
Q  151 gaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  14474055 gaagggacttcttacgggactccgcccctcaagatccaaaatttcatcgtttagacc 14473999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 53893873 - 53893810
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||| ||| ||| ||||| ||||||||||||||||||||||||||||    
T  53893873 tcccgtagaagggacttcttatgggtctccgcccctcaaaatccaaaatttcatcgtttagacc 53893810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 25538825 - 25538763
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||||||| | ||||||||||||||| ||||| |||||||||||||  ||||||||||||    
T  25538825 tcccttagaagagacttcttacgggactccgcccctcaaaatccaaaataccatcgtttagac 25538763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 29822900 - 29822962
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||| |||||||| |||| |||||||||||||||| |||||| ||||||| ||||||||||||    
T  29822900 tcccgtagaagggacttcctacgggactctgcccctcaaaattcaaaattccatcgtttagac 29822962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 38417116 - 38417174
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| |||||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  38417116 tagaagggacttcttacaggactccgcccttcaaaatccaaaatttcatcgtttagacc 38417174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 48318904 - 48318848
Alignment:
Q  151 gaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||    
T  48318904 gaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 48318848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 4936577 - 4936506
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| |||||||||||   ||||||| ||||||| | ||| ||||||||||||||||||| ||||||||    
T  4936577 atcaagactcccttagaagatacttcttatgggactccgtccctcaaaatccaaaatttcatcttttagacc 4936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 19835848 - 19835903
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||||||||||| ||||| |||||||||||||| ||| |||||||||    
T  19835848 aagggacttcttacgggactccgcccctcaaaatccaaaattccattgtttagacc 19835903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 38536495 - 38536554
Alignment:
Q  148 ttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| || ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  38536495 ttagaaaggacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 38536554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 52089574 - 52089628
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatc 198  Q
    |||| |||||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  52089574 tcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattccatc 52089628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 2505872 - 2505819
Alignment:
Q  150 agaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||  ||||||||    
T  2505872 agaagggacttcttacgggattctgcccctcaaaatccaaaattctatcgttta 2505819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14474198 - 14474153
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  14474198 atattaatcttcctaaccctcatccttctattttaggtcattgtta 14474153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 37222271 - 37222347
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||| ||||||||  ||||||||| |||||  |||| |||||||||||||| || ||||||||||    
T  37222271 tcaagaatcaagactcc-ttagaaggaacttcttacgagactcctcccctcaaaatccaaaattccaacgtttagacc 37222347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 372233 - 372300
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| | ||||| ||||| |||||||||||||||  |||| |||||| |||||| ||||||||||    
T  372233 atcaagacttccttataagggacttcttacgggactcctcccctcaaaattcaaaatatcatcgttta 372300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 6003512 - 6003457
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||  || |||||||||    
T  6003512 aaggggcttcttacgggactccgcccctcaaaatccaaaattctattgtttagacc 6003457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 18051036 - 18050973
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||  ||| |||||||| || ||||| |||||||||||||| |||||||||||||    
T  18051036 tcccgtagaaggaactttttacgggattccgcccctcaaaatccaaaattccatcgtttagacc 18050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25491242 - 25491179
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||||||||||    
T  25491242 tcccttagaagggacttctcaagggattccgtccctcaaaatccaaaattccatcgtttagacc 25491179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 34973192 - 34973247
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||||| |||||||| ||||| |||||||||||||| ||| |||||||||    
T  34973192 aagggacttctttcgggactccgcccctcaaaatccaaaattccattgtttagacc 34973247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Original strand, 40703988 - 40704043
Alignment:
Q  148 ttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||||  ||||||||||||||| ||||| ||||||| |||||| |||||||||    
T  40703988 ttagaaggaacttcttacgggactccgcccctcaaaatctaaaattccatcgttta 40704043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42497862 - 42497811
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    ||||||||||| |||||||||||| || |  |||||||||||||||||||||    
T  42497862 atattaatctttctaactctcatcattttgttttaggtcattgttagttgtt 42497811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 54631339 - 54631276
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||||| || ||||||||||||||| || || |||||| ||||||| |||||||||||||    
T  54631339 tcccatagaaaggacttcttacgggactccgcacctcaaaatacaaaattccatcgtttagacc 54631276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39118326 - 39118372
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttag 47  Q
    ||||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  39118326 atattaatcttactaactcttatccttctaatttaggtcattgttag 39118372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 6228674 - 6228597
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| || || |||| |||||||  |||||||| ||||||  |||| |||||||||||||| ||| |||||||||    
T  6228674 tcaagaaccatgactcccgtagaaggaacttcttacaggactcctcccctcaaaatccaaaattccattgtttagacc 6228597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 20083276 - 20083353
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||| || || ||||||  ||||||  |||| || || || |||||||||||||| |||||||||||||    
T  20083276 tcaagaatcaagactcactgagaaggaacttcttgtgggattccgctcctcaaaatccaaaattccatcgtttagacc 20083353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25491381 - 25491336
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  25491381 atattaatcttcctaactctcatccttctgttttgggtcattgtta 25491336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 27741960 - 27741899
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    |||| |||||||  ||||||| ||||||| ||||| |||||||||||||| ||| |||||||    
T  27741960 tcccgtagaaggaacttcttatgggactccgcccctcaaaatccaaaattccattgtttaga 27741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40703845 - 40703890
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  40703845 atattaatcttcctaactctcatccttctgttttgggtcattgtta 40703890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 48319050 - 48319005
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  48319050 atattaatcttcctaactctcatccttctgttttgggtcattgtta 48319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 48629542 - 48629497
Alignment:
Q  5 taatcttcctaactctcatcgttctagtttaggtcattgttagttg 50  Q
    ||||||||||||||| |||| ||||  |||||||||||||||||||    
T  48629542 taatcttcctaactcacatccttctgttttaggtcattgttagttg 48629497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 49397345 - 49397394
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| |||| || ||||| |||||||||||||||||| |||||||||    
T  49397345 cttcttatgggattcggcccctcaaaatccaaaatttcattgtttagacc 49397394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54631478 - 54631433
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  54631478 atattaatcttcctaactctcatccttctgttttgggtcattgtta 54631433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 17933122 - 17933078
Alignment:
Q  2 tattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    ||||||||||||||||||||||| ||||  ||| |||||||||||    
T  17933122 tattaatcttcctaactctcatccttctgttttgggtcattgtta 17933078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 25140870 - 25140805
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| ||||||||||||| ||||||||| |||||  | ||  |||||||||||||| ||||||||    
T  25140870 atcaagactcccttagaagggacttcttacgagactc--cgccataaaatccaaaatttaatcgttta 25140805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 47784344 - 47784376
Alignment:
Q  175 ccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||||||||||||||||||||||||||||    
T  47784344 cccctcaaaatccaaaatttcatcgtttagacc 47784376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 207
Target Start/End: Complemental strand, 38065487 - 38065356
Alignment:
Q  70 ttcaggttatttgatcggattgctctgaaacttagtcataaaatctgaagaagnnnnnnntcaagaatcaagaatcccttagaagggtcttcttacggga 169  Q
    |||||| |||||||||||||||||| |||||||   ||||||||| ||| ||        ||||| |||| || |||  |||||| | ||||||||||||    
T  38065487 ttcaggctatttgatcggattgctccgaaactttcccataaaatcagaaaaa------attcaaggatcatgactcctgtagaagagacttcttacggga 38065394  T
Q  170 ctctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||| ||||| ||||||||||||||||||||||||||||    
T  38065393 ctccgcccctcaaaatccaaaatttcatcgtttagacc 38065356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 17133029 - 17133100
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||| | ||| ||||||||||| | ||| ||||||||||||||||||||||||||||    
T  17133029 atcaagactcccttagaagagactttttacgggactccgaccctcaaaatccaaaatttcatcgtttagacc 17133100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 30763954 - 30764025
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| || | |||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  30763954 atcaagactctcatagaagggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtctagacc 30764025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 42894689 - 42894752
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  42894689 tcccttagaaggaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 42894752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 15994956 - 15994898
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  15994956 tagaatggacttcttacgggactccgcccctcaaaatccaaaatttcatcgtttagacc 15994898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 39447474 - 39447532
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  39447474 tagaagggacttcttacgggactccgcccctcaaaatccaaaattacatcgtttagacc 39447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 17474640 - 17474577
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||   ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  17474640 tcccttagaagaaacttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 17474577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 25217616 - 25217553
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||| ||||| ||||||||||||||  ||||||||||||    
T  25217616 tcccatagaagggacttcttacgggactccgcccctcaaaatccaaaattctatcgtttagacc 25217553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 44465582 - 44465519
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| ||||||||||||||| ||||| |||||||||||||| |||| ||||||||    
T  44465582 tcccctagaagggacttcttacgggactccgcccctcaaaatccaaaattccatcttttagacc 44465519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 33452270 - 33452221
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  33452270 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 33452221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 34517401 - 34517478
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || |||| |||||||| |||||||||||| || || || |||||||||||||| |||||||||||||    
T  34517401 tcaaggatcatgactcccatagaagggacttcttacgggattccgcacctcaaaatccaaaattccatcgtttagacc 34517478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 41510268 - 41510208
Alignment:
Q  147 cttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||  ||||||| |||||||  |||| ||||||||||||||||||||||||||||    
T  41510268 cttagaaggaacttcttatgggactccacccctcaaaatccaaaatttcatcgtttagacc 41510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 41854741 - 41854682
Alignment:
Q  148 ttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||  ||||||| ||||||| ||||| |||||||||||||| |||||||||||||    
T  41854741 ttagaaggaacttcttatgggactccgcccctcaaaatccaaaattccatcgtttagacc 41854682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 45293813 - 45293864
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  |||||||||||| ||||||||    
T  45293813 atattaatcttcctaactctcatctttctgttttaggtcattgctagttgtt 45293864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 32187712 - 32187663
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||||||  |||| |||||||||||||| |||||||||||||    
T  32187712 cttcttacgggactccacccctcaaaatccaaaattccatcgtttagacc 32187663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 39447335 - 39447380
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  39447335 atattaatcttcctaactctcatccttctattttgggtcattgtta 39447380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 9847363 - 9847297
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    ||||||| | ||||||||| | ||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  9847363 atcaagacttccttagaagagacttcttacgggactctg-ccctcaaaatccaaaattccatcattta 9847297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19109996 - 19109945
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| || || ||| |||||||||||| ||||    
T  19109996 atattaatcttcctaactctcatccttttattttgggtcattgttagctgtt 19109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 27670808 - 27670871
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||| | | ||||| ||||||| ||||| |||||| ||||||| |||||||||||||    
T  27670808 tcccttagaagagacctcttatgggactccgcccctcaaaattcaaaattccatcgtttagacc 27670871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30763822 - 30763873
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||| ||||    
T  30763822 atattaatcttcctaactctcatctttctgtttttggtcattgttagctgtt 30763873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35251103 - 35251154
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||| ||||||  ||| ||||| |||||||||||||||||||||    
T  35251103 atattaatcttcttaactcctatccttctattttaggtcattgttagttgtt 35251154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41510410 - 41510359
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| ||||  ||| ||||||||||| |||||    
T  41510410 atattaatcttcctaactctcatccttctgttttgggtcattgttacttgtt 41510359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 41203014 - 41202968
Alignment:
Q  161 cttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||||| ||||  ||||||||||||||||||||||||||||    
T  41203014 cttacaggactccgcccatcaaaatccaaaatttcatcgtttagacc 41202968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 42478916 - 42478962
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttag 47  Q
    |||||||||||||||||||||||| || |  ||||||||||||||||    
T  42478916 atattaatcttcctaactctcatccttatgttttaggtcattgttag 42478962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 11457250 - 11457327
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||| | |||| |||||||| ||||||||| ||||| | ||| ||||||  |||||| |||||||||||||    
T  11457250 tcaaggatcaaaattcccatagaagggacttcttacgagactccgtccctcaaaatttaaaattccatcgtttagacc 11457327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 16750272 - 16750223
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||| |||||| ||||| |||||||||||||| |||||||||||||    
T  16750272 cttcctacaggactccgcccctcaaaatccaaaattccatcgtttagacc 16750223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32187850 - 32187805
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  32187850 atattaatcttcctaactctcatccttctgttttgggtcattgtta 32187805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 33440344 - 33440291
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    ||||| ||||||||||||||| ||| | |||||| ||||||| |||||||||||    
T  33440344 aagggacttcttacgggactccgcctctcaaaattcaaaattccatcgtttaga 33440291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36875158 - 36875203
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  36875158 atattaatcttcctaactctcatccttctgttttgggtcattgtta 36875203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 38308688 - 38308611
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| |||| || |||||||||||||  || |||  |||||| ||||| |||||||||||||| ||| |||||||||    
T  38308688 tcaaggatcatgactcccttagaagggaatttttattggactccgcccctcaaaatccaaaattccattgtttagacc 38308611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 42604850 - 42604805
Alignment:
Q  162 ttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||  |||||  |||||||||||||||||||||||||||    
T  42604850 ttacgggacttcgccccttaaaatccaaaatttcatcgtttagacc 42604805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44465708 - 44465663
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  44465708 atattaatcttcctaactctcatccttctgttttgggtcattgtta 44465663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 5507746 - 5507794
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| || |||| ||||| |||||||||||||| ||||||||||||    
T  5507746 cttcttatggaactccgcccctcaaaatccaaaattccatcgtttagac 5507794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 208
Target Start/End: Original strand, 25715765 - 25715836
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    ||||||| ||||||||||| |  |||||| ||||||| |||| | ||||||||||||| |||| |||||||||    
T  25715765 atcaagactcccttagaagagatttcttatgggactccgccctc-aaaatccaaaattccatcatttagacct 25715836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 35251231 - 35251307
Alignment:
Q  131 caagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||||||| |||| ||||| |  ||||||| |  |||| |||||  |||||||||||||||||||||||||||    
T  35251231 caaggatcaagactcccatagaaagtacttcttatgaaactccgccccttaaaatccaaaatttcatcgtttagacc 35251307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 37773794 - 37773746
Alignment:
Q  4 ttaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||| |||||||||||| ||||  ||||| |||||||||||||||    
T  37773794 ttaatctttctaactctcatccttctgttttagttcattgttagttgtt 37773746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 33472281 - 33472352
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||| | ||||||||||||||  ||||| |||||| |||||||||||||||||||||    
T  33472281 atcaagactcccttagaagagacttcttacgggactacgcccctcaaaattcaaaatttcatcgtttagacc 33472352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 28219065 - 28219013
Alignment:
Q  156 gtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacct 208  Q
    |||||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  28219065 gtcttcttacgggactatgcccctcaaaatccaaaattttatcgtttagacct 28219013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 11698163 - 11698100
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| | ||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  11698163 tcccatagaagggacgtcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 11698100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 42280738 - 42280675
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||||    
T  42280738 tcccctagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcgtttagacc 42280675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 8885299 - 8885236
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| |||||||| |||||||| |||||| ||||| |||||||||||||| |||| ||||||||    
T  8885299 tcccgtagaagggacttcttacaggactccgcccctcaaaatccaaaattccatcatttagacc 8885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10840743 - 10840693
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgt 51  Q
    |||||||||||||||||||||||| |||| | ||||||| |||||||||||    
T  10840743 atattaatcttcctaactctcatccttctggattaggtccttgttagttgt 10840693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 28917087 - 28917149
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||||||||  ||||||| ||||||| ||||| |||||||||||||| ||| ||||||||    
T  28917087 tcccttagaaggaacttcttatgggactccgcccctcaaaatccaaaattccattgtttagac 28917149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 31234677 - 31234605
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacg--ggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||| ||||||||||||| |||||||||  |||||| |||| | ||||||||||||| |||||||||||||    
T  31234677 atcaagactcccttagaagggacttcttacgcgggactccgccctc-aaaatccaaaattccatcgtttagacc 31234605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 27927783 - 27927734
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||||||    
T  27927783 cttcttacgggactccacccctccaaatccaaaatttcatcgtttagacc 27927734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 36980867 - 36980944
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||| ||||||| |||| |||||||| |||||||| |||||| || || |||||| ||||||  |||||||||||||    
T  36980867 tcaaggatcaagactcccctagaagggacttcttacaggactccgctcctcaaaattcaaaatcccatcgtttagacc 36980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 7981814 - 7981890
Alignment:
Q  130 tcaagaatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| ||||||| |||||||||||||  || |||  |||||  ||||| |||||||||||||| ||||||||||||    
T  7981814 tcaagcatcaagactcccttagaagggatttgttataggacttcgcccctcaaaatccaaaattccatcgtttagac 7981890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 10833464 - 10833397
Alignment:
Q  135 aatcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgttta 203  Q
    |||||||| ||||||||||||| ||| |||| |||||| |||  | |||||||||||||||||||||||    
T  10833464 aatcaagactcccttagaagggactttttacaggactccgccatc-aaaatccaaaatttcatcgttta 10833397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 3094997 - 3095060
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||| |||| || |||||| |||||  |||| ||||||||||||||||||||||||||||    
T  3094997 tcccataggagggactacttacgcgactccacccctcaaaatccaaaatttcatcgtttagacc 3095060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 31519738 - 31519678
Alignment:
Q  145 cccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||| | |||||||||||||  |||| |||||||||||||| ||| |||||||||    
T  31519738 cccttagaagggacgtcttacgggactc--cccctcaaaatccaaaattccattgtttagacc 31519678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 40994982 - 40995044
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||| ||||||||  || ||||||||||| ||| | |||||||||||||| ||||||||||||    
T  40994982 tcccgtagaagggatttattacgggactccgcctctcaaaatccaaaattccatcgtttagac 40995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3094858 - 3094903
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  3094858 atattaatcttcctaactctcatccttctgttttgggtcattgtta 3094903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9073847 - 9073892
Alignment:
Q  160 tcttacgggactctgccccccaaaatccaaaatttcatcgtttaga 205  Q
    ||||||||||||| ||||| ||||||||||||||  ||||||||||    
T  9073847 tcttacgggactcagcccctcaaaatccaaaattctatcgtttaga 9073892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27927927 - 27927882
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  27927927 atattaatcttcctaactctcatccttctgttttgggtcattgtta 27927882  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34853501 - 34853546
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  34853501 atattaatcttcctaactctcatccttctgttttgggtcattgtta 34853546  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 41530886 - 41530942
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatt 193  Q
    ||||||| ||||||||||| | ||||||||||||||| | ||| ||||||||||||||    
T  41530886 atcaagactcccttagaagagacttcttacgggactccg-ccctcaaaatccaaaatt 41530942  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 42280877 - 42280832
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgtta 46  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||    
T  42280877 atattaatcttcctaactctcatccttctgttttgggtcattgtta 42280832  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1374113 - 1374165
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgttt 53  Q
    ||||||||| | |||||||||||| || |  ||||||||||||||||||||||    
T  1374113 atattaatcattctaactctcatccttatgttttaggtcattgttagttgttt 1374165  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 4259514 - 4259466
Alignment:
Q  159 ttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||||| ||||| ||||||||||||||  ||| ||||||||    
T  4259514 ttcttacgggactccgcccctcaaaatccaaaattctatcctttagacc 4259466  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 17119696 - 17119664
Alignment:
Q  175 ccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||| ||||||||||||||||||||||||||||    
T  17119696 cccctcaaaatccaaaatttcatcgtttagacc 17119664  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 23299 - 23348
Alignment:
Q  158 cttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||||| ||||| |||||||||||||| |||||||||||||    
T  23299 cttcttacgggactccgcccctcaaaatccaaaattccatcgtttagacc 23348  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 141826 - 141778
Alignment:
Q  159 ttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  141826 ttcttatgggactctgcccctcaaaatccaaaattccatcgtttagacc 141778  T

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Target: scaffold0564 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 4691 - 4745
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| |||||||||||||||  |||| |||||||||||||| ||||||||||||    
T  4691 aagggacttcttacgggactccacccctcaaaatccaaaattacatcgtttagac 4745  T

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Target: scaffold0508 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 3239 - 3177
Alignment:
Q  145 cccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    |||||||||||| ||||||| ||||| |  |||| |||||||||||||| |||||||||||||    
T  3239 cccttagaagggacttcttatgggaccccacccctcaaaatccaaaattccatcgtttagacc 3177  T

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Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 205753 - 205684
Alignment:
Q  136 atcaagaatcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||||| ||||||||||| | |||||||||||||||   ||| ||||||||||||||||||| |||||||    
T  205753 atcaagactcccttagaagagacttcttacgggactc-caccctcaaaatccaaaatttcatcatttagac 205684  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 140806 - 140860
Alignment:
Q  152 aagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    ||||| ||||||||||||||  ||||| ||||||||||| |||||||||||||||    
T  140806 aagggacttcttacgggacttcgcccctcaaaatccaaagtttcatcgtttagac 140860  T

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Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 140658 - 140709
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttgtt 52  Q
    |||||||||||||||||||||||| || |  ||||||||||||||| |||||    
T  140658 atattaatcttcctaactctcatccttttgttttaggtcattgttacttgtt 140709  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 174203 - 174146
Alignment:
Q  149 tagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagac 206  Q
    |||||||| ||||||||| ||||| ||||| |||||| ||||||| ||||||||||||    
T  174203 tagaagggacttcttacgagactccgcccctcaaaattcaaaattccatcgtttagac 174146  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 9344 - 9282
Alignment:
Q  144 tcccttagaagggtcttcttacgggactctgccccccaaaatccaaaatttcatcgtttagacc 207  Q
    ||||||||||||  ||||||||||||||| ||||| |||||| ||||||  |||||||||||||    
T  9344 tcccttagaagga-cttcttacgggactccgcccctcaaaattcaaaataccatcgtttagacc 9282  T

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Target: scaffold0091 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2049 - 2000
Alignment:
Q  1 atattaatcttcctaactctcatcgttctagtttaggtcattgttagttg 50  Q
    ||||||||||||||||||| |||| ||||  || ||||||||||||||||    
T  2049 atattaatcttcctaactcacatccttctgattaaggtcattgttagttg 2000  T

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