View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_39 (Length: 346)
Name: NF14366_low_39
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 36523185 - 36523501
Alignment:
| Q |
19 |
aaataccataagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccacca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523185 |
aaataccataagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccacca |
36523284 |
T |
|
| Q |
119 |
tgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacct |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523285 |
tgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacct |
36523384 |
T |
|
| Q |
219 |
gcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataagga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523385 |
gcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataagga |
36523484 |
T |
|
| Q |
319 |
aaaaccaattcatctca |
335 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36523485 |
aaaaccaattcatctca |
36523501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 36530018 - 36530329
Alignment:
| Q |
19 |
aaataccataagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccacca |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
36530018 |
aaataccgtaagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaaccagctgaaaggatgtaagtatgtctagcccacca |
36530117 |
T |
|
| Q |
119 |
tgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacct |
218 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| |
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| T |
36530118 |
tgctttgaactttctataaacatagaaattgaaaaatattccaacaatcccccaagtaatataattcacagatctcacaggtgggatgtcagatgcacct |
36530217 |
T |
|
| Q |
219 |
gcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataagga |
318 |
Q |
| |
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|| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| | |||||| ||||||| |
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| T |
36530218 |
gcaatgataataggaatgttgatgaattgaatccacttttggttgggaaatttgagagaaagaagccacacgggaactggtgcgattagaccgataagga |
36530317 |
T |
|
| Q |
319 |
aaaaccaattca |
330 |
Q |
| |
|
|||||||||||| |
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|
| T |
36530318 |
aaaaccaattca |
36530329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 36535629 - 36535943
Alignment:
| Q |
18 |
aaaataccataagattgaagagaaaaataaagtagtaaacctataaaggcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccacc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
36535629 |
aaaataccataggattgaagagaaaaataaagtactaaacccataaaagcaactccagcatctaaaccagctgagagaatataagtatgtctagcccacc |
36535728 |
T |
|
| Q |
118 |
atgccttgaactttctataaacatagaaattgaaaaccattccaacaattccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacc |
217 |
Q |
| |
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| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||| |
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| T |
36535729 |
aaactctgaactttctataaacatagaaattgaaaaacattccaacaattccccaagtaatataattcacagatctcctgggaggaatagtagatgcacc |
36535828 |
T |
|
| Q |
218 |
tgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataagg |
317 |
Q |
| |
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| | ||||||||||||||| || |||| ||||||||| |||||| ||||||||| ||||||||||||||| || |||||||||| ||| ||||||||| |
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| T |
36535829 |
tacaatgataataggaatgttgataagtttaatccacttgtggttaggaaatttgatagaaagaagccacaccggtacaggtgcaattaggccaataagg |
36535928 |
T |
|
| Q |
318 |
aaaaaccaattcatc |
332 |
Q |
| |
|
||||||||||||||| |
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|
| T |
36535929 |
aaaaaccaattcatc |
36535943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 331
Target Start/End: Complemental strand, 42060150 - 42059891
Alignment:
| Q |
72 |
ccagcatctaaaccagcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaattcccc |
171 |
Q |
| |
|
|||||||| ||| |||| || || || ||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| | |||||||| | ||||| |
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|
| T |
42060150 |
ccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaagaagattccaactactcccc |
42060051 |
T |
|
| Q |
172 |
aagtaatgtaattcacagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacgaaattt |
271 |
Q |
| |
|
| | ||| ||||| | ||||| ||||||| || ||| |||||| | ||||| || ||||| ||||||| ||||||||| ||||| | |||| |
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|
| T |
42060050 |
atgaaatataattgattgatctagctggtggtataccactggcacctccaatgataagtggcatgttgatgagttcaatccacttgtggttcgggtattt |
42059951 |
T |
|
| Q |
272 |
gagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcat |
331 |
Q |
| |
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| ||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
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|
| T |
42059950 |
gcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42059891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 66 - 330
Target Start/End: Complemental strand, 42075453 - 42075189
Alignment:
| Q |
66 |
gcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaa |
165 |
Q |
| |
|
||||| |||||||| ||| |||| || || || ||||| ||||||||||||||| ||||||| ||| | |||||||||| |||||| | |||||||||| |
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|
| T |
42075453 |
gcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccataccttgaattttttgtaaacatagatattgaagaagattccaacaa |
42075354 |
T |
|
| Q |
166 |
ttccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacg |
265 |
Q |
| |
|
|||||| | ||||||| | | ||||| ||||||| || || || ||||| |||||| || ||||| | ||||| |||||||||| |||| | |
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|
| T |
42075353 |
ctccccatgaaatgtaactgattgatctagctggtggtatacctttggcccctgcaatgataattggcatgttgacgagttcaatccactttcggtttgg |
42075254 |
T |
|
| Q |
266 |
aaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattca |
330 |
Q |
| |
|
||||| ||| |||||||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
42075253 |
gtatttgcgagctagaagccacactggaacaggcgcaagtagaccgatgaggaaaaaccaattca |
42075189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 331
Target Start/End: Complemental strand, 42084033 - 42083768
Alignment:
| Q |
66 |
gcaactccagcatctaaaccagcagaaaggatataagtatgtctagcccaccatgccttgaactttctataaacatagaaattgaaaaccattccaacaa |
165 |
Q |
| |
|
||||| |||||||| ||| |||| || || || ||||| ||||||||||||||||||||||| ||| | ||||||||||||||||| | |||||||||| |
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|
| T |
42084033 |
gcaacaccagcatccaaagcagctgagagaatgtaagtgtgtctagcccaccatgccttgaaatttttgtaaacatagaaattgaagaagattccaacaa |
42083934 |
T |
|
| Q |
166 |
ttccccaagtaatgtaattcacagatctcactggtggaatgccagatgcacctgcggcgataataggaatgttaatgagttgaatccacttttggttacg |
265 |
Q |
| |
|
|||||| | ||| ||||| | || || ||||||| || ||| |||||| | |||| || ||||| ||||||| ||||||||| ||||| | |
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|
| T |
42083933 |
ctccccatgaaatataattgattgacctagctggtggtataccactagcacctccaattataagtggcatgttgatgagttcaatccacttgtggttcgg |
42083834 |
T |
|
| Q |
266 |
aaatttgagagaaagaagccacactggaacaggtgcaagtagaccaataaggaaaaaccaattcat |
331 |
Q |
| |
|
||||| ||| |||| |||||| |||||||| ||||||||||| || ||||||||||||||||| |
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|
| T |
42083833 |
gtatttgcgagctagaaaccacaccggaacaggcgcaagtagaccgatgaggaaaaaccaattcat |
42083768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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