View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_38 (Length: 350)
Name: NF14366_low_38
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 3 - 333
Target Start/End: Complemental strand, 9786285 - 9785950
Alignment:
| Q |
3 |
cgacatgaagtcgttgtctttttgttttagccttgttgtacggttgcaatttgcaatggatggtaagcaaatatcacacgattaaaacaagtactttcct |
102 |
Q |
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| T |
9786285 |
cgacatgaagtcgttgtctttttgttttagccttgttgtacggttgcaatttgcaatggatggtaagcaaatatcacacgattaaaacaagtactttcct |
9786186 |
T |
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| Q |
103 |
gtttttc-atatattacttgcaaacttttcaatttggcatgatgcgtggatattattattatagcaaagttttgtagaatcaggttacccaccacacaaa |
201 |
Q |
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| T |
9786185 |
gtttttctatatattacttgcaaacttttcaatttggcacgatttgtgga------tattatagcaaagttttgtagaatcaggttacccaccacacaaa |
9786092 |
T |
|
| Q |
202 |
atcaaattaaatttattataaattataggagaaattgtccactcaattcctctaaagca----------gatacgattttggaggatcaaaagtaattct |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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| T |
9786091 |
atcaaattaaatttattataaattataggagaaattgtccactcaattcctctaaagcacatatgtttggttacgattttggaggatcaagagtaattct |
9785992 |
T |
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| Q |
292 |
agaagatgtagaattgattttatcatctatcttgcaaaaaca |
333 |
Q |
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| T |
9785991 |
agaagatgtcgaattgattttatcatgtatcttgcaaaaaca |
9785950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 317
Target Start/End: Complemental strand, 1872400 - 1872350
Alignment:
| Q |
267 |
attttggaggatcaaaagtaattctagaagatgtagaattgattttatcat |
317 |
Q |
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| T |
1872400 |
attttggaggatcaaaagtgattttagaaggtgtagaattgtttttatcat |
1872350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 314
Target Start/End: Original strand, 38453283 - 38453324
Alignment:
| Q |
273 |
gaggatcaaaagtaattctagaagatgtagaattgattttat |
314 |
Q |
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| T |
38453283 |
gaggatcaaaagtaattctagaggttgtagaattgattttat |
38453324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 22915983 - 22915935
Alignment:
| Q |
269 |
tttggaggatcaaaagtaattctagaagatgtagaattgattttatcat |
317 |
Q |
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| T |
22915983 |
tttggagggtcaaaagtgattatagaacttgtagaattgattttatcat |
22915935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 46870327 - 46870377
Alignment:
| Q |
267 |
attttggaggatcaaaagtaattctagaagatgtagaattgattttatcat |
317 |
Q |
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|||||||||| |||||||| ||| |||| | |||||||||||||||||||| |
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| T |
46870327 |
attttggagggtcaaaagtgattatagatgttgtagaattgattttatcat |
46870377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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