View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_high_69 (Length: 202)

Name: NF14366_high_69
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_high_69
NF14366_high_69
[»] chr4 (2 HSPs)
chr4 (18-184)||(36288732-36288898)
chr4 (139-179)||(14521763-14521803)
[»] chr1 (2 HSPs)
chr1 (111-184)||(12096769-12096842)
chr1 (22-72)||(12096723-12096773)
[»] chr2 (1 HSPs)
chr2 (139-179)||(2700388-2700428)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36288898 - 36288732
Alignment:
Q  18 atatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctccattatcatttgtattaagcctaaaaccaaaaaga 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36288898 atatccaagttggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctccagtatcatttgtattaagcctaaaaccaaaaaga 36288799  T
Q  118 taacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccaccttc 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36288798 taacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccaccttc 36288732  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 14521763 - 14521803
Alignment:
Q  139 acacctgtgaaaactctaccatcccaataaccacttctcca 179  Q
    ||||| || ||||| ||||||||||||||||||||||||||    
T  14521763 acaccggtaaaaaccctaccatcccaataaccacttctcca 14521803  T

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Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 12096769 - 12096842
Alignment:
Q  111 aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccaccttc 184  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12096769 aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttctccaccttc 12096842  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 12096723 - 12096773
Alignment:
Q  22 ccaagctggaaccttaccttatcactattttccaatgcttcatatacaaaa 72  Q
    |||||||| |||| || |||||| |||||||||||||||||||||| ||||    
T  12096723 ccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaaa 12096773  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 2700388 - 2700428
Alignment:
Q  139 acacctgtgaaaactctaccatcccaataaccacttctcca 179  Q
    ||||| || |||| |||||||||||||||||||||||||||    
T  2700388 acaccagtaaaaattctaccatcccaataaccacttctcca 2700428  T

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