View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_25 (Length: 418)
Name: NF14366_low_25
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 51627923 - 51627534
Alignment:
| Q |
20 |
cccgcaacttaaattttcatgtggatttgtactccatactaacacccccagaagtgaaaatctataaaatattgtcaatcatgaaaaatttgtatgttga |
119 |
Q |
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| T |
51627923 |
cccgcaacttaaattttcatgtggatttgtactccatactaacacccccagaagtgaaaatctataaaatattgtcaatcatgaaaaatgtgtatgttga |
51627824 |
T |
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| Q |
120 |
gcacctttcttaaacattgtcataaagcaagtatctcaaagcttaggtgaagacacatgaatgatgaatgactaacatctgtaacaaaacccatctaggt |
219 |
Q |
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| T |
51627823 |
gcacctttcttaaacattgtcataaagcaagtatctcaaagcttaggtgaagacgcatgaatgatgaatgactaacatctgtaacaaaacccatctaggt |
51627724 |
T |
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| Q |
220 |
ttttagctaatagatgatcttacacaaagaacttagcatacctttgaaatttcttcacaatgcttcacaacaactaatatatttgtataacgtccatgca |
319 |
Q |
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| T |
51627723 |
ttttagctaatagatgatcttacacaaagaacttagcatacctttgaaatttcttcacaatgcttcacaacaactgatatatttgtataacgtccatgca |
51627624 |
T |
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| Q |
320 |
ctagcacataggcccacaagagaagcttccttgggatgctcagatcaagggcttcaactccggtcatagttggatcgaacggtgtctctg |
409 |
Q |
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| T |
51627623 |
ctagcacataggcccacaagagaagcttccttgggatgctcagatcaagggcttcaactccggtcatagttggatcgaacggtgtctctg |
51627534 |
T |
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