View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_13 (Length: 550)
Name: NF14366_low_13
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Complemental strand, 51739875 - 51739360
Alignment:
| Q |
17 |
aagaatgagacaacttaaaccctttgaagcttgtgctgcattatacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaaccc |
116 |
Q |
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| T |
51739875 |
aagaatgagacaacttaaaccctttgaagcttgtgccgcattatacttcttatcatccatcttcgtattaaccatcatattaaacaccaataagcaaccc |
51739776 |
T |
|
| Q |
117 |
atttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgt |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739775 |
atttctacaatcaatgcggcggacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgt |
51739676 |
T |
|
| Q |
217 |
atgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739675 |
atgatacaactaacataataatcatacagaaataaaaccttgaaccatcgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattac |
51739576 |
T |
|
| Q |
317 |
acccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaattt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739575 |
acccattaccacaccaccacatgctaccaagctcactaaacgtagattacgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaattt |
51739476 |
T |
|
| Q |
417 |
attcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaatacca |
516 |
Q |
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| T |
51739475 |
attcgacaaaagaagctcacaacttcgtagtaattcatggaattggcaggaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaatacca |
51739376 |
T |
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| Q |
517 |
accctgcctgtaattc |
532 |
Q |
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|||||||||||||||| |
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| T |
51739375 |
accctgcctgtaattc |
51739360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 366 - 527
Target Start/End: Complemental strand, 10200216 - 10200055
Alignment:
| Q |
366 |
cgcaatgcgtattgaatattcatctctaagccaaataaaaacatgaaatttattcgacaaaagaagctcacaacttcgtagtaattcatggaattggcag |
465 |
Q |
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||||||| ||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||| |||| | |
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| T |
10200216 |
cgcaatgtgtagtgaatattcatttccaagccaaataaaaacatgaaatttatgcgacaaaagaagctcactacttgatagtaatttatggaactggctg |
10200117 |
T |
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| Q |
466 |
gaaagaatgtttcttttatgcatcgaatatgtgacattgggcctaataccaaccctgcctgt |
527 |
Q |
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| T |
10200116 |
gaaagaatgtctcttttatatatggaatatgagacattggacctaatatcaacccagcctgt |
10200055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 235
Target Start/End: Complemental strand, 10200481 - 10200350
Alignment:
| Q |
104 |
caataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagatgcggcaaaccttaaatctgctgccaaacggatgaccata |
203 |
Q |
| |
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|||||||||| |||||||| |||||| || | |||||| |||||||| |||| ||| ||||| ||||| | ||| || || | |||||| || ||||| |
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| T |
10200481 |
caataagcaagccatttctgtaatcaacgctgaagacaccgcgattcgcccgatatcggatgcagcaaatcgtaactccgccgtcaaacgaatcaccatg |
10200382 |
T |
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| Q |
204 |
ggggaacttgtgtatgatacaactaacataat |
235 |
Q |
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||||| |||||||||||||| | || |||||| |
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| T |
10200381 |
ggggagcttgtgtatgataccattagcataat |
10200350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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