View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_30 (Length: 383)
Name: NF14366_low_30
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 12691552 - 12691901
Alignment:
| Q |
19 |
gggtctataaataggaatcttaaaaattaaactagaggagtgggatcttccctatttgctcgtgagaagaaaaagggtaaagggaatactatttcagcaa |
118 |
Q |
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| T |
12691552 |
gggtctataaataggaatcttaaaaattaaactagaggagtgggatcttccctatttgctcgtgagaagaaaaagggtaaagggaatactatttcagcaa |
12691651 |
T |
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| Q |
119 |
gaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttatttttgtaatgctacctacatttggtaacccttctcgaattt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12691652 |
gaacactaacagcaaatgttcatcttctatgtggtaataatttctaaactcatatttatttttgtcatgctacctacatttggtaacccttctcgaattt |
12691751 |
T |
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| Q |
219 |
taaaaatgttgagacaaagatttctttttcttatttatcattcttaaacaaaacatcaacagataaagaaaaaaccagtgaatcaattgtttatttgtta |
318 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12691752 |
taaaaatgttgaatcaaagatttctttttcttatttatc-ctcttaaacaaaacatcaacagataaagaaaaaaccagtgaatcaattgtttatttgtta |
12691850 |
T |
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| Q |
319 |
cagataatgggaactagatatttccattatcttaaaactttatttatttat |
369 |
Q |
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| T |
12691851 |
cagataatgggaactagatatttccattatcttaaaactttatttatttat |
12691901 |
T |
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