View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_17 (Length: 491)
Name: NF14366_low_17
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 6 - 476
Target Start/End: Complemental strand, 13881822 - 13881363
Alignment:
| Q |
6 |
ctaaattatactcttatataaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
105 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13881822 |
ctaaattatacccttatataaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggt |
13881723 |
T |
|
| Q |
106 |
accattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcat |
205 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
13881722 |
accattcattctttctgacacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcat |
13881623 |
T |
|
| Q |
206 |
atgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaatatgcttg |
305 |
Q |
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| T |
13881622 |
atgaaaa-tcaataaaacttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattga--------- |
13881533 |
T |
|
| Q |
306 |
aatatgcaagnnnnnnnnnnnnnnnnncatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacat |
405 |
Q |
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| T |
13881532 |
-atatgcaagttttcttttccttttttcatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacat |
13881434 |
T |
|
| Q |
406 |
ggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaacttgtgttactgaacaaacatgtt |
476 |
Q |
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| T |
13881433 |
ggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaacttgtgttactgaacaaacatgtt |
13881363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 46 - 301
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
| Q |
46 |
taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta |
144 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||| | ||||||||||||||||| ||| | |||||| ||| |
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| T |
16022693 |
taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta |
16022594 |
T |
|
| Q |
145 |
tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag |
244 |
Q |
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||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || ||||||||||||||||| |
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| T |
16022593 |
tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag |
16022494 |
T |
|
| Q |
245 |
tttaccacataaatgcttgtg---ttctacacgattagaacatatatcgtattgaatatg |
301 |
Q |
| |
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|||| ||| ||||||| ||| |||| || ||| |||||||||||||||||||||||| |
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| T |
16022493 |
tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg |
16022434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 100 - 302
Target Start/End: Original strand, 14389488 - 14389688
Alignment:
| Q |
100 |
attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat |
199 |
Q |
| |
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|||||||||||| ||| ||||||||||| || | |||||| |||| ||||||| | || || || || || ||||||||||||||||| |||||||| |
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| T |
14389488 |
attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat |
14389585 |
T |
|
| Q |
200 |
atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtgttctacacgattagaacatatatcgtattgaata |
299 |
Q |
| |
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|||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| ||| |||| || ||||||| || ||| |||||||||| |||||||||| |
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| T |
14389586 |
atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaata |
14389685 |
T |
|
| Q |
300 |
tgc |
302 |
Q |
| |
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||| |
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|
| T |
14389686 |
tgc |
14389688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 16022378 - 16022307
Alignment:
| Q |
383 |
tagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaact |
454 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | ||||| || ||||||||||| |||||||||||||| |
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| T |
16022378 |
tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaact |
16022307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 452
Target Start/End: Original strand, 14389758 - 14389836
Alignment:
| Q |
374 |
agttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaa |
452 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | ||||| || ||||||||||| || ||||||||| |
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| T |
14389758 |
agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaa |
14389836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 13856788 - 13856744
Alignment:
| Q |
371 |
tggagttttaagtagtgttatatgttttgtaacatggtttatttc |
415 |
Q |
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|||| ||||||| |||||||||||||| ||||||||||||||||| |
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| T |
13856788 |
tggaattttaaggagtgttatatgtttggtaacatggtttatttc |
13856744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
| Q |
168 |
tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta |
248 |
Q |
| |
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||||||||||| ||||||||||| ||||||| ||||||| | ||||||| |||||||| |||| |||| ||||||||||| |
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| T |
48707228 |
tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta |
48707308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 26200174 - 26200118
Alignment:
| Q |
166 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaa |
222 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||||||||| |||||| |||| |
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|
| T |
26200174 |
actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaa |
26200118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 29623333 - 29623198
Alignment:
| Q |
166 |
actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgcttgtg |
265 |
Q |
| |
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||||||||||||||||| || |||| |||||||||||||| |||| |||||| |||| || || ||| | ||||||||||| || |||||| ||| |
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| T |
29623333 |
actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtg |
29623234 |
T |
|
| Q |
266 |
---ttctacacgattagaacatatatcgtattgaat |
298 |
Q |
| |
|
|||| || ||| ||||||||||||||||||||| |
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|
| T |
29623233 |
ttcttcttcatgatgagaacatatatcgtattgaat |
29623198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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