View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_15 (Length: 507)
Name: NF14366_low_15
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 35 - 491
Target Start/End: Original strand, 44839978 - 44840434
Alignment:
| Q |
35 |
tcttctgttcaaattcaaactcctctggtacaatttcatcccttacatgcattgatttccggttgcagacaccctccggaggaggacgaatgataggatt |
134 |
Q |
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| T |
44839978 |
tcttctgttcaaattcaaactcctctggtacaatttcatcccttacatgcattgatttccggttgcagacaccctccggaggaggacgaatgataggatt |
44840077 |
T |
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| Q |
135 |
agaagtcccattgtatccatatccacctgtacctggatggggccttccatagcctctaccagcaggtctcatataaccagtatttggtgtccgtcgaagg |
234 |
Q |
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| T |
44840078 |
agaagtcccattgtatccatatccacctgtacctggatggggccttccatagcctctaccagcaggtctcatataaccagtatttggtgtccgtcgaagg |
44840177 |
T |
|
| Q |
235 |
tttccagcagctcttccagctccactgtaatcgcgcatgcctggcattggagccatatctgtatnnnnnnnacatgctctaggattagaacttcgggctg |
334 |
Q |
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| T |
44840178 |
tttccagcagctcttccagctccactgtaatcgcgcatgcctggcattggagccatatctgtatcccccccacatgctctaggattagaacttcgggctg |
44840277 |
T |
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| Q |
335 |
aacaacccaactgtttggcagcaatgcttccacctcgattcttcgatttctttgaataagtcacccataggccatcatcctgtcctgagcctaggttaac |
434 |
Q |
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| T |
44840278 |
aacaacccaactgtttggcagcaatgcttccacctcgattcttcgatttctttgaataagtctcccataggccatcatcctgtcctgagcctaggttaac |
44840377 |
T |
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| Q |
435 |
atcagcaataccttgaatcagctgctcattattggggtaaaattgagatacacattt |
491 |
Q |
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| T |
44840378 |
atcagcaataccttgaatcagctgctcattattggggtaaaattgagatacacattt |
44840434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 48 - 487
Target Start/End: Original strand, 44851751 - 44852190
Alignment:
| Q |
48 |
ttcaaactcctctggtacaatttcatcccttacatgcattgatttccggttgcagacaccctccggaggaggacgaatgataggattagaagtcccattg |
147 |
Q |
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| T |
44851751 |
ttcaaactcctctggtacaatttcattccttgcatgagttgatttccagttccagccaccctgtagaggaggaggaatgatgggattagaagtcacattg |
44851850 |
T |
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| Q |
148 |
tatccatatccacctgtacctggatggggccttccatagcctctaccagcaggtctcatataaccagtatttggtgtccgtcgaaggtttccagcagctc |
247 |
Q |
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| T |
44851851 |
tatccatatccaccagtggctggctggggccttccattgcctctaccagcgggtctcatataaccagcatttggtgtctgccaggggtttccagcagctc |
44851950 |
T |
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| Q |
248 |
ttccagctccactgtaatcgcgcatgcctggcattggagccatatctgtatnnnnnnnacatgctctaggattagaacttcgggctgaacaacccaactg |
347 |
Q |
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| T |
44851951 |
ttccagctccactgttattccacacgccctgcttttgagccacatctgcattcccc---cacgctctaggattagaaccatgagctggaggaccccgctg |
44852047 |
T |
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| Q |
348 |
tttggcagcaatgctt---ccacctcgattcttcgatttctttgaataagtcacccataggccatcatcctgtcctgagcctaggttaacatcagcaata |
444 |
Q |
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|||||||||| |||| ||||||| || ||||||||||||||||||||| ||||| | |||||||||||||| ||||||| |||||||||||||||| |
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| T |
44852048 |
tttggcagcaccgcttccaccacctctgtttttcgatttctttgaataagtctcccatggcccatcatcctgtccagagcctaagttaacatcagcaata |
44852147 |
T |
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| Q |
445 |
ccttgaatcagctgctcattattggggtaaaattgagatacac |
487 |
Q |
| |
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|||||| |||||||||| | ||||| | |||||||||||||| |
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| T |
44852148 |
ccttgagccagctgctcagttttgggatcaaattgagatacac |
44852190 |
T |
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