View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_11 (Length: 600)

Name: NF14366_low_11
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_11
NF14366_low_11
[»] chr1 (28 HSPs)
chr1 (1-597)||(30688137-30688728)
chr1 (342-597)||(30697492-30697743)
chr1 (8-199)||(30697734-30697932)
chr1 (212-316)||(5453956-5454057)
chr1 (197-316)||(868533-868647)
chr1 (197-316)||(24177641-24177757)
chr1 (198-316)||(22346756-22346871)
chr1 (230-316)||(19035340-19035426)
chr1 (227-316)||(1114025-1114114)
chr1 (199-320)||(25375961-25376081)
chr1 (197-316)||(21472864-21472980)
chr1 (227-331)||(38842495-38842602)
chr1 (212-328)||(50161569-50161682)
chr1 (197-292)||(34644451-34644543)
chr1 (237-316)||(7213104-7213183)
chr1 (231-316)||(31737483-31737568)
chr1 (202-304)||(4611062-4611161)
chr1 (248-323)||(6790841-6790916)
chr1 (228-322)||(16323961-16324058)
chr1 (208-292)||(21934262-21934344)
chr1 (227-316)||(28493488-28493577)
chr1 (230-323)||(35387809-35387902)
chr1 (227-311)||(20259954-20260038)
chr1 (232-312)||(36486744-36486823)
chr1 (198-229)||(38731554-38731585)
chr1 (227-284)||(2898595-2898652)
chr1 (227-311)||(47459549-47459632)
chr1 (232-316)||(48841244-48841328)
[»] chr6 (13 HSPs)
chr6 (197-320)||(34168778-34168897)
chr6 (197-330)||(29338209-29338339)
chr6 (197-313)||(3137377-3137490)
chr6 (227-316)||(17249462-17249551)
chr6 (196-312)||(28009116-28009229)
chr6 (227-316)||(7749342-7749431)
chr6 (259-331)||(947947-948019)
chr6 (211-316)||(33220855-33220957)
chr6 (196-272)||(32115623-32115696)
chr6 (208-269)||(959489-959547)
chr6 (229-292)||(34554435-34554498)
chr6 (267-316)||(45818-45867)
chr6 (196-262)||(4206725-4206788)
[»] chr8 (27 HSPs)
chr8 (197-328)||(38815143-38815271)
chr8 (197-316)||(22589466-22589582)
chr8 (227-331)||(24320183-24320287)
chr8 (196-316)||(18804474-18804590)
chr8 (210-313)||(4699735-4699835)
chr8 (230-316)||(18596759-18596845)
chr8 (228-314)||(24350880-24350966)
chr8 (227-314)||(4073397-4073484)
chr8 (256-331)||(12751032-12751107)
chr8 (227-286)||(39434558-39434617)
chr8 (227-321)||(5329759-5329853)
chr8 (197-286)||(3187861-3187947)
chr8 (209-330)||(3863158-3863282)
chr8 (227-316)||(500103-500192)
chr8 (198-281)||(6592472-6592552)
chr8 (197-316)||(24124889-24125005)
chr8 (198-264)||(6618198-6618261)
chr8 (227-323)||(43823844-43823939)
chr8 (196-313)||(25021943-25022057)
chr8 (234-285)||(26033676-26033727)
chr8 (299-330)||(43542935-43542966)
chr8 (227-317)||(8619682-8619772)
chr8 (198-286)||(8882235-8882320)
chr8 (212-295)||(37514103-37514183)
chr8 (227-316)||(42659088-42659177)
chr8 (227-263)||(8227992-8228028)
chr8 (244-316)||(44337201-44337272)
[»] chr3 (23 HSPs)
chr3 (198-316)||(32546656-32546771)
chr3 (196-316)||(26772619-26772736)
chr3 (197-316)||(44694-44813)
chr3 (196-320)||(46940902-46941023)
chr3 (197-316)||(53785570-53785686)
chr3 (196-295)||(4669792-4669888)
chr3 (196-304)||(13582383-13582488)
chr3 (197-317)||(39583359-39583476)
chr3 (196-318)||(7502139-7502258)
chr3 (212-323)||(3643007-3643113)
chr3 (197-300)||(26856892-26856992)
chr3 (197-316)||(38671010-38671126)
chr3 (197-316)||(44198628-44198744)
chr3 (197-328)||(4472911-4473039)
chr3 (197-316)||(4763923-4764038)
chr3 (197-316)||(8592002-8592117)
chr3 (237-316)||(52741679-52741758)
chr3 (208-316)||(21552525-21552630)
chr3 (212-295)||(26276497-26276577)
chr3 (227-311)||(37133156-37133240)
chr3 (196-264)||(38145969-38146034)
chr3 (227-271)||(5338552-5338596)
chr3 (240-292)||(50446150-50446202)
[»] scaffold0009 (1 HSPs)
scaffold0009 (196-316)||(102967-103084)
[»] chr4 (25 HSPs)
chr4 (208-311)||(39001263-39001363)
chr4 (197-316)||(3329857-3329973)
chr4 (197-328)||(26521338-26521465)
chr4 (196-316)||(30940861-30940978)
chr4 (196-328)||(45661540-45661669)
chr4 (196-308)||(4419133-4419241)
chr4 (229-311)||(12053333-12053415)
chr4 (208-328)||(23604939-23605056)
chr4 (196-316)||(53619447-53619564)
chr4 (227-316)||(50001083-50001172)
chr4 (208-316)||(31846964-31847069)
chr4 (239-316)||(40392723-40392800)
chr4 (199-316)||(600824-600938)
chr4 (227-302)||(50464453-50464528)
chr4 (208-308)||(55933601-55933698)
chr4 (196-314)||(50442608-50442723)
chr4 (196-305)||(23255585-23255691)
chr4 (196-316)||(34107825-34107942)
chr4 (229-295)||(50463102-50463168)
chr4 (199-330)||(9601059-9601184)
chr4 (196-328)||(42455736-42455865)
chr4 (227-287)||(2852325-2852385)
chr4 (227-305)||(7536728-7536806)
chr4 (196-264)||(23242813-23242878)
chr4 (229-330)||(45760950-45761051)
[»] chr2 (17 HSPs)
chr2 (236-330)||(30602336-30602430)
chr2 (196-316)||(17344499-17344616)
chr2 (196-316)||(13413212-13413329)
chr2 (201-316)||(4413200-4413312)
chr2 (232-316)||(3208406-3208490)
chr2 (240-323)||(41702126-41702209)
chr2 (196-316)||(41868037-41868153)
chr2 (197-304)||(9685545-9685649)
chr2 (227-316)||(18745111-18745200)
chr2 (197-316)||(27494172-27494288)
chr2 (227-323)||(2626004-2626100)
chr2 (208-316)||(28224861-28224966)
chr2 (226-316)||(42122678-42122768)
chr2 (259-328)||(10587144-10587213)
chr2 (227-316)||(15515304-15515393)
chr2 (234-302)||(32612326-32612394)
chr2 (211-292)||(11921348-11921426)
[»] chr5 (19 HSPs)
chr5 (197-316)||(35310309-35310425)
chr5 (208-316)||(13167051-13167156)
chr5 (196-328)||(37873767-37873897)
chr5 (197-316)||(32269927-32270042)
chr5 (196-316)||(42921559-42921675)
chr5 (230-295)||(11005760-11005825)
chr5 (197-316)||(25663162-25663278)
chr5 (197-295)||(2566225-2566320)
chr5 (197-311)||(23023461-23023572)
chr5 (208-304)||(15292166-15292259)
chr5 (196-320)||(43349917-43350038)
chr5 (198-308)||(430471-430578)
chr5 (234-310)||(2917524-2917601)
chr5 (233-302)||(23092694-23092763)
chr5 (255-316)||(33692237-33692298)
chr5 (266-316)||(27913491-27913541)
chr5 (196-263)||(22188784-22188848)
chr5 (197-316)||(27336556-27336672)
chr5 (227-295)||(15506772-15506840)
[»] scaffold0406 (1 HSPs)
scaffold0406 (228-311)||(6754-6837)
[»] chr7 (27 HSPs)
chr7 (196-316)||(28517416-28517533)
chr7 (208-304)||(45613983-45614076)
chr7 (197-316)||(21326968-21327084)
chr7 (197-304)||(27027760-27027864)
chr7 (197-304)||(982822-982926)
chr7 (227-316)||(45003054-45003143)
chr7 (266-330)||(2520917-2520981)
chr7 (201-323)||(2904235-2904353)
chr7 (199-316)||(45974731-45974845)
chr7 (243-316)||(38766185-38766258)
chr7 (208-311)||(40726621-40726721)
chr7 (197-264)||(48539094-48539158)
chr7 (227-311)||(5825139-5825223)
chr7 (197-304)||(19277164-19277270)
chr7 (196-329)||(9281265-9281395)
chr7 (196-329)||(9292236-9292366)
chr7 (196-328)||(10904967-10905096)
chr7 (197-316)||(4501120-4501236)
chr7 (201-304)||(22197860-22197960)
chr7 (201-304)||(22239861-22239961)
chr7 (197-284)||(24527482-24527566)
chr7 (197-316)||(25187061-25187177)
chr7 (255-316)||(38832163-38832224)
chr7 (196-263)||(43856788-43856852)
chr7 (200-264)||(42295317-42295378)
chr7 (227-316)||(5972373-5972462)
chr7 (197-287)||(41117900-41117988)
[»] scaffold0148 (1 HSPs)
scaffold0148 (208-316)||(33111-33216)
[»] scaffold0309 (1 HSPs)
scaffold0309 (227-316)||(5185-5274)
[»] scaffold1768 (1 HSPs)
scaffold1768 (197-316)||(314-430)
[»] scaffold0470 (1 HSPs)
scaffold0470 (198-264)||(7516-7579)


Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Complemental strand, 30688728 - 30688137
Alignment:
Q  1 agaacacaaaatttatgtgcttagacacttcttgcatatcttgagcaactaacctgaattgtgcatcactctacaaattttagtactctcacttaagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  30688728 agaacacaaaatttatgtgcttagacacttcttgcatatcttgagcaactaacctgaattgcgtatcactctacaaattttagtactctcacttaagagt 30688629  T
Q  101 tacaagaaatgataaaacactatcattacaagaaactctctcacacaattgatcacacacttgctttcttctcttgctatatggattgagatgttacaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688628 tacaagaaatgataaaacactatcattacaagaaactctc--acacaattgatcacacacttgctttcttctcttgctatatggattgagatgttacaat 30688531  T
Q  201 gtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatcta 300  Q
    |||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30688530 gtcatgactcctgggtccatgaat---gttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatcta 30688434  T
Q  301 ttcatgtgtaattaatcattgatctataaatggtattctacgatgctacaacactttacaagacctccaattttataggaaagatcatttctaatcatga 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688433 ttcatgtgtaattaatcattaatctataaatggtattctacgatgctacaacactttacaagacctccaattttataggaaagatcatttctaatcatga 30688334  T
Q  401 atgtgatataccatgtattattgacctcatattatgaaatgcatctctcaaatttctaccatttgtattaggatttattatagtttcaaaattataaaac 500  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30688333 atgtgatataccatgtattattaacctcatattatgaaatgcatctctcaaatttctaccatttgtattaggatttattatagtttcaaaattataaaac 30688234  T
Q  501 ttatgtatagactatagagatctatctcccttgattccctttgagctccctctcatcgcctaattgcatcgtcaattctatccctagcttacttgct 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30688233 ttatgtatagactatagagatctatctcccttgattccctttgagctccctctcatcgcctaattgcatcgtcaattctatccctagcttacctgct 30688137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 342 - 597
Target Start/End: Complemental strand, 30697743 - 30697492
Alignment:
Q  342 gatgctacaacactttacaagacctccaattttataggaaaga---tcatttctaatcatgaatgtgatataccatgtattattgacctcatattatgaa 438  Q
    |||||||||||||||||||||||||||||||| ||||||||||   |||| |||| ||||||||||||||||| |||||||||  ||||||||| |||||    
T  30697743 gatgctacaacactttacaagacctccaattt-ataggaaagaagatcatatctattcatgaatgtgatatactatgtattatcaacctcatatcatgaa 30697645  T
Q  439 atgcatctctcaaatttctaccatttgtattaggatttattatagtttcaaaattataaaacttatgtatagactatagagatctatctcccttgattcc 538  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||    ||||||||||||||||||||||||||    
T  30697644 atgcatctcttaaatttctaccatttgtattaggatttattatagtttcaaaattgtaaaactaat-tat---gtatagagatctatctcccttgattcc 30697549  T
Q  539 ctttgagctccctctcatcgcctaattgcatcgtcaattctatccctagcttacttgct 597  Q
     |||  |||||||||||| | ||||||  ||||| |||||||||| |||||||||||||    
T  30697548 tttt--gctccctctcattgtctaattctatcgttaattctatccttagcttacttgct 30697492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 30697932 - 30697734
Alignment:
Q  8 aaaatttatgtgcttagacacttcttgcatatcttgagcaactaacctgaattgtgcatcactctacaaattttagtactctca----cttaagagttac 103  Q
    |||||||||||| |||||||||||||| ||||||||||||||||| |||||||| | ||| |||||||||||| ||||||||||    ||||||||||||    
T  30697932 aaaatttatgtggttagacacttcttgtatatcttgagcaactaaactgaattgcgtatcgctctacaaatttaagtactctcacttacttaagagttac 30697833  T
Q  104 aagaaatgata----aaacactatca-ttacaagaaactctctcacacaattgatcacacacttgctttcttctcttgctatatggattgagatgttaca 198  Q
    |||||||||||    ||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  30697832 aagaaatgataaattaaacactatcatttgcaagaaa--ctctcacacaattgatcacacacttgctttcttctcttgctatatggtttgagatgctaca 30697735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 5454057 - 5453956
Alignment:
Q  212 taggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||||   ||||||||||| |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||    
T  5454057 taggtccatgaat---gttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaa 5453961  T
Q  312 ttaat 316  Q
     ||||    
T  5453960 gtaat 5453956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 868533 - 868647
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||| ||||||||||     |||||| || |||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||     
T  868533 caatgtcatgtctcctaagtccatgaat-----tgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 868627  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  868628 tctattcaagtgtaaataat 868647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 24177641 - 24177757
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||  |||||||||||||||||   |||||||| ||||||||||||||||  | ||||||||| ||||||  ||||||||||||||||||| |     
T  24177641 caatgtcatatctcctaggtccatgaat---gttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagcttgttgcccgcttgtct 24177737  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  24177738 tctattcaagtgtaaataat 24177757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 22346871 - 22346756
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccat 297  Q
    ||||||||| |||||||||  ||||||   |||||||| ||||||||| ||||||  ||||||||||| |||||| |||||||||||| ||||||||| |    
T  22346871 aatgtcatgtctcctaggtttatgaat---gttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgcctt 22346775  T
Q  298 ctattcatgtgtaattaat 316  Q
    ||||||| |||||| ||||    
T  22346774 ctattcaagtgtaaataat 22346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 19035426 - 19035340
Alignment:
Q  230 tgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||| ||| ||||| |||||||| |||||| ||||    
T  19035426 tgtgttcacgaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttctattcaagtgtaaataat 19035340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 1114025 - 1114114
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||||||||||||||  ||||||||||| ||| || | |||||||||||||||||| | |||||||| |||||| ||||    
T  1114025 tgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttctattcaagtgtaaataat 1114114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 25375961 - 25376081
Alignment:
Q  199 atgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatc 298  Q
    ||||||||||||||| || ||||||| | |||||||||| ||| ||| |||||  |||||||||||||||| ||||| | |||||||   | ||||| ||    
T  25375961 atgtcatgactcctatgttcatgaatgt-gttgtgtttatgagaattagttttactatccaaaaaggcctaacgacgtaacttgttgtttgtttgccttc 25376059  T
Q  299 tattcatgtgtaattaatcatt 320  Q
    ||||||||||||||||||||||    
T  25376060 tattcatgtgtaattaatcatt 25376081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 21472980 - 21472864
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   |||| ||| | ||||| ||||||||  ||||||||||| |||||| |||| ||| ||||||||||||      
T  21472980 caatgtcatgtctcctaggtccatgaat---gttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaacttattgcccgcttgcat 21472884  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  21472883 tctattcaagtgtaaataat 21472864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 38842602 - 38842495
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagc---ttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    ||||||| |||||||||||| ||||| || | ||||||||||| ||||| ||    ||||||||| |||||  |||||||||||||||||||||||||||    
T  38842602 tgttgtggttacgaggattgattttgctacctaaaaaggcctaacgacgtagtagtttgttgcccacttgctttctattcatgtgtaattaatcattgat 38842503  T
Q  324 ctataaat 331  Q
     |||||||    
T  38842502 atataaat 38842495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 50161569 - 50161682
Alignment:
Q  212 taggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||||   |||||||||| ||||||||  |||| |||| |||| ||| ||||| | |||||||||||||  ||||| |||||| || |||||    
T  50161569 taggtccatgaat---gttgtgtttaagaggattgaatttgctatctaaaacggcttagcggcacagcttgttgcccttttgccttctatttatttgtaa 50161665  T
Q  312 ttaatcattgatctata 328  Q
    |||||||||||| ||||    
T  50161666 ttaatcattgatatata 50161682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 34644543 - 34644451
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgctt 292  Q
    |||||| ||| |||||||||||||||||   ||||||||||||| ||||| |||||  ||||||||| | |||||| ||||| |||||||||||||    
T  34644543 caatgttatgtctcctaggtccatgaat---gttgtgtttacgatgattgattttgccatccaaaaaagtctagcggcgcagtttgttgcccgctt 34644451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 7213183 - 7213104
Alignment:
Q  237 acgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||| ||||||||||   ||||||||||| |||||| |||| ||||||||||||||||| |||||||| |||||| ||||    
T  7213183 acgatgattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttctattcaagtgtaaataat 7213104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 31737483 - 31737568
Alignment:
Q  231 gtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||||| |||||  |||||||||||| | ||| |||||||||||| | | ||||| |||||||| |||||| ||||    
T  31737483 gtgtttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttgtctgtttgccttctattcaagtgtaaataat 31737568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 4611161 - 4611062
Alignment:
Q  202 tcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctat 301  Q
    ||||| ||||||||||||||||||||||   ||| |||| ||||| |||||| ||||||||||| ||| |  | |||||||||| ||||||||| | |||    
T  4611161 tcatgtctcctaggtccatgaatattgt---gttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgccttttat 4611065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 323
Target Start/End: Original strand, 6790841 - 6790916
Alignment:
Q  248 ttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    |||||| |||||||||| ||||||| | ||| ||||| ||||| |||| ||||||||||||||| |||| ||||||    
T  6790841 ttttgtcatccaaaaagacctagcggcacagtttgttacccgcctgccttctattcatgtgtaagtaattattgat 6790916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 16323961 - 16324058
Alignment:
Q  228 gttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagc---ttgttgcccgcttgccatctattcatgtgtaattaatcattga 322  Q
    |||||||||||||||||||||||    ||||||||||||||||    |||||   ||||||| |||||||  ||||||||||||||||||||| ||||    
T  16323961 gttgtgtttacgaggattggtttaaccatccaaaaaggcctagtagtgcagcttgttgttgctcgcttgctttctattcatgtgtaattaatcgttga 16324058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 21934344 - 21934262
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgctt 292  Q
    ||||||| ||||||||| ||  ||| |||| ||||||||||||||  |||||||||||  ||||| |||||||||||||| ||||    
T  21934344 ctcctagttccatgaatgtt--tgtatttaagaggattggttttgccatccaaaaagggttagcggcgcagcttgttgcctgctt 21934262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 28493488 - 28493577
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||| |||| |||||||||| |||||  ||||||||||| |||||| ||||| |||||| ||| ||| | |||||||| |||||| ||||    
T  28493488 tgttatgttcacgaggattgattttgccatccaaaaaggtctagcggcgcagtttgttgtccgtttgtcttctattcaagtgtaaataat 28493577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 35387809 - 35387902
Alignment:
Q  230 tgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    ||||||||| | |||||||||||| || |||||| |  || || || ||||||||| || |||| | |||||||||||||||||| ||||||||    
T  35387809 tgtgtttacaatgattggttttgtcattcaaaaaagtttaacggcgtagcttgttgtccacttgtcttctattcatgtgtaattagtcattgat 35387902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 20259954 - 20260038
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||   ||||||||||||  ||||||||||| |||||| ||||| |||||||||  ||| | |||||||| ||||||    
T  20259954 tgttgtgtttatatggattggttttgccatccaaaaaggtctagcggcgcagtttgttgccccattgtcttctattcaagtgtaa 20260038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 36486823 - 36486744
Alignment:
Q  232 tgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaat 312  Q
    ||||||||| |||||||||| |||||||||||| |||| || || |||||||||   | ||||| ||||||||||||||||    
T  36486823 tgtttacgatgattggttttattatccaaaaagacctaacggcggagcttgttg-ttgtttgccttctattcatgtgtaat 36486744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 229
Target Start/End: Complemental strand, 38731585 - 38731554
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgt 229  Q
    ||||||||||||||||||||||||||||||||    
T  38731585 aatgtcatgactcctaggtccatgaatattgt 38731554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 2898652 - 2898595
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgtt 284  Q
    ||||||||||| |||||||| |||||  |||||||||||| ||||| || ||||||||    
T  2898652 tgttgtgtttaagaggattgattttgccatccaaaaaggcttagcggcgtagcttgtt 2898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 47459632 - 47459549
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    ||||||||||||||| |||| ||| |  || |||||||| |||||| |||||||||||| | ||||| |  ||||||||||||||    
T  47459632 tgttgtgtttacgagaattgatttagccattcaaaaaggtctagcg-cgcagcttgttgtctgcttggctcctattcatgtgtaa 47459549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 48841244 - 48841328
Alignment:
Q  232 tgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||| |||||  ||||||||| | |||||  |||| ||||||| |||||| ||   ||||||||||||| ||||    
T  48841244 tgtttacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtccgcttacctcatattcatgtgtaagtaat 48841328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 5e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 34168897 - 34168778
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||||||||||| |||||||||   |||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||| |||||||||||     
T  34168897 caatgtcatgactcctagatccatgaat---gttgtgtt-acgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgcct 34168802  T
Q  297 tctattcatgtgtaattaatcatt 320  Q
    ||||||||||||||||||||||||    
T  34168801 tctattcatgtgtaattaatcatt 34168778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 29338209 - 29338339
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    ||||||||||||||||||||||||||||   ||||||||||| ||||||| ||||  ||||||||| ||||||||   |||||||||||||| |||| |     
T  29338209 caatgtcatgactcctaggtccatgaat---gttgtgtttacaaggattgatttttctatccaaaatggcctagcagtgcagcttgttgcccacttgtct 29338305  T
Q  297 tctattcatgtgtaattaatcattgatctataaa 330  Q
    | |||||||| | |||||||||||||| ||||||    
T  29338306 tttattcatgcgcaattaatcattgatatataaa 29338339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 3137377 - 3137490
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   |||||||||||||||||||||||||  |||||||||||| ||||   ||| ||||||||||| |||||     
T  3137377 caatgtcatgtctcctaggtccatgaat---gttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgttgcccgtttgcct 3137473  T
Q  297 tctattcatgtgtaatt 313  Q
    || ||||||||||||||    
T  3137474 tccattcatgtgtaatt 3137490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 17249462 - 17249551
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||  |||||||||| ||| ||||    
T  17249462 tgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaat 17249551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 28009116 - 28009229
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||||||||||||||||    ||||| ||||| || |||| |||||  ||||||||||||||| ||||||||||| ||| ||| |||||    
T  28009116 acaatgtcatgactcctaggtccatgaac---gttgtctttaccagaattgattttgcaatccaaaaaggcctaacgacgcagcttattgtccgtttgcc 28009212  T
Q  296 atctattcatgtgtaat 312  Q
     ||||||||||||||||    
T  28009213 ttctattcatgtgtaat 28009229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 7749431 - 7749342
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||||||||||||||  |||| |||||| ||||||  |||||||||||||||||||||  |||||||||||||| ||||    
T  7749431 tgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcctcctattcatgtgtaactaat 7749342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Complemental strand, 948019 - 947947
Alignment:
Q  259 aaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctataaat 331  Q
    |||||||||||||| |||||||||| | ||||||||| | ||||||||||||||||||||||||  |||||||    
T  948019 aaaaaggcctagcggcgcagcttgtagaccgcttgccttatattcatgtgtaattaatcattgacatataaat 947947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 211 - 316
Target Start/End: Original strand, 33220855 - 33220957
Alignment:
Q  211 ctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgta 310  Q
    ||||||||||||||   |||| ||||||||  ||||||||||  |||| |||||| |||||| |||||||||||| |||||||||  |||||||||||||    
T  33220855 ctaggtccatgaat---gttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttgttggccgcttgcctcctattcatgtgta 33220951  T
Q  311 attaat 316  Q
    | ||||    
T  33220952 agtaat 33220957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 32115696 - 32115623
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcg 272  Q
    ||||||||||| |||||||||||||||||   ||||||||||||| ||||| ||||| |||| ||||||| ||||||    
T  32115696 acaatgtcatgtctcctaggtccatgaat---gttgtgtttacgatgattgattttgctatctaaaaaggtctagcg 32115623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 959547 - 959489
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggccta 269  Q
    |||||||||||||||||   ||||||||||||||||||| |||||| ||| |||||||||||    
T  959547 ctcctaggtccatgaat---gttgtgtttacgaggattgattttgtcatctaaaaaggccta 959489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 34554435 - 34554498
Alignment:
Q  229 ttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgctt 292  Q
    |||||||||||||||||| |||||| |||||||||||||||| | | |||||| |||| |||||    
T  34554435 ttgtgtttacgaggattgattttgtcatccaaaaaggcctagtggcacagcttattgctcgctt 34554498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 45818 - 45867
Alignment:
Q  267 ctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||| ||||||||||||||||||||||  ||||||| |||||| ||||    
T  45818 ctagcggcgcagcttgttgcccgcttgcctcctattcaagtgtaaataat 45867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 4206725 - 4206788
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaa 262  Q
    ||||||||||| | |||||||| |||||||| ||   ||||||||||||||||||||  ||||||||    
T  4206725 acaatgtcatgtcacctaggtcaatgaatatagt---gtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 38815271 - 38815143
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   ||||||||||||||||||||||||   |||||||||||| ||||| ||||||||||||||||||||||     
T  38815271 caatgtcatgtctcctaggtccatgaat---gttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccgcttgcct 38815175  T
Q  297 tctattcatgtgtaattaatcattgatctata 328  Q
    |||||||||||||||  |||| ||||| ||||    
T  38815174 tctattcatgtgtaagcaatccttgatatata 38815143  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 22589466 - 22589582
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||| |||||| ||||||   |||||||| ||||||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||     
T  22589466 caatgtcatgtctcataggtctatgaat---gttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 22589562  T
Q  297 tctattcatgtgtaattaat 316  Q
    | |||||| |||||| ||||    
T  22589563 tttattcaagtgtaaataat 22589582  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 24320287 - 24320183
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatcta 326  Q
    |||||||||||||||||||| ||||| |||||||||||| |||||   ||||||||||||| | ||| | ||||||| ||||||||||||||||||| ||    
T  24320287 tgttgtgtttacgaggattgattttgatatccaaaaaggtctagcagtgcagcttgttgcctgtttgtcttctattcgtgtgtaattaatcattgatgta 24320188  T
Q  327 taaat 331  Q
    |||||    
T  24320187 taaat 24320183  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 18804590 - 18804474
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||||||||| ||     | |||| |||||||||||||||||||||  ||||||||||| |||||| |||||||||||||| |||||||    
T  18804590 acaatgtcatgactcctaggttcag----agtgttttgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgcc 18804495  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  18804494 ttctattcaagtgtaaataat 18804474  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 4699835 - 4699735
Alignment:
Q  210 cctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgt 309  Q
    |||||||||||||||   ||||||||||| |||||| ||||||  |||||||||||| ||| | ||||||||||||||| || ||||| || ||||||||    
T  4699835 cctaggtccatgaat---gttgtgtttacaaggattagttttgccatccaaaaaggcttagtggcgcagcttgttgccccctcgccatatactcatgtgt 4699739  T
Q  310 aatt 313  Q
    ||||    
T  4699738 aatt 4699735  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 18596759 - 18596845
Alignment:
Q  230 tgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||| ||||||||||||||||  |||| |||||| |||||| |||||||||||| | ||||||| |||||||| |||||| ||||    
T  18596759 tgtgttcacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttctattcaagtgtaaataat 18596845  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 24350880 - 24350966
Alignment:
Q  228 gttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaatta 314  Q
    |||||||||||||||||||||||||   |||||||| |||||| | | |||| ||||||||||||  | ||||||||||||||||||    
T  24350880 gttgtgtttacgaggattggttttgccctccaaaaaagcctagtggcccagcctgttgcccgcttatcttctattcatgtgtaatta 24350966  T

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Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 4073484 - 4073397
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaatta 314  Q
    ||||||||||||||| |||| |||| | ||||||||| || ||||||| || |||||| |||||||||| || | |||||||||||||    
T  4073484 tgttgtgtttacgagaattgattttatcatccaaaaaagcttagcgacacaacttgtttcccgcttgccttccaatcatgtgtaatta 4073397  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 331
Target Start/End: Original strand, 12751032 - 12751107
Alignment:
Q  256 tccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctataaat 331  Q
    ||||||||||||||||  |||||||||||| | | ||||  |||||| |||||||||||||||||||| |||||||    
T  12751032 tccaaaaaggcctagcagcgcagcttgttgtcagtttgctttctatttatgtgtaattaatcattgatatataaat 12751107  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 39434617 - 39434558
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgc 286  Q
    |||||||||||||||||||| |||||  ||||||||||| |||||| |||||||||||||    
T  39434617 tgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgc 39434558  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 5329759 - 5329853
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattg 321  Q
    ||||||||||| |||||||  |||||  ||||||||||||||| |||| || ||| || | |  ||||| |||||||||||||||||||||||||    
T  5329759 tgttgtgtttatgaggattaattttgacatccaaaaaggcctaacgacacaacttatttcacatttgccttctattcatgtgtaattaatcattg 5329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 3187947 - 3187861
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgc 286  Q
    |||||| ||| |||||||||||||||||   |||||||||||||| ||||||||||  ||||||||||| ||| ||  ||||||| ||||    
T  3187947 caatgttatgtctcctaggtccatgaat---gttgtgtttacgagaattggttttgccatccaaaaaggtctaacggtgcagcttattgc 3187861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 3863282 - 3863158
Alignment:
Q  209 tcctaggtccatgaatattgttgtgtttacgaggattggttttgt---tatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcat 305  Q
    ||||| ||| |||||||||||||||||||||||||||| | ||||   ||   |||||  || || | ||||||||||||  || ||||  |||||||||    
T  3863282 tcctaagtctatgaatattgttgtgtttacgaggattgatattgtcaataaaaaaaaaaaccgagtggcgcagcttgttggtcgtttgcattctattcat 3863183  T
Q  306 gtgtaattaatcattgatctataaa 330  Q
    |||||||||||| ||||| ||||||    
T  3863182 gtgtaattaatccttgatatataaa 3863158  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 500192 - 500103
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||||||||| ||||   || ||||||||| |  || | |||||| ||||||||||||| |||||||| |||||| ||||    
T  500192 tgttgtgtttacgaggattgattttaccattcaaaaaggcttgacggcacagcttattgcccgcttgccttctattcaagtgtaaataat 500103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 6592552 - 6592472
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagctt 281  Q
    ||||||||| ||| ||||| |||||||   |||||||||||||| ||||||||||| ||||| ||||| |||||| | ||||||    
T  6592552 aatgtcatgtctcataggttcatgaat---gttgtgtttacgagtattggttttgtcatccagaaaggtctagcggcacagctt 6592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 24125005 - 24124889
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||| |||||||||||||   ||||||||||| |||||| ||||||  ||||  ||| || | ||| |||||||| ||  |||||||||     
T  24125005 caatgtcatgtctcataggtccatgaat---gttgtgtttacaaggattagttttgccatccgtaaaagcttggcggcgcagcttttttgccgcttgcct 24124909  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  24124908 tctattcaagtgtaaataat 24124889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 6618261 - 6618198
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    ||||||||| ||| |||||||||||||   ||| |||||||||| ||||||||||| ||||||||||    
T  6618261 aatgtcatgtctcataggtccatgaat---gttatgtttacgagtattggttttgtcatccaaaaag 6618198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 323
Target Start/End: Complemental strand, 43823939 - 43823844
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    |||||||||||||   ||||| ||||| ||| ||||||||||||   |||| ||| |||||| |||||| |||||| |||||||||||||| |||||    
T  43823939 tgttgtgtttacggcaattgggtttgtcatctaaaaaggcctagttgcgcaactttttgccctcttgccttctatt-atgtgtaattaatccttgat 43823844  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 25021943 - 25022057
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||  |||||||||||| ||||   ||||||||||| | ||||| |||| | |||||||||   ||||||||| |||||||||   | |||||    
T  25021943 acaatgtcatatctcctaggtccaggaat---gttgtgtttacaatgattgattttatcatccaaaaaattctagcgacgtagcttgttgtttgtttgcc 25022039  T
Q  296 atctattcatgtgtaatt 313  Q
     |||||||||||| ||||    
T  25022040 ttctattcatgtgaaatt 25022057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 26033676 - 26033727
Alignment:
Q  234 tttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttg 285  Q
    |||| ||||||||||||||| ||| |||||||  ||||||||||||||||||    
T  26033676 tttaagaggattggttttgtcatctaaaaaggattagcgacgcagcttgttg 26033727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 43542935 - 43542966
Alignment:
Q  299 tattcatgtgtaattaatcattgatctataaa 330  Q
    ||||||||||||||||||||||||||||||||    
T  43542935 tattcatgtgtaattaatcattgatctataaa 43542966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 8619772 - 8619682
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatc 317  Q
    |||||||||||||| ||||| |||||   | |||||||||||| | | ||||||| ||| ||||||  | | |||||||||||||||||||    
T  8619772 tgttgtgtttacgacgattgattttgcctttcaaaaaggcctaacaatgcagcttattgtccgcttaacttttattcatgtgtaattaatc 8619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 8882320 - 8882235
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgc 286  Q
    ||||||||| ||||||||||||||||   |||||||||||||||||||  |||||  ||| ||||| |  || || |||||||||||||    
T  8882320 aatgtcatgtctcctaggtccatgaa---tgttgtgtttacgaggattaattttgccatcaaaaaatgtttaacggcgcagcttgttgc 8882235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 37514183 - 37514103
Alignment:
Q  212 taggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||||||   ||||| || |||||||||| | |||  | ||||||||| ||| || ||||||||||||||||||||||    
T  37514183 taggtccatgaat---gttgtattcacgaggattgatcttgccacccaaaaaggtctaacggcgcagcttgttgcccgcttgcc 37514103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 42659177 - 42659088
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||||||||  |||||| ||||||||||| ||| ||    | ||||||| |||||||||  |||||| ||||||| ||||    
T  42659177 tgttgtgtttacgaggattaattttgtcatccaaaaaggtctaacggtataacttgttgtccgcttgcctcctattcttgtgtaagtaat 42659088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 8227992 - 8228028
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaa 263  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  8227992 tgttgtgtttacgaggaatggttttgctatccaaaaa 8228028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 44337272 - 44337201
Alignment:
Q  244 ttggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||  ||||||||||| | |||| | ||||||||||| ||||||||  |||||||||||||| ||||    
T  44337272 ttggttttgccatccaaaaaggtccagcggc-cagcttgttgctcgcttgcctcctattcatgtgtaagtaat 44337201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 32546771 - 32546656
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccat 297  Q
    ||||||||| |||||||||||||||||   |||||||| ||||||||||||||||  ||||||||||| |||||| |||||||||||||||||||||| |    
T  32546771 aatgtcatgtctcctaggtccatgaat---gttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctt 32546675  T
Q  298 ctattcatgtgtaattaat 316  Q
    ||||||| |||||| ||||    
T  32546674 ctattcaagtgtaaataat 32546656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 26772736 - 26772619
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| |||||||||||||||||   ||||||||||||||||||| |||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  26772736 acaatgttatgtctcctaggtccatgaat---gttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcc 26772640  T
Q  296 atctattcatgtgtaattaat 316  Q
      |||||||||||||| ||||    
T  26772639 tcctattcatgtgtaagtaat 26772619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 44813 - 44694
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    ||||||||||  |||||||||||||||| |||||||||| || |||||| ||||||  ||||||||||| |||||| ||||| ||||||||||||||||     
T  44813 caatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgttttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgcct 44714  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  44713 tctattcaagtgtaaataat 44694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 320
Target Start/End: Original strand, 46940902 - 46941023
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||| ||||| |||||||   |||||||||||||  |||| ||||||||||||||||| |||||||  ||| ||||||||| | || ||    
T  46940902 acaatgtcatgactcataggttcatgaat---gttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgcctgtttacc 46940998  T
Q  296 atctattcatgtgtaattaatcatt 320  Q
     ||||||||||||||||||||||||    
T  46940999 ttctattcatgtgtaattaatcatt 46941023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 53785686 - 53785570
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   ||| |||||||||||||||||||||  |||||| |||| | |||| || |||||||||||||||||||     
T  53785686 caatgtcatgtctcctaggtccatgaat---gttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcccgcttgcct 53785590  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  53785589 tctattcaagtgtaaataat 53785570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 4669792 - 4669888
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| ||||| |||||||||||   ||||||||||||| ||||| ||||||||||||||||||  | ||| ||||||||||||||||||||||    
T  4669792 acaatgtcatgtctccttggtccatgaat---gttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgcttgcc 4669888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 13582488 - 13582383
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||||||| ||||||||   ||||||||||||| ||||| ||| |  |||||||||||||||||||||| | || |||||||||||||    
T  13582488 acaatgtcatgtctcctaggaccatgaat---gttgtgtttacgaagattgatttagccatccaaaaaggcctagcgacgctgtttattgcccgcttgcc 13582392  T
Q  296 atctattca 304  Q
     ||||||||    
T  13582391 ttctattca 13582383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 39583359 - 39583476
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||||||| |||||||   || |||||||||||||||| |||||  ||||||||||| |||||| |||| ||||||| | ||||||      
T  39583359 caatgtcatgtctcctaggttcatgaat---gtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctt 39583455  T
Q  297 tctattcatgtgtaattaatc 317  Q
    ||||||||||||||| |||||    
T  39583456 tctattcatgtgtaagtaatc 39583476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 196 - 318
Target Start/End: Original strand, 7502139 - 7502258
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||| ||| |||||||||||| |   ||||||||  |||| ||||| ||||||||||| ||||| ||| |||||||||||  |||||      
T  7502139 acaatgtcatgactcatagatccatgaatattat---gtttacgataattgattttgctatccaaaaagacctagtgactcagcttgttgcttgcttgta 7502235  T
Q  296 atctattcatgtgtaattaatca 318  Q
     ||||||||||||||||||||||    
T  7502236 ttctattcatgtgtaattaatca 7502258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 3643113 - 3643007
Alignment:
Q  212 taggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||||   |||||||||  || ||||| |||||| |||| |||||||||| ||||||||||| ||||||||||||| ||||||  |||||||    
T  3643113 taggtccatgaat---gttgtgttt--gatgattgattttgtcatccgaaaaggcctaacgacgcagcttattgcccgcttgccttctattattgtgtaa 3643019  T
Q  312 ttaatcattgat 323  Q
    |||||| |||||    
T  3643018 ttaatccttgat 3643007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 26856892 - 26856992
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||  ||||||   |||||| || ||||||||||||||   |||||||||||||||||| ||||||||||||| ||||||||     
T  26856892 caatgtcatgtctcctaggtttatgaat---gttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 26856988  T
Q  297 tcta 300  Q
    ||||    
T  26856989 tcta 26856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 38671010 - 38671126
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||||||||||||||   ||||||| |||||||||||||||||  ||| ||||| | |||||| |||||||||||| |||||| ||     
T  38671010 caatgttatgtctcctaggtccatgaat---gttgtgtgtacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttgtccgcttacct 38671106  T
Q  297 tctattcatgtgtaattaat 316  Q
     ||||| |||||||| ||||    
T  38671107 cctatttatgtgtaaataat 38671126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 44198744 - 44198628
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   ||||||||| |||  |||| |||||  |||||||||||   |||||| |||||||||| |||||||||     
T  44198744 caatgtcatgtctcctaggtccatgaat---gttgtgtttgcgataattgattttgccatccaaaaaggttgagcgacacagcttgttgtccgcttgcct 44198648  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  44198647 tctattcaagtgtaaataat 44198628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 4473039 - 4472911
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||| ||||| |||||||||| |||||||||||   ||||||||| ||||||||||| ||||||||| | |||  ||   ||||||||  ||||||| |     
T  4473039 caatttcatgtctcctaggtctatgaatattgt---gtttacgagaattggttttgtcatccaaaaaagtctaatgatatagcttgttatccgcttgtct 4472943  T
Q  297 tctattcatgtgtaattaatcattgatctata 328  Q
    ||||||||||||||| |||||| |||| ||||    
T  4472942 tctattcatgtgtaagtaatcaatgatatata 4472911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 4763923 - 4764038
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||| |||||||||||   |||||||||||||||||| |  |||  |||||||||||| | | | |||| |||||||||||||||||     
T  4763923 caatgtcatgtctcct-ggtccatgaat---gttgtgtttacgaggattagaattgccatccaaaaaggcttggtggcgcaacttgttgcccgcttgcct 4764018  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  4764019 tctattcaagtgtaaataat 4764038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 8592117 - 8592002
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||| | || |||||||||| ||||||||   ||||| | |||||| |||||  ||||||||||||| |||| ||||||||||| ||| ||||||     
T  8592117 caatgtcacgccttctaggtccatcaatattgt---gttta-gcggattgattttgccatccaaaaaggcccagcggcgcagcttgttacccacttgcct 8592022  T
Q  297 tctattcatgtgtaattaat 316  Q
    | ||||||||||||| ||||    
T  8592021 tatattcatgtgtaagtaat 8592002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 52741679 - 52741758
Alignment:
Q  237 acgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||| |||| ||||||  ||||||||||| ||||||||||| ||| ||||||||| ||| |||||||| |||||| ||||    
T  52741679 acgaagatttgttttgccatccaaaaaggtctagcgacgcaacttattgcccgctcgccttctattcaagtgtaaataat 52741758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 21552630 - 21552525
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    |||||||||||||||||   ||||||||||| || ||||||||||  |||||||||| | |  || |||| ||||||||||| || || |||||||| ||    
T  21552630 ctcctaggtccatgaat---gttgtgtttacaagaattggttttgacatccaaaaagacttgacggcgcaacttgttgcccgtttaccttctattcaagt 21552534  T
Q  308 gtaattaat 316  Q
    |||| ||||    
T  21552533 gtaaataat 21552525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 26276577 - 26276497
Alignment:
Q  212 taggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||||||   |||||||||| |||||||| |||||  ||||||||||  ||||||  | |||||||||||||||||||    
T  26276577 taggtccatgaat---gttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgcc 26276497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 37133156 - 37133240
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||  |||||||||||||  ||||||||||| |||||| ||||| |||||| ||  ||| | |||||||| ||||||    
T  37133156 tgttgtgtttataaggattggttttgcgatccaaaaaggtctagcggcgcagtttgttgtcccattgtcttctattcaggtgtaa 37133240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 38146034 - 38145969
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    ||||||||||| ||||||||||||||||    ||||||||||||| ||||| |||||| ||| ||||||    
T  38146034 acaatgtcatgtctcctaggtccatgaa---cgttgtgtttacgatgattgattttgtcatctaaaaag 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 5338596 - 5338552
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagc 271  Q
    ||||||||||||||||||||||||||  |||||||| || |||||    
T  5338596 tgttgtgtttacgaggattggttttgccatccaaaatggtctagc 5338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 50446202 - 50446150
Alignment:
Q  240 aggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgctt 292  Q
    |||||||||||||| |||||||||||  ||||  ||||| |||||||||||||    
T  50446202 aggattggttttgtcatccaaaaaggattagcagcgcaggttgttgcccgctt 50446150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 103084 - 102967
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||| || |||||||||||||||||   |||||||||||||||||||||||||  ||||||||||| |||||| |||| |||||||||||||||||    
T  103084 acaatgtcgtgtctcctaggtccatgaat---gttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttgcc 102988  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  102987 ttctattcaagtgtaaataat 102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 39001363 - 39001263
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    |||||||||||||||||   |||||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||  ||||||||||    
T  39001363 ctcctaggtccatgaat---gttgtgtttacgaggattggttttgtcatccaaaaaggtctagcggcgcagtttgttgcccgcttgcctcctattcatgt 39001267  T
Q  308 gtaa 311  Q
    ||||    
T  39001266 gtaa 39001263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 3329973 - 3329857
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||||||||||||||   | ||||||||||| |||||||||||  ||||||||||| |||||| ||||||||||||||||||||||     
T  3329973 caatgttatgtctcctaggtccatgaat---gctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 3329877  T
Q  297 tctattcatgtgtaattaat 316  Q
     ||||||| |||||| ||||    
T  3329876 cctattcacgtgtaagtaat 3329857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 197 - 328
Target Start/End: Complemental strand, 26521465 - 26521338
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    ||||||||||  ||||||| ||||||    ||||||||||||||||||||||||||| |||||||||||  ||||| | |||||| ||| |||||||||     
T  26521465 caatgtcatgtatcctaggcccatga----tgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccgcttgcct 26521370  T
Q  297 tctattcatgtgtaattaatcattgatctata 328  Q
    ||||| ||||||||| ||||| ||||| ||||    
T  26521369 tctatccatgtgtaagtaatccttgatatata 26521338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 30940861 - 30940978
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||   ||||||||| ||||||   |||||||| | |||||||| |||||  ||||||||||| |||||||||||||||||||||||||||||    
T  30940861 acaatgtcatatatcctaggtctatgaat---gttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccgcttgcc 30940957  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  30940958 ttctattcaagtgtaaataat 30940978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 45661669 - 45661540
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||| |||| ||||||||||||||||||   |||||||||||||||||||  ||||||||||| |||| ||   ||| ||||||| ||||||||    
T  45661669 acaatgtcataactcgtaggtccatgaatattgt---gtttacgaggattggttttactatccaaaaagacctaacggtacagtttgttgcacgcttgcc 45661573  T
Q  296 atctattcatgtgtaattaatcattgatctata 328  Q
     |||| |||| ||||||||||| ||||| ||||    
T  45661572 ttctactcatatgtaattaatcgttgatatata 45661540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 4419241 - 4419133
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| |||||||||||||||||   ||||||||||||| |||||||||||  |||||||||  | ||||| ||||||||||||||||||||||    
T  4419241 acaatgttatgtctcctaggtccatgaat---gttgtgtttacgatgattggttttgccatccaaaaaatc-tagcggcgcagcttgttgcccgcttgcc 4419146  T
Q  296 atctattcatgtg 308  Q
      |||||||||||    
T  4419145 tcctattcatgtg 4419133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 12053415 - 12053333
Alignment:
Q  229 ttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    ||||||||||||| ||||||||||  ||| ||||||||| ||||||||||||||||| | ||||||| |||||||||||||||    
T  12053415 ttgtgtttacgagaattggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttctattcatgtgtaa 12053333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 23605056 - 23604939
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    ||||||| ||||||||||||||  ||||   |||||||| |||||| ||||||||||| |||||| |||| ||||||| ||| ||| | |||||||||||    
T  23605056 ctcctagatccatgaatattgtgttgtt---gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgt 23604960  T
Q  308 gtaattaatcattgatctata 328  Q
    |||| ||||||||||| ||||    
T  23604959 gtaaataatcattgatatata 23604939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 53619564 - 53619447
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| ||| |||||||||||||   |||||||||||||| ||||||||||  ||||||||||| |||||| ||||||||||||||  ||| ||    
T  53619564 acaatgttatgtctcttaggtccatgaat---gttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctacttacc 53619468  T
Q  296 atctattcatgtgtaattaat 316  Q
      |||||||||||||| ||||    
T  53619467 tcctattcatgtgtaagtaat 53619447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 50001083 - 50001172
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||| ||||| |||||  ||||||||||  |||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  50001083 tgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 50001172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 31847069 - 31846964
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    |||||||||||||||||   ||||||||  |||||||| ||| ||  ||||||||||| |||||| ||||| ||||||||||||||||  ||||||||||    
T  31847069 ctcctaggtccatgaat---gttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcctcctattcatgt 31846973  T
Q  308 gtaattaat 316  Q
    |||| ||||    
T  31846972 gtaagtaat 31846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 40392723 - 40392800
Alignment:
Q  239 gaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||  ||||||||||| |||||| |||||||||||| ||||||||| |||||||| |||||| ||||    
T  40392723 gaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttctattcaagtgtaaataat 40392800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 600824 - 600938
Alignment:
Q  199 atgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatc 298  Q
    |||||||| ||||||||||||| |||   | ||||||||||| |||| ||||||  ||||||||| |  |||||||| ||||||||| ||||||||| ||    
T  600824 atgtcatgtctcctaggtccattaat---gctgtgtttacgatgattagttttgccatccaaaaatgtatagcgacgtagcttgttgtccgcttgccttc 600920  T
Q  299 tattcatgtgtaattaat 316  Q
    |||||| |||||| ||||    
T  600921 tattcaagtgtaaataat 600938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 50464453 - 50464528
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctatt 302  Q
    |||||||||||||||||||  |||||  |||||||||| ||||||| |||||||||||| ||||||||| ||||||    
T  50464453 tgttgtgtttacgaggatttattttgccatccaaaaagacctagcggcgcagcttgttgtccgcttgccttctatt 50464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 55933601 - 55933698
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    ||||||||||| |||||   ||||||||||||| ||||| |||||  ||||||||| | |||||||||||| |||||| |||||||||  ||||||||||    
T  55933601 ctcctaggtccgtgaat---gttgtgtttacgatgattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgcttgcctcctattcatgt 55933697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 50442608 - 50442723
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| ||||||||| |||| ||   |||||||||| ||||||||||||||  |||||||||||  ||| | |||||||||||||||||||| |    
T  50442608 acaatgttatgtctcctaggttcatggat---gttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtc 50442704  T
Q  296 atctattcatgtgtaatta 314  Q
     || |||| | ||||||||    
T  50442705 ttccattcctttgtaatta 50442723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 23255691 - 23255585
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| |||||| |||||||||||||||   |||||||||||||| |||||  ||||| ||| | |||||| |||||||||||| |||||| ||    
T  23255691 acaatgttatgtctcctaagtccatgaatattgt---gtttacgaggattgattttgccatccagaaaagtctagcggcgcagcttgttgtccgcttacc 23255595  T
Q  296 atctattcat 305  Q
      ||||||||    
T  23255594 tcctattcat 23255585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 34107825 - 34107942
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| ||||||| |||||||||   |||||||| ||||||||||||||||| ||||||||| |  || || | ||||||||||||| ||||      
T  34107825 acaatgttatgtctcctagatccatgaat---gttgtgttcacgaggattggttttgtcatccaaaaaagtttaacggcacagcttgttgcccacttgtt 34107921  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  34107922 ttctattcaagtgtaaataat 34107942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 50463102 - 50463168
Alignment:
Q  229 ttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||||| ||||||  |||||||||| ||||||| ||||||||| || |||||||||    
T  50463102 ttgtgtttacgaggatttgttttgccatccaaaaagacctagcggcgcagcttgctgtccgcttgcc 50463168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 330
Target Start/End: Complemental strand, 9601184 - 9601059
Alignment:
Q  199 atgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatc 298  Q
    |||||||||||||||||| ||| | |   | ||||||||||||||||| |||||| ||||||||| || || || |||| ||||||| ||||||| | ||    
T  9601184 atgtcatgactcctaggttcataagt---ggtgtgtttacgaggattgattttgtcatccaaaaa-gcttaacggcgcaacttgttgtccgcttgtcttc 9601089  T
Q  299 tattcatgtgtaattaatcattgatctataaa 330  Q
    |||||  ||||| ||||||||| || ||||||    
T  9601088 tattc--gtgtacttaatcattcatatataaa 9601059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 42455736 - 42455865
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||||  | |||||||||||||   |||||| |||||||| ||||  ||||| || ||||||||  ||||  | || |||||||| ||||||||    
T  42455736 acaatgtcatgttttctaggtccatgaa---tgttgtttttacgagaattgactttgtcattcaaaaaggtttagcagcacaacttgttgctcgcttgcc 42455832  T
Q  296 atctattcatgtgtaattaatcattgatctata 328  Q
     ||||||||| ||||||| ||| ||||| ||||    
T  42455833 ttctattcatatgtaatttatctttgatatata 42455865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 2852385 - 2852325
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcc 287  Q
    ||||||||| || |||||||||||| | || ||||||||| ||||| ||||||||||||||    
T  2852385 tgttgtgttcacaaggattggttttttcattcaaaaaggcttagcggcgcagcttgttgcc 2852325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 7536728 - 7536806
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcat 305  Q
    |||| ||||||| | |||||||||||| ||||||||||  |||||   ||| |||||||| |||||| |||||||||||    
T  7536728 tgttatgtttacaatgattggttttgtgatccaaaaagatctagcagtgcaacttgttgctcgcttgtcatctattcat 7536806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 23242878 - 23242813
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    ||||||||||  ||| ||||||||| ||||||||   |||||||| ||||| |||||||||||||||||    
T  23242878 acaatgtcatttctcttaggtccataaatattgt---gtttacgatgattgattttgttatccaaaaag 23242813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 45760950 - 45761051
Alignment:
Q  229 ttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctata 328  Q
    |||| |||| || ||||| |||||| ||||||||| | ||| |||| ||| ||||| ||||||| |  | ||||||||||||||||||| || || ||||    
T  45760950 ttgtatttatgacgattgattttgtcatccaaaaaagtctaacgacacagtttgttacccgcttactttttattcatgtgtaattaatccttaatatata 45761049  T
Q  329 aa 330  Q
    ||    
T  45761050 aa 45761051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 30602430 - 30602336
Alignment:
Q  236 tacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctataaa 330  Q
    |||||||||||||||||  |||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||    
T  30602430 tacgaggattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttctattcatgtgtaattaatccttgatatataaa 30602336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 17344616 - 17344499
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||   ||||||||||| ||| || |||||||||||||| |||||||    
T  17344616 acaatgtcatgtctcctaggtccatgaat---gttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgccggcttgcc 17344520  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  17344519 ttctattcaagtgtaaataat 17344499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 13413329 - 13413212
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||||||||||||||||   |||||||||| ||| ||||||||||  ||||||||||||||| || | |||||||||| ||||||| |    
T  13413329 acaatgtcatgtctcctaggtccatgaat---gttgtgtttatgagaattggttttgccatccaaaaaggcctaacggctcagcttgttgtccgcttgtc 13413233  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  13413232 ttctattcaagtgtaaataat 13413212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 201 - 316
Target Start/End: Original strand, 4413200 - 4413312
Alignment:
Q  201 gtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatcta 300  Q
    |||||| |||||||||||||||||   |||||||| | |||||||| |||||  ||||||||||| |||||| ||||||||||||||| |||||| ||||    
T  4413200 gtcatgtctcctaggtccatgaat---gttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccacttgccttcta 4413296  T
Q  301 ttcatgtgtaattaat 316  Q
    |||| |||||| ||||    
T  4413297 ttcaagtgtaaataat 4413312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 3208406 - 3208490
Alignment:
Q  232 tgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||||||||||  |||||||||||  ||||| |||||||||||||||||||||| |||||||| |||||| ||||    
T  3208406 tgtttacgaggattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttctattcaagtgtaaataat 3208490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 240 - 323
Target Start/End: Complemental strand, 41702209 - 41702126
Alignment:
Q  240 aggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  41702209 aggattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttctattcatgtgtaagtaatccttgat 41702126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 41868037 - 41868153
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||| ||||||||||||   |||||||||||||||||||||||||  | ||||||||  |||||| |||| ||||||||||||||||     
T  41868037 acaatgtcatgtctcccaggtccatgaat---gttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaacttgttgcccgcttgct 41868132  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  41868133 ttctattcaagtgtaaataat 41868153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 9685545 - 9685649
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   |||||||| || | ||||| |||||  ||||||||||| |||||| ||||||||||||||||||||||     
T  9685545 caatgtcatgtctcctaggtccatgaat---gttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 9685641  T
Q  297 tctattca 304  Q
    | ||||||    
T  9685642 tatattca 9685649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 18745111 - 18745200
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||  |||||||||||||  ||||||||||| |||||| |||||||| |||| |||||| | |||||||| |||||| ||||    
T  18745111 tgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagcttattgctcgcttgtcttctattcaagtgtaaataat 18745200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 27494288 - 27494172
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||| ||| |||||||||||   ||||||||  ||||||||||  ||||||||||| ||| || |||||||||||||| |||||||     
T  27494288 caatgttatgtctcctaagtctatgaatattgt---gtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgttgcctgcttgcct 27494192  T
Q  297 tctattcatgtgtaattaat 316  Q
     |||||||| ||||| ||||    
T  27494191 cctattcatatgtaagtaat 27494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 2626004 - 2626100
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgat 323  Q
    |||||||||||||| ||||  |||   |||| | ||||| ||| || |||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  2626004 tgttgtgtttacgaagattaatttaactatctacaaaggtctaacggcgcagcttgttgtccgcttgccttctattcatgtgtaattaattattgat 2626100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 28224966 - 28224861
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    |||||||||| ||||||   |||||||||| || |||| ||||||  ||||||||||| |||||| |||||||| ||||||||||| |  |||||||| |    
T  28224966 ctcctaggtcaatgaat---gttgtgtttatgaagatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgcttgtctcctattcattt 28224870  T
Q  308 gtaattaat 316  Q
    |||| ||||    
T  28224869 gtaagtaat 28224861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 226 - 316
Target Start/End: Complemental strand, 42122768 - 42122678
Alignment:
Q  226 ttgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||| ||||||||||||| ||||||||  ||||||||| | |||||| |||||||| |||  |||||||| |||||||| |||||| ||||    
T  42122768 ttgtcgtgtttacgaggactggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttctattcaagtgtaaataat 42122678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 10587144 - 10587213
Alignment:
Q  259 aaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctata 328  Q
    ||||||| |||||| || ||||||||||||| ||||| ||||||||||||||| ||||| ||||| ||||    
T  10587144 aaaaaggtctagcggcgtagcttgttgcccgtttgccttctattcatgtgtaagtaatccttgatatata 10587213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 15515304 - 15515393
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||| ||||||||||||||||  ||||||||| | |||||| ||||| |||||||| | ||||| |||| ||| |||||| ||||    
T  15515304 tgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcctgtttgccttctactcaagtgtaaataat 15515393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 32612326 - 32612394
Alignment:
Q  234 tttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctatt 302  Q
    |||||||||||||||||||  |||  |||||| |  ||||||||| |||||||||||||||| ||||||    
T  32612326 tttacgaggattggttttgccatctgaaaaggtccggcgacgcagtttgttgcccgcttgccttctatt 32612394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 292
Target Start/End: Original strand, 11921348 - 11921426
Alignment:
Q  211 ctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgctt 292  Q
    ||||||||||||||   ||||||||||| |||||| |||| |  ||||||||||  |||||| ||||||||||| |||||||    
T  11921348 ctaggtccatgaat---gttgtgtttactaggattagtttcgccatccaaaaagatctagcgtcgcagcttgttacccgctt 11921426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 35310425 - 35310309
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||||||||||||||   |||||||||||||| ||||||||||  ||||||| |||  || |||||||||||||||||||||||||     
T  35310425 caatgttatgtctcctaggtccatgaat---gttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgcttgcct 35310329  T
Q  297 tctattcatgtgtaattaat 316  Q
     |||||||||||||| ||||    
T  35310328 cctattcatgtgtaagtaat 35310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 13167051 - 13167156
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    |||||||||||||||||   |||| |||||||| ||||| || ||||||||||||||  |||||| ||||||||||||||| ||||||  ||||||||||    
T  13167051 ctcctaggtccatgaat---gttgggtttacgatgattgattctgttatccaaaaagatctagcggcgcagcttgttgcccacttgcctcctattcatgt 13167147  T
Q  308 gtaattaat 316  Q
    |||||||||    
T  13167148 gtaattaat 13167156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 37873767 - 37873897
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttg-c 294  Q
    |||||||||||||| ||||||| ||||||   |||||||||| |||||||| ||||| |||| ||||||||||||||  ||| |||||| |||| ||| |    
T  37873767 acaatgtcatgacttctaggtctatgaat---gttgtgtttaagaggattgattttgctatcaaaaaaggcctagcggtgcaacttgttacccgtttgtc 37873863  T
Q  295 catctattcatgtgtaattaatcattgatctata 328  Q
      |||||||||||||| |||||||||||| ||||    
T  37873864 tttctattcatgtgtatttaatcattgatatata 37873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 32269927 - 32270042
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||||||||||||||   |||||||||||||||||||| ||| |  ||||||||| || |||||  |||||||||| ||||||||||     
T  32269927 caatgtcatgtctcctaggtccatgaa---tgttgtgtttacgaggattgatttcgccatccaaaaaagcatagcg-ggcagcttgttacccgcttgcct 32270022  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  32270023 tctattcaagtgtaaataat 32270042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 42921675 - 42921559
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||||| |||||| ||||||||   |||||| |||||||||||||  ||||||||||  |||||| ||||||||||| ||| ||||||    
T  42921675 acaatgtcatgtctcctaagtccat-aatattgt---gtttacaaggattggttttgccatccaaaaagatctagcggcgcagcttgtttcccacttgcc 42921580  T
Q  296 atctattcatgtgtaattaat 316  Q
     |||||||| |||||| ||||    
T  42921579 ttctattcaagtgtaaataat 42921559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 11005825 - 11005760
Alignment:
Q  230 tgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||| |||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  11005825 tgtgtttactaggattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgcc 11005760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 25663162 - 25663278
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| | |||||||||||||||   |||| ||||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| || |||||     
T  25663162 caatgttatgtcccctaggtccatgaat---gttgagtttacgaggattggctttgtcatccaaaaaggtctaacgacgcagcttgttgctcgtttgcct 25663258  T
Q  297 tctattcatgtgtaattaat 316  Q
     || || |||||||| ||||    
T  25663259 cctttttatgtgtaagtaat 25663278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 2566225 - 2566320
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||| ||||||| ||||| |||   ||||||||||||||||||| |||||  ||||||||||| |||||| |||| |||||||||| ||||||    
T  2566225 caatgtcatgtctcctagatccatcaat---gttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgcccacttgcc 2566320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 23023572 - 23023461
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||| ||||||   ||||||||||||| ||||| |||||| |||||||||||||||| | |||| ||| ||| ||| |||||     
T  23023572 caatgtcatgtctcctaggtcgatgaat---gttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgcatcttattgtccgtttgcct 23023476  T
Q  297 tctattcatgtgtaa 311  Q
    | |||| ||||||||    
T  23023475 tttatttatgtgtaa 23023461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 15292166 - 15292259
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattca 304  Q
    |||||||||||||||||   |||||||||| |||||||| |||||  ||||||||| || | ||| ||||| ||||||||| |||||| ||||||||    
T  15292166 ctcctaggtccatgaat---gttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcgcagtttgttgcccacttgccttctattca 15292259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 43350038 - 43349917
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||| || ||| ||||||   ||||||||||| | ||||| ||||| |||| ||||| ||||| ||| |||| |||||| ||||| ||     
T  43350038 acaatgtcatgactcttaagtcaatgaat---gttgtgtttacaatgattgattttgctatctaaaaaagcctaacgatgcagattgttgtccgctcgca 43349942  T
Q  296 atctattcatgtgtaattaatcatt 320  Q
     | |||||||||||||| |||||||    
T  43349941 ttatattcatgtgtaatcaatcatt 43349917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 430578 - 430471
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccat 297  Q
    ||||| ||| |||||||||||||||||   ||||||||||||||||||| || ||  ||||||||||| ||| ||  ||||||||| | | |||||||      
T  430578 aatgttatgtctcctaggtccatgaat---gttgtgtttacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgtngtctgcttgcctc 430482  T
Q  298 ctattcatgtg 308  Q
    |||||||||||    
T  430481 ctattcatgtg 430471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 2917524 - 2917601
Alignment:
Q  234 tttacgaggattggtttt-gttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgta 310  Q
    |||||||||||||||||| |  ||||||||||| |||||| ||||| |||||||| |||||||  |||||||||||||    
T  2917524 tttacgaggattggtttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcctcctattcatgtgta 2917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 23092763 - 23092694
Alignment:
Q  233 gtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctatt 302  Q
    |||||||||||||| |||||| |||||| |||| ||||| |||||| |||||| | ||||||| ||||||    
T  23092763 gtttacgaggattgattttgtcatccaacaaggtctagcaacgcagtttgttgtctgcttgccttctatt 23092694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 33692237 - 33692298
Alignment:
Q  255 atccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||  |||||| |||||||||||||| |||||||  |||||||||||||| ||||    
T  33692237 atccaaaaagatctagcggcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaat 33692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 27913541 - 27913491
Alignment:
Q  266 cctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||||| ||||    
T  27913541 cctagcggcgcagcttgttgcccgcttgccttctatccttgtgtaaataat 27913491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 22188784 - 22188848
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaa 263  Q
    ||||| ||||| ||||||| | |||||||   |||||||||||||| ||||||||||| |||||||||    
T  22188784 acaatatcatgtctcctagattcatgaat---gttgtgtttacgagaattggttttgtcatccaaaaa 22188848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 27336672 - 27336556
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||| |||||||||| |||||   ||||| ||||||| |||||  ||| ||||||| ||||||  |||| || ||| ||||||| |     
T  27336672 caatgttatgtctcctaagtccatgaatgttgtt---tttacaaggattgattttgccatcaaaaaaggtctagcggtgcagtttattgtccgcttgtct 27336576  T
Q  297 tctattcatgtgtaattaat 316  Q
     |||||||||||||| ||||    
T  27336575 cctattcatgtgtaagtaat 27336556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 15506772 - 15506840
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    |||||||||||||||||||| ||||   ||| ||||||||||| || |||| |||||||| || |||||    
T  15506772 tgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcgcaacttgttgctcgtttgcc 15506840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 228 - 311
Target Start/End: Complemental strand, 6837 - 6754
Alignment:
Q  228 gttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    |||||||||||||| ||||||||||  ||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||    
T  6837 gttgtgtttacgagaattggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttctattcaagtgtaa 6754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 28517416 - 28517533
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||| ||| |||||| ||||||||||   |||||||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||  ||||    
T  28517416 acaatgttatgtctcctaagtccatgaat---gttgtgtttacgaggattggttttgccatccaaaaaagtctagcgacacagcttgttgcccgtctgcc 28517512  T
Q  296 atctattcatgtgtaattaat 316  Q
      |||||||||||||| ||||    
T  28517513 tcctattcatgtgtaagtaat 28517533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 45613983 - 45614076
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattca 304  Q
    |||||||||||||||||   |||||||||||||||||||||||||  |||| |||||| |||||| |||||||||||| ||||||||| ||||||||    
T  45613983 ctcctaggtccatgaat---gttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccgcttgccttctattca 45614076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 21326968 - 21327084
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||| ||| |||||||||||||||||   |||||||| |||||||||| |||||  ||||||||||| ||| || |||||||||||| | |||||||     
T  21326968 caatgttatgtctcctaggtccatgaat---gttgtgttcacgaggattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctgcttgcct 21327064  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  21327065 tctattcaagtgtaaataat 21327084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 27027760 - 27027864
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| |||||||||||||||||   |||||||| |||||||||||||||| |||||||||||  ||||||  | |||||||| ||| ||||||     
T  27027760 caatgtcatgtctcctaggtccatgaat---gttgtgttcacgaggattggttttgctatccaaaaagatctagcggtgtagcttgttacccacttgcct 27027856  T
Q  297 tctattca 304  Q
    ||||||||    
T  27027857 tctattca 27027864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 982926 - 982822
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| || ||| ||||||||||   |||||||| |||||||||||| |||  ||||||||||| |||||||| |||||||||||| | |||||     
T  982926 caatgtcatgtcttctatgtccatgaat---gttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctgtttgcct 982830  T
Q  297 tctattca 304  Q
    ||||||||    
T  982829 tctattca 982822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 45003054 - 45003143
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    |||||||||||||| ||||| |||||  ||||||||||| |||||| |||||||| ||| |||||||||  |||||||||||||| ||||    
T  45003054 tgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaat 45003143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 2520917 - 2520981
Alignment:
Q  266 cctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaatcattgatctataaa 330  Q
    ||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||    
T  2520917 cctagcggcgcagcttgttgtccgcttgccttctattcatgtgtaattaatctttgatatataaa 2520981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 2904353 - 2904235
Alignment:
Q  201 gtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatcta 300  Q
    ||||||||||||||||| ||||||   |||||||||||||  |||||||||| ||||||||||||  ||| | || ||||||||| | |  || | ||||    
T  2904353 gtcatgactcctaggtctatgaat---gttgtgtttacgataattggttttgctatccaaaaagg-ttagtggcgtagcttgttgtctgtatgtcttcta 2904258  T
Q  301 ttcatgtgtaattaatcattgat 323  Q
    |||||||||||||||||||||||    
T  2904257 ttcatgtgtaattaatcattgat 2904235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 45974731 - 45974845
Alignment:
Q  199 atgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatc 298  Q
    |||||||| ||||||||| |||||||   ||||||||||| |||||   |||||| ||||||||||| |||| | |||||||||||| ||||||| | ||    
T  45974731 atgtcatgtctcctaggttcatgaat---gttgtgtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttc 45974827  T
Q  299 tattcatgtgtaattaat 316  Q
    |||||| |||||| ||||    
T  45974828 tattcaagtgtaaataat 45974845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 38766258 - 38766185
Alignment:
Q  243 attggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||  ||||||||||| |||||  ||||||||||||||||||||||  |||||||||||||| ||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaat 38766185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 311
Target Start/End: Original strand, 40726621 - 40726721
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    ||||||| |||||||||   |||||||||| |||||||| |||||  ||||||||| | ||| |  ||||||||||||||||||||||  ||||||||||    
T  40726621 ctcctagatccatgaat---gttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgcccgcttgcctcctattcatgt 40726717  T
Q  308 gtaa 311  Q
    ||||    
T  40726718 gtaa 40726721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 48539158 - 48539094
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    |||||||||| |||||||||||||||||   |||||||||||||||||||||||||  ||||||||||    
T  48539158 caatgtcatgtctcctaggtccatgaat---gttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 5825223 - 5825139
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaa 311  Q
    ||||||||||||||||||||||||||  ||| ||||||| ||  || ||||||||||| || |||||||  ||||||||||||||    
T  5825223 tgttgtgtttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgttacctgcttgcctcctattcatgtgtaa 5825139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 19277270 - 19277164
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttac--gaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgc 294  Q
    |||||||||| |||||||||||||||||   |||||||| ||  ||  ||||||||||  ||||||||||| |||||| |||||||| |||||||| |||    
T  19277270 caatgtcatgtctcctaggtccatgaat---gttgtgttcacacgaaaattggttttgccatccaaaaaggtctagcggcgcagcttattgcccgcctgc 19277174  T
Q  295 catctattca 304  Q
    | ||||||||    
T  19277173 cttctattca 19277164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 329
Target Start/End: Original strand, 9281265 - 9281395
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||| || |||||| |||   |||||||||| ||| ||||||||||  |||||||||||| || ||  |||| |||||| | |||| ||    
T  9281265 acaatgtcatgactcttaagtccattaat---gttgtgtttaggagaattggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttacc 9281361  T
Q  296 atctattcatgtgtaattaatcattgatctataa 329  Q
     | ||||||| ||||||||||| ||||| |||||    
T  9281362 ttatattcatatgtaattaatctttgatatataa 9281395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 329
Target Start/End: Original strand, 9292236 - 9292366
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||||||| || |||||| |||   |||||||||| ||| ||||||||||  |||||||||||| || ||  |||| |||||| | |||| ||    
T  9292236 acaatgtcatgactcttaagtccattaat---gttgtgtttaggagaattggttttgcaatccaaaaaggcttaacggtgcagtttgttgtctgcttacc 9292332  T
Q  296 atctattcatgtgtaattaatcattgatctataa 329  Q
     | ||||||| ||||||||||| ||||| |||||    
T  9292333 ttatattcatatgtaattaatctttgatatataa 9292366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 10905096 - 10904967
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcc 295  Q
    ||||||||||| |||||||||||||||||   || |||||||| ||||||| | |    |||||||||| |||||   ||||||||||| ||| |||||     
T  10905096 acaatgtcatgtctcctaggtccatgaat---gtcgtgtttacaaggattgatctgaccatccaaaaagacctagtagcgcagcttgttaccctcttgca 10905000  T
Q  296 atctattcatgtgtaattaatcattgatctata 328  Q
     ||||||||||||||| |||| |||||| ||||    
T  10904999 ttctattcatgtgtaaataattattgatatata 10904967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 4501236 - 4501120
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||||| | |||||||   |||||||||||||||||| | ||||| ||| ||||||| |||||  |||| ||| ||| |||||||||     
T  4501236 caatgtcatgtctcctagattcatgaat---gttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcgcatcttattgtccgcttgcct 4501140  T
Q  297 tctattcatgtgtaattaat 316  Q
    | |||||| |||||| ||||    
T  4501139 tatattcaagtgtaaataat 4501120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 22197960 - 22197860
Alignment:
Q  201 gtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatcta 300  Q
    |||||| |||||||||| ||||||   |||||||||||||  |||| |||||| |||||||||||| | |||  ||| ||||||||||||||| | ||||    
T  22197960 gtcatgtctcctaggtcaatgaat---gttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccgcttgtcttcta 22197864  T
Q  301 ttca 304  Q
    ||||    
T  22197863 ttca 22197860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 22239861 - 22239961
Alignment:
Q  201 gtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatcta 300  Q
    |||||| |||||||||| ||||||   |||||||||||||  |||| |||||| |||||||||||| | |||  ||| ||||||||||||||| | ||||    
T  22239861 gtcatgtctcctaggtcaatgaat---gttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccgcttgtcttcta 22239957  T
Q  301 ttca 304  Q
    ||||    
T  22239958 ttca 22239961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 24527566 - 24527482
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgtt 284  Q
    |||||||||  ||||| |||||||||||   ||||| || ||||||||||||||||| ||||||||||  |||||| |||||||||||    
T  24527566 caatgtcatttctccttggtccatgaat---gttgtattcacgaggattggttttgtcatccaaaaagatctagcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 25187061 - 25187177
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||||| |||||||||   ||||||||  | | ||||| ||||   ||| ||||||  |||||| ||||||||||||||||||||||     
T  25187061 caatgtcatgtctcctagatccatgaat---gttgtgttcccaatgattgattttaccatctaaaaagatctagcggcgcagcttgttgcccgcttgcct 25187157  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  25187158 tctattcaagtgtaaataat 25187177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 38832224 - 38832163
Alignment:
Q  255 atccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||| |||||| ||||||||||||||||||||||  |||||||| ||||| ||||    
T  38832224 atccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatatgtaagtaat 38832163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 263
Target Start/End: Complemental strand, 43856852 - 43856788
Alignment:
Q  196 acaatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaa 263  Q
    ||||||||||||||||||||||||||||   |||| |||||||||| |||| ||||| ||||||||||    
T  43856852 acaatgtcatgactcctaggtccatgaa---tgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 42295317 - 42295378
Alignment:
Q  200 tgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    ||||||| ||||||||||||||||| ||||   |||||||| |||| ||||||||||||||||||    
T  42295317 tgtcatgtctcctaggtccatgaatcttgt---gtttacgatgattagttttgttatccaaaaag 42295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 5972373 - 5972462
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||||||||||||| ||||||  |||||||||| |||| ||| ||| ||| || ||||  |||| |||||||| |||||| ||||    
T  5972373 tgttgtgtttacgaggattagttttgccatccaaaaagacctaacgatgcaacttatttcccgtatgccttctattcaagtgtaaataat 5972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 41117900 - 41117988
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgca-gcttgttgcc 287  Q
    ||||||||||  |||||||||||||||   ||||||||| |||| ||||| ||||| |||||||||| | | |||| |||| ||||||||||    
T  41117900 caatgtcatgtttcctaggtccatgaa---tgttgtgttcacgatgattgattttgctatccaaaaaagtccagcggcgcaggcttgttgcc 41117988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 33216 - 33111
Alignment:
Q  208 ctcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgt 307  Q
    ||||||||||||||||    || |||||||||||||||| |||||| |||||||||||| | |||  ||||||||||||| ||||||| |||||||| ||    
T  33216 ctcctaggtccatgaac---gtcgtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcctgcttgccttctattcaagt 33120  T
Q  308 gtaattaat 316  Q
    |||| ||||    
T  33119 gtaaataat 33111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 5274 - 5185
Alignment:
Q  227 tgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgccatctattcatgtgtaattaat 316  Q
    ||||||||| ||||||||||  ||||  ||||||||||| |||||| |||||||||||||||||||||  |||||||| |||||| ||||    
T  5274 tgttgtgttcacgaggattgactttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattctattcaagtgtaaataat 5185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 316
Target Start/End: Original strand, 314 - 430
Alignment:
Q  197 caatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaaggcctagcgacgcagcttgttgcccgcttgcca 296  Q
    |||||||||| ||||||| || |||||    |||||||||||||||||| ||||||  |||||||||||| | | | |||| ||||||||| |||| ||     
T  314 caatgtcatgtctcctagatcgatgaac---gttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatcttgttgccggctttcct 410  T
Q  297 tctattcatgtgtaattaat 316  Q
    |||||||| |||||| ||||    
T  411 tctattcaagtgtaaataat 430  T

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Target: scaffold0470 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 7579 - 7516
Alignment:
Q  198 aatgtcatgactcctaggtccatgaatattgttgtgtttacgaggattggttttgttatccaaaaag 264  Q
    ||||||||| ||| |||||||||||||   ||| |||||||||| ||||||||||| ||||||||||    
T  7579 aatgtcatgtctcataggtccatgaat---gttatgtttacgagtattggttttgtcatccaaaaag 7516  T

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