View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_22 (Length: 458)

Name: NF14366_low_22
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_22
NF14366_low_22
[»] chr7 (6 HSPs)
chr7 (17-447)||(3598635-3599057)
chr7 (17-169)||(22005897-22006049)
chr7 (17-169)||(7892673-7892825)
chr7 (180-247)||(7892814-7892881)
chr7 (180-247)||(22006038-22006105)
chr7 (18-91)||(13604144-13604217)
[»] chr6 (2 HSPs)
chr6 (17-169)||(3590518-3590670)
chr6 (180-247)||(3590659-3590726)
[»] chr5 (3 HSPs)
chr5 (17-169)||(32674189-32674341)
chr5 (180-247)||(32674330-32674397)
chr5 (398-447)||(4356335-4356384)
[»] chr4 (6 HSPs)
chr4 (17-169)||(41860528-41860680)
chr4 (17-169)||(52681650-52681802)
chr4 (180-247)||(41860472-41860539)
chr4 (180-247)||(52681791-52681858)
chr4 (17-110)||(30576545-30576638)
chr4 (32-94)||(14991361-14991423)
[»] chr3 (6 HSPs)
chr3 (17-169)||(36092458-36092610)
chr3 (17-169)||(18200666-18200818)
chr3 (17-169)||(26950437-26950589)
chr3 (180-247)||(18200807-18200874)
chr3 (180-239)||(26950578-26950637)
chr3 (180-247)||(36092402-36092469)
[»] chr2 (6 HSPs)
chr2 (17-169)||(13907179-13907331)
chr2 (17-169)||(26454824-26454976)
chr2 (17-169)||(40604661-40604813)
chr2 (180-247)||(13907320-13907387)
chr2 (180-247)||(26454965-26455032)
chr2 (180-247)||(40604802-40604869)
[»] chr8 (2 HSPs)
chr8 (17-169)||(14995135-14995287)
chr8 (180-247)||(14995079-14995146)
[»] chr1 (6 HSPs)
chr1 (17-169)||(35595605-35595757)
chr1 (17-169)||(2045904-2046056)
chr1 (180-247)||(35595549-35595616)
chr1 (180-247)||(2045848-2045915)
chr1 (398-447)||(45221470-45221519)
chr1 (32-99)||(52589715-52589782)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 447
Target Start/End: Complemental strand, 3599057 - 3598635
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||          
T  3599057 aataagagtgggagcatttgtttagtttgatttttggttatttgtatttcgatgactttttgaattgcattgctatctaatttattatcatctctttttt 3598958  T
Q  117 ngtttgttatattctaga------aggaggtttatgcagtggtggttgttgcaagaaggttgcaagaaggttgcaagaaggccctcgcagtgataattta 210  Q
     |||||||||||||||||      ||||||||||||| ||||||||||                      ||||||||||||||||||  ||||||||||    
T  3598957 tgtttgttatattctagatctagaaggaggtttatgcggtggtggttg----------------------ttgcaagaaggccctcgcgatgataattta 3598880  T
Q  211 tacggtggtggttgattaaactgatgtgattgtgtctaccctctctatattgtgtgttgatcgagattgctgaagnnnnnnn--ggcttgctgcagcttt 308  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  3598879 tacggtggtggttgattaaactgatgtgactgtgtctaccctctctatattgtgtgttgatcgagattgctgaagaaaaaaaaaggcttgctgcagcttt 3598780  T
Q  309 agaaacacaaattgcggaaggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattg------tagtt 402  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      | |||    
T  3598779 agaaacacaaattgcagatggccttaataattattgtcctaaattattaatccttttctagagattttaggatgctctaaggaggattggatacttggtt 3598680  T
Q  403 actcttctcttttgaatagattattttcatgagttgttagttcat 447  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  3598679 actcttctcttttgaatagtttattttcatgagttgttagttcat 3598635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 22005897 - 22006049
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  22005897 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 22005996  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22005997 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 22006049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 7892673 - 7892825
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||          
T  7892673 aataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctttttt 7892772  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7892773 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 7892825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 7892814 - 7892881
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  7892814 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 7892881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 22006038 - 22006105
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  22006038 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 22006105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13604217 - 13604144
Alignment:
Q  18 ataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgcta 91  Q
    |||||||||  | |||||||||| ||||||||||||||||| |||||| | ||| | ||| ||||| |||||||    
T  13604217 ataagagtaataacatttgtttaatttgatttttggttattcgtaatctggtgagtgtttaaattgtattgcta 13604144  T

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Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 3590518 - 3590670
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  3590518 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 3590617  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3590618 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 3590670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 3590659 - 3590726
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  3590659 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattaaactgatgtgactgtgtct 3590726  T

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Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 32674189 - 32674341
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  32674189 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 32674288  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32674289 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 32674341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 32674330 - 32674397
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  32674330 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 32674397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 447
Target Start/End: Original strand, 4356335 - 4356384
Alignment:
Q  398 tagttactcttctcttttgaatagattattttcatgagttgttagttcat 447  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  4356335 tagttactcttctcttttgaattgtttattttcaggagttgttagttcat 4356384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 41860680 - 41860528
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  41860680 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 41860581  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41860580 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 41860528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 52681650 - 52681802
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||          
T  52681650 aataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctttttt 52681749  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  52681750 tgtttgttatattctagaaggagatttatgcggtggtggttgttgcaagaagg 52681802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 41860539 - 41860472
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  41860539 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 41860472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 52681791 - 52681858
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  52681791 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 52681858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 30576638 - 30576545
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctc 110  Q
    |||||||| | |||| |||||||| || ||||||| ||||||||||||  || || |||||||||| ||||| |||||||||||||| ||||||    
T  30576638 aataagagcaagagcttttgtttaattggattttttgttatttgtaattcgacgagtttttgaatttcattgttatctaatttattaccatctc 30576545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 14991361 - 14991423
Alignment:
Q  32 atttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatct 94  Q
    ||||||||| |||||| |||||||||||||| |  |||||  || ||||||||||||||||||    
T  14991361 atttgtttaatttgatctttggttatttgtattatgatgagattctgaattgcattgctatct 14991423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 36092610 - 36092458
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  36092610 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatctgatgactttttgaattgcattgctatctaatttattatcatctctttttt 36092511  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36092510 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 36092458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 18200666 - 18200818
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  18200666 aataagaataggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 18200765  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18200766 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 18200818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 26950437 - 26950589
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||          
T  26950437 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgttatctaatttattatcatctctttttt 26950536  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26950537 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 26950589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 18200807 - 18200874
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  18200807 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattaaactgatgtgactgtgtct 18200874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 26950578 - 26950637
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtga 239  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  26950578 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtga 26950637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 36092469 - 36092402
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||    
T  36092469 gttgcaagaaggccctcgcggtgataatttatacagtggtggttgattatactaatgtgattgtgtct 36092402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 13907179 - 13907331
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  13907179 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 13907278  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13907279 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 13907331  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 26454824 - 26454976
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||          
T  26454824 aataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattgcattgctatctaatttattatcatctctttttt 26454923  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26454924 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 26454976  T

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Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 40604661 - 40604813
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||          
T  40604661 aataagagtatgagcatttgtttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctttttt 40604760  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40604761 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 40604813  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 13907320 - 13907387
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  13907320 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgaatgtgtct 13907387  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 26454965 - 26455032
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  26454965 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 26455032  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 40604802 - 40604869
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  40604802 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 40604869  T

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Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 14995287 - 14995135
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||          
T  14995287 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatccgatgactgtttgaattgcattgctatctaatttattatcatctctttttt 14995188  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14995187 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 14995135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 14995146 - 14995079
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||    
T  14995146 gttgcaagaaggccctcgtggtgataatttatacggtggtggttgattaaactgatgtgactgtgtct 14995079  T

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Target: chr1 (Bit Score: 116; Significance: 8e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 35595757 - 35595605
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||          
T  35595757 aataagagtgggagcatttgtttagtttgatttttggttatttgtaatccgttgactttttgaattgcattgctatctaatttattatcatctccttttt 35595658  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35595657 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 35595605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 2046056 - 2045904
Alignment:
Q  17 aataagagtaggagcatttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaatttattatcatctcnnnnnn 116  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||          
T  2046056 aataagagtatgagcatttatttagtttgatttttggttatttgtaatccgatgactttttgaattggattgctatctaatttattatcatctctttttt 2045957  T
Q  117 ngtttgttatattctagaaggaggtttatgcagtggtggttgttgcaagaagg 169  Q
     |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2045956 tgtttgttatattctagaaggaggtttatgcggtggtggttgttgcaagaagg 2045904  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 35595616 - 35595549
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  35595616 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattaaactgatgtgactgtgtct 35595549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 2045915 - 2045848
Alignment:
Q  180 gttgcaagaaggccctcgcagtgataatttatacggtggtggttgattaaactgatgtgattgtgtct 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  2045915 gttgcaagaaggccctcgcggtgataatttatacggtggtggttgattatactgatgtgactgtgtct 2045848  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 447
Target Start/End: Complemental strand, 45221519 - 45221470
Alignment:
Q  398 tagttactcttctcttttgaatagattattttcatgagttgttagttcat 447  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  45221519 tagttactcttctcttttgaattgtttattttcatgagtttttagttcat 45221470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 52589715 - 52589782
Alignment:
Q  32 atttgtttagtttgatttttggttatttgtaatcagatgactttttgaattgcattgctatctaattt 99  Q
    ||||||||  |||||||||| ||||||||||||   | || |||||||||||||||||||||||||||    
T  52589715 atttgtttgatttgattttttgttatttgtaatgtaacgagtttttgaattgcattgctatctaattt 52589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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