View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_24 (Length: 421)

Name: NF14366_low_24
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_24
NF14366_low_24
[»] chr7 (3 HSPs)
chr7 (18-202)||(11098512-11098696)
chr7 (264-326)||(11098758-11098820)
chr7 (110-191)||(781351-781432)
[»] chr6 (3 HSPs)
chr6 (18-202)||(17998633-17998817)
chr6 (264-326)||(17998509-17998571)
chr6 (60-134)||(6530741-6530815)
[»] chr8 (3 HSPs)
chr8 (18-202)||(36283625-36283810)
chr8 (264-326)||(36283501-36283563)
chr8 (112-157)||(31710416-31710461)
[»] chr1 (1 HSPs)
chr1 (275-326)||(19913166-19913217)
[»] scaffold0010 (1 HSPs)
scaffold0010 (110-191)||(128644-128725)
[»] chr5 (3 HSPs)
chr5 (275-326)||(40571660-40571711)
chr5 (338-393)||(15249219-15249276)
chr5 (109-157)||(11203645-11203693)
[»] chr4 (4 HSPs)
chr4 (100-190)||(10755777-10755867)
chr4 (100-190)||(10969546-10969636)
chr4 (100-189)||(723290-723379)
chr4 (111-154)||(12325892-12325935)
[»] chr3 (2 HSPs)
chr3 (100-191)||(806770-806861)
chr3 (112-157)||(17594919-17594964)
[»] scaffold0130 (1 HSPs)
scaffold0130 (112-162)||(17288-17338)


Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 11098512 - 11098696
Alignment:
Q  18 aattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagaggagct 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11098512 aattgccagaagatgatatatagtctcagattttattttgaaatatacatactttggatctacttgagagctatgaaaaattcaaccaacaagaggagct 11098611  T
Q  118 caaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098612 caaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 11098696  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 11098758 - 11098820
Alignment:
Q  264 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatt 326  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11098758 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatt 11098820  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 781432 - 781351
Alignment:
Q  110 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 191  Q
    ||||||||||| ||||||||||||||||| | | |||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  781432 gaggagctcaattcatcaccatcatagtcttccatatgaacaagcagagatgaatacattatggtttctcttgatgccaaca 781351  T

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Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 17998817 - 17998633
Alignment:
Q  18 aattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagaggagct 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17998817 aattgccagaagatgatatatagtctcagattttattttgaaatatacatactttggatctacttgagagctatgaaaaattcaaccaacaagaggagct 17998718  T
Q  118 caaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998717 caaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 17998633  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 17998571 - 17998509
Alignment:
Q  264 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatt 326  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17998571 gagacaatatatttccacttgttgggtaaataatgctaggaaagaattaagaaattgtatatt 17998509  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 6530815 - 6530741
Alignment:
Q  60 atatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagaggagctcaaatcatcaccatcat 134  Q
    |||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| |||||||||||||    
T  6530815 atatacacactttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccatcat 6530741  T

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Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 36283810 - 36283625
Alignment:
Q  18 aattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaa-ttcaaccaacaagaggagc 116  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  36283810 aattgccagaagatgatatatagtctcagattttattttgaaatatacacactttggatctacttgagagctatgaaaaaattcaaccaacaagaggagc 36283711  T
Q  117 tcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatgg 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36283710 tcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacttggaagaatgg 36283625  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 36283563 - 36283501
Alignment:
Q  264 gagacaatatatttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatt 326  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36283563 gagacaatatatttccacttgttggataagtaatgctaggaaagaattaagaaattgtatatt 36283501  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 31710416 - 31710461
Alignment:
Q  112 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 157  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||    
T  31710416 ggagctcaattcgtcaccatcatagtcatccttatgaacaggcgga 31710461  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 19913217 - 19913166
Alignment:
Q  275 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatt 326  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19913217 tttccacttgttgggtaagtaatgctaggcaagaattaagaaattgtatatt 19913166  T

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Target: scaffold0010 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 128725 - 128644
Alignment:
Q  110 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 191  Q
    ||||||||||| ||||||||||||||||||| |||||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  128725 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcagagatgaatacattatggtttctcttgatgccaaca 128644  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 40571711 - 40571660
Alignment:
Q  275 tttccacttgttgggtaagtaatgctaggaaagaattaagaaattgtatatt 326  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  40571711 tttccgcttgttgggtaagtaatgctaggcaagaattaagaaattgtatatt 40571660  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 15249276 - 15249219
Alignment:
Q  338 tatgtgcctcacctgcttataaatgtgaaac--attaaactctcgctgctgtgtgcca 393  Q
    |||||||||||||||||||||||||||||||  ||| |||||| ||||||||||||||    
T  15249276 tatgtgcctcacctgcttataaatgtgaaacatattgaactcttgctgctgtgtgcca 15249219  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 11203645 - 11203693
Alignment:
Q  109 agaggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 157  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  11203645 agaggagctcaattcgtcaccatcatagtcttccttataaacaggcgga 11203693  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 10755777 - 10755867
Alignment:
Q  100 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 190  Q
    ||||||||||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10755777 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10755867  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 10969546 - 10969636
Alignment:
Q  100 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 190  Q
    ||||||||||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10969546 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10969636  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 189
Target Start/End: Original strand, 723290 - 723379
Alignment:
Q  100 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaa 189  Q
    |||| |||||||||| ||||| |||| | ||| ||||||||||| |||| ||||||||||| |||||||||||| | | |||||||||||    
T  723290 caacaaacaagaggacctcaattcataaacattatagtcattctcatgagcaggcggagatgaattcattatggttcctctcgatgccaa 723379  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 12325892 - 12325935
Alignment:
Q  111 aggagctcaaatcatcaccatcatagtcattcttatgaacaggc 154  Q
    ||||||||||||| |||||||||||||| | |||||||||||||    
T  12325892 aggagctcaaatcgtcaccatcatagtcctccttatgaacaggc 12325935  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 806770 - 806861
Alignment:
Q  100 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 191  Q
    ||||||||||||||| | ||| |||| ||||| |||||||| |  || | |||| |||||| |||||||||||| ||| |||||||| ||||    
T  806770 caaccaacaagaggaccacaattcataaccattatagtcatccacataagcaggaggagatgaattcattatggtttctctcgatgctaaca 806861  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 157
Target Start/End: Original strand, 17594919 - 17594964
Alignment:
Q  112 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 157  Q
    ||||||||| || |||||||||||||||| ||| ||||||||||||    
T  17594919 ggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga 17594964  T

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Target: scaffold0130 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 17338 - 17288
Alignment:
Q  112 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataa 162  Q
    |||| |||| || |||||||||||||||| |||||||||||||||| ||||    
T  17338 ggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataa 17288  T

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