View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_high_56 (Length: 240)
Name: NF14366_high_56
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_high_56 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1059509 - 1059290
Alignment:
| Q |
1 |
tcattttgtgcttaagaattaacttcttatgattattatgtagatataaattatataatataccttgttggttctaatactggatttggaatggatacgg |
100 |
Q |
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| T |
1059509 |
tcattttgtgcttaagaattaacttcttatgattat---gtagatataaattatataatataccttgttggttctaatactggatttggaatggatacgg |
1059413 |
T |
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| Q |
101 |
tattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaactaattctgatgtaacactgt |
200 |
Q |
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| T |
1059412 |
tattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaactaattctgatgtaacactgt |
1059313 |
T |
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| Q |
201 |
tgaaaatctccttgtctttccct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1059312 |
tgaaaatctccttgtctttccct |
1059290 |
T |
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Back To:
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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 50580341 - 50580504
Alignment:
| Q |
60 |
ataccttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaac |
159 |
Q |
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| T |
50580341 |
ataccttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagac |
50580440 |
T |
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| Q |
160 |
caaagtcttcttcataccaactaattctgatgtaacactgttgaaaatctccttgtctttccct |
223 |
Q |
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| T |
50580441 |
caatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccct |
50580504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 10317623 - 10317701
Alignment:
| Q |
102 |
attcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac |
180 |
Q |
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|||||||||| ||||| ||||||||||||||||| ||||| | |||||| || || || | ||| |||||||||||||| |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaac |
10317701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 2924837 - 2924753
Alignment:
| Q |
100 |
gtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaactaat |
184 |
Q |
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| T |
2924837 |
gtattcatgcatgacccagttggatttttcacctctcggagctcttcctttgtagaaaaccaatgtttttttcatcccaattaat |
2924753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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