View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_21 (Length: 464)
Name: NF14366_low_21
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 214 - 446
Target Start/End: Complemental strand, 28898450 - 28898217
Alignment:
| Q |
214 |
tttgttgtagtaatagttattctataaacaaaatcacaagtctcttgtatgtgttgaatgatata--cttcaattaaaatatttatcgacttgtgtcatg |
311 |
Q |
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| T |
28898450 |
tttgttgcagtaatagttattctataaacaaaatcacaagtctcttgtatatgttgaatgatatatacttcaattaaaatatt-atcgacttgtgtcatg |
28898352 |
T |
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| Q |
312 |
cagttctaaaatttctacatcaacatagccaactaattttgaattggatacatttgaatgaaataagcatattcatttcctctttaaagtaaccaagtat |
411 |
Q |
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| T |
28898351 |
cagttctaaaatttctagatcaacataaccaactaattttgaattggatacatttgaatgaaataagcatattcatttcctctttaaagtaaccaagtat |
28898252 |
T |
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| Q |
412 |
atacttgcatctattccaatatctttacacatgtg |
446 |
Q |
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| T |
28898251 |
atacttgcatctattccaatatctttacacatgtg |
28898217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 28898643 - 28898494
Alignment:
| Q |
68 |
gactccagaacatactcatttctcttactcatgtagacaaatcatctttgaaacatctaaaatcaatctcatataatagctgcacaaatattttagttgg |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28898643 |
gactccagaacatactcatttctcttactcatgtagacacataatctttgaaacatctaaaatcaatctcatataatagctgcacaaatattttagttgg |
28898544 |
T |
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| Q |
168 |
ccataactttgtaaaaagatgtcttagatattattacataaacaactttg |
217 |
Q |
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| T |
28898543 |
ccataactttgtaaaatgatgtcttagatattattacataaacaactttg |
28898494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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