View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_20 (Length: 467)
Name: NF14366_low_20
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 22 - 459
Target Start/End: Complemental strand, 4878937 - 4878500
Alignment:
| Q |
22 |
caaggccttccttgatttaactgaggactggcaagacatgaacttgaaccttgcaaaccatttggctgacaattaggtgattgttgacctgaattctctg |
121 |
Q |
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| T |
4878937 |
caaggtcttccttgatttaactgaggactggcaagacatgaacttgaaccttgcaaactatttggctgacaattaggtgattgttgacctgaattctctg |
4878838 |
T |
|
| Q |
122 |
tttgtggagttacttgattatcattagtagcaagcattctgctaggtcctctttgatccatgaacaaatcagtttcgtcgtcgccggtgactaagcagtg |
221 |
Q |
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| T |
4878837 |
tttgtggagttacttgattatcattagtagcaagcattctgctaggtcctctttgatccatgaacaaatcagtttcgtcgtcgccggtgactaagcagtg |
4878738 |
T |
|
| Q |
222 |
aaagccaatgcatctttgaacttgagtattgttgttgttcaacttggaatccaaagcagcagcaaccttgttatggagttgtgtgatgaataatatcaac |
321 |
Q |
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| T |
4878737 |
aaagccaatgcatctttgaacttgagtattgttgttgttcaacttggaatccaaagcagcagcaaccttgttatggagttgtgtgatgaataatatcaac |
4878638 |
T |
|
| Q |
322 |
aacacgagagnnnnnnntcccttcatttttcttaaaaaataaaattaagatatttggtgccagtttaattcatcaatatataaagaatcaaagaataatt |
421 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
4878637 |
aacactagagaaaaaaatcccttcatttttcttaaaaaataaaattaagctatttggtgacaatttaattcatcaatatataaagaatcaaagaataatt |
4878538 |
T |
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| Q |
422 |
tggggtgcattaacaaattgttctttcactcactctct |
459 |
Q |
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| T |
4878537 |
tggggtgcattaacaaattgttctttcactcactctct |
4878500 |
T |
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