View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_27 (Length: 403)
Name: NF14366_low_27
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 29069017 - 29068676
Alignment:
| Q |
16 |
ctaagtaaatccacaaaaaatgaaaatgaagcataaatttgctttatgtattatatgttgatgagaaagtgagcaaggtgaatgaatttgcttgttatct |
115 |
Q |
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| T |
29069017 |
ctaagtaaatccacaaaaaatgaaaaagaagcataaatttgctttatgtattatatgttgatgagaaagtgagcaaggtgaatgaatttgcttgttatct |
29068918 |
T |
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| Q |
116 |
tcttttaacatgctatctttgaagaaaattaatgcggaaaaaagggagaattgtgatcatctaaattcactcattgtttttcattgttttatttaatcaa |
215 |
Q |
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| T |
29068917 |
tcttttaacatgctatctttgaagaaaaataatgcggaaaaaagggagaattgtgatcatctaaattcactcattgtttttcattgttttatttaatcaa |
29068818 |
T |
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| Q |
216 |
gaccaatcaagtttatacaatcagtccatcgtcgttagagtttcaaatgattttcaagtaccggtc------catagtggaacctgtcacattttgggat |
309 |
Q |
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| T |
29068817 |
ggccaatcaagtttatacaatcagtccatcgtcgttagagtttcaaatgatttataagtaccgttcataatggatagtggaacctgtcacattttgggat |
29068718 |
T |
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| Q |
310 |
aaaaaattgtgggccgacaaatcctaaatatgcatggaggct |
351 |
Q |
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| T |
29068717 |
aaaaatttgtgggccaacaaatcctaaatatgcatggaggct |
29068676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 403
Target Start/End: Complemental strand, 29059720 - 29059666
Alignment:
| Q |
349 |
gctaaaggtccgacactatttcatctttcgataactagattatttcattaccaaa |
403 |
Q |
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| T |
29059720 |
gctaaaggtccgacactatttcatcattcgataactagattctttcattaccaaa |
29059666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 40999079 - 40999043
Alignment:
| Q |
239 |
gtccatcgtcgttagagtttcaaatgattttcaagta |
275 |
Q |
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| T |
40999079 |
gtccatcatcgttagagtttcaaatgatttttaagta |
40999043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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