View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_34 (Length: 367)
Name: NF14366_low_34
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 358
Target Start/End: Original strand, 49248629 - 49248965
Alignment:
| Q |
22 |
taagcaatgtttaaaaatcaaacgaaggtttacaccttctgtaatctagttatttggacgattcaatcacaatttcatctaaaattgaaccgtctaaagc |
121 |
Q |
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| T |
49248629 |
taagcgatgtttaaaaatcaaacgaagatttacaccttctctaatctagttatttggacgattcaatcacaatttcatctaaaattgaaccgtctaaagc |
49248728 |
T |
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| Q |
122 |
aattgaaccatgatttggaggtctcgttagtttaattcagtttcaattattaagatattgacaataagtaaacttgaatctaacatcttataacacacaa |
221 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49248729 |
aattgaaccatgatttggaggtctcgttggtttaattcaatttcaattattaagatattgacaataagtaaacttgaatctaacatcttataacacacaa |
49248828 |
T |
|
| Q |
222 |
aatgatgtgttagcaatcagtgaaacatttttgaactctaacaatacatgtgtaacgtgaaacaaaagttattcatgcacttgtaattgcatagttctct |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49248829 |
aatgatgtgttagcaatcagtgaaacatttttgaactctaacaatacatgtttaacgtgaaacaaaagttattcatgcacttgtaattgtatagttctct |
49248928 |
T |
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| Q |
322 |
atatgaatttataatttcgcattataaaagagtataa |
358 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
49248929 |
atatgaatttataatttcgcattataaaagagtataa |
49248965 |
T |
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