View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_16 (Length: 506)
Name: NF14366_low_16
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 493
Target Start/End: Complemental strand, 28902578 - 28902094
Alignment:
| Q |
7 |
gagatgaacgtttgttttgtgaaaaaattatgaaattaacttgataaaacatagcttgtgttttacaaatgttcattcatttttatcaagcaatgcttga |
106 |
Q |
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| T |
28902578 |
gagatgaacgtttgttttgtgaaaaaattatgaaattaacttgataaaacatagcttgtgttttacaaatgttcattcatttttaccaagcaatgcttga |
28902479 |
T |
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| Q |
107 |
caacattcatttcctttttcttcaagaaacaaacactcatcaaacacaagtaagataaccaacgaaaaagaaatgttttaaagataaccatctagacnnn |
206 |
Q |
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| T |
28902478 |
caacattcatttcctttttcttcaagaaacaaacactcattaaacacaagtaagataaccaactaaaaagaaatgttttaaagataaccatctagac--- |
28902382 |
T |
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| Q |
207 |
nnnnnnntgttaaaattatgttttacagatgagc-annnnnnnatttcgttatcttagtcgtgtttgatgagcgtttgttttatgaagaaaaagaaaatg |
305 |
Q |
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| T |
28902381 |
aaaaaaatgttaaaattatgttttacatatgagcgttttttttatttcgttatcttagttgtgtttgatgagcgtttgttttatgaagaaaaagaaaatg |
28902282 |
T |
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| Q |
306 |
aaggttgtaaagcatagatttgtaaagaaaattatgacattaaccgnnnnnnnnntaagatattgtaaaacatagaatgtaaaaatagcttgggtctcat |
405 |
Q |
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| T |
28902281 |
aaggttgtaaagcatagatttgtaaagaaaattatgaaattaacgggaaaaaaaacaagatattgtaaaacatagaatgtaaaaatagcttgggtctcat |
28902182 |
T |
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| Q |
406 |
tctaaaatgctagtagctcataaaatgagcatacacaaacacatattggaagaaatcgacaatacaagaaaatacaacgatttaaata |
493 |
Q |
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| T |
28902181 |
tctaaaaagctagtagctcataaaatgagcatacccaaacacatattgtaagaaaccgacaatacaagaaactactacgatttcaata |
28902094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 28902267 - 28902333
Alignment:
| Q |
99 |
atgcttgacaacattcatttcctttttcttcaagaaacaaacactcatcaaacacaagtaagataac |
165 |
Q |
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| T |
28902267 |
atgctttacaaccttcattttctttttcttcataaaacaaacgctcatcaaacacaactaagataac |
28902333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 28902420 - 28902486
Alignment:
| Q |
254 |
gttatcttagtcgtgtttgatgagcgtttgttttatgaagaaaaagaaaatgaaggttgtaaagcat |
320 |
Q |
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| T |
28902420 |
gttatcttacttgtgtttaatgagtgtttgtttcttgaagaaaaaggaaatgaatgttgtcaagcat |
28902486 |
T |
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