View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_29 (Length: 389)
Name: NF14366_low_29
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 7e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8392986 - 8393231
Alignment:
| Q |
1 |
acaaattaaaagaaggaaaataattcttcaacacccaaaaccatttta-----ccactagagagaaaaagaaatcaagagagtaaaataatacatatggt |
95 |
Q |
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| T |
8392986 |
acaaattaaaagaaggaaaataattcttcaacacccaaaaccattttactttaccactagagagaaaaagaaatcaagagagtaaaataatacatatggt |
8393085 |
T |
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| Q |
96 |
gaatatatgataataagaaagagtggtaaaaggaaaatgagatgttgaatatctgtatgaaaaataaaa-tgggtgtttttgtgagtttaatttaactga |
194 |
Q |
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| T |
8393086 |
gaatatatgataataagaaagagtggtaaaaggaaaatgagatgttgaatattggtatgaaaaataaaagggggtgtctatgtgagtttaatttagctgg |
8393185 |
T |
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| Q |
195 |
tatgtacaatgcataatatatagtcaaaggtatgaggttcatatct |
240 |
Q |
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| T |
8393186 |
tatgtacaatgcataatatatagttaaaggtatgagattcaaatct |
8393231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 8393286 - 8393356
Alignment:
| Q |
301 |
gaacaccgaaattactagaaaacaagaggaaataacaaacccaatgattcccatttcccataccataccat |
371 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8393286 |
gaacaccaaaattactagaaaacaagagaaaataacaaacccaatgattcccatttcccataccataccat |
8393356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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