View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_19 (Length: 482)
Name: NF14366_low_19
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 39671152 - 39671617
Alignment:
| Q |
1 |
gttcaaatatcatttctctttatctaatagactttatattttggctattaaaatgtgttaggtgcatgta---------aggggtttggagtatatgtcg |
91 |
Q |
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| T |
39671152 |
gttcaaatatcatttctctttatctaatagactttatattttggctattaaaatgtgttaggtgcatgtatatttagtaaggggtttggagtatatgtcg |
39671251 |
T |
|
| Q |
92 |
tttgttggtcttggaggagaatacttttcatgtgtgaatttgagttaggtttaaaatgannnnnnnnnnnngtttataattgttttgagcaagcgattgt |
191 |
Q |
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| T |
39671252 |
tttgttggtcttggaggagaatacttttcatgtgtgaatttgagttaggtttagaatgaatttttttt---gtttataattgttttgtgcaagcgattgt |
39671348 |
T |
|
| Q |
192 |
atttgatcgatagacatgacgaaatgttcttagtgaataatacattgtcaaaggacttataaggtgtcaagaacatatcatatatttgaatattattcat |
291 |
Q |
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| T |
39671349 |
atttgatcgatagacatgacgaaatgttcttagtgaataatacattgtcaaaggacttataaggtgtcaagaacat-tcatatatttgaatattattcat |
39671447 |
T |
|
| Q |
292 |
attgtgacattatttggaataacaatgcacctttgaaagtgcctcttttgtatataaannnnnnnaataagaagtttcctacaatgcggactgttgaatc |
391 |
Q |
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| T |
39671448 |
attgtgacattatttggaataaaaatgcacctttgaaagtgcctcttttgtatataaatttttttaataacaagtttcctacaatgcggactgttgaa-- |
39671545 |
T |
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| Q |
392 |
actctcactcttctacggtttagatcagctattaagtgcgtgtaactgcgtgaaacatttacagcaggtgatctag |
467 |
Q |
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| T |
39671546 |
----tcactcttctaaagttcagatcagctattaaatgcgtgtaactgcgtgaagcatttacagcaggtgatctag |
39671617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 5859040 - 5859003
Alignment:
| Q |
432 |
tgtaactgcgtgaaacatttacagcaggtgatctaggt |
469 |
Q |
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| T |
5859040 |
tgtaactgcgtgaaacatttagagcaggggatctaggt |
5859003 |
T |
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