View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_4 (Length: 710)

Name: NF14366_low_4
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_4
NF14366_low_4
[»] chr8 (20 HSPs)
chr8 (355-603)||(6267255-6267503)
chr8 (371-579)||(3038472-3038679)
chr8 (371-579)||(7290785-7290993)
chr8 (370-576)||(4108692-4108895)
chr8 (449-579)||(23176561-23176690)
chr8 (392-579)||(18756441-18756628)
chr8 (488-579)||(34685958-34686049)
chr8 (487-579)||(28220807-28220898)
chr8 (488-579)||(30651017-30651108)
chr8 (371-491)||(1879088-1879208)
chr8 (190-254)||(31734371-31734435)
chr8 (192-258)||(39283758-39283824)
chr8 (185-258)||(22573186-22573259)
chr8 (371-491)||(1835247-1835367)
chr8 (317-357)||(6267545-6267585)
chr8 (207-258)||(11066534-11066585)
chr8 (527-576)||(1872689-1872738)
chr8 (185-258)||(9028625-9028698)
chr8 (388-510)||(30380955-30381079)
chr8 (207-256)||(38503855-38503904)
[»] chr1 (24 HSPs)
chr1 (371-579)||(15964166-15964374)
chr1 (371-579)||(27118396-27118604)
chr1 (367-579)||(13876693-13876905)
chr1 (371-576)||(16127586-16127788)
chr1 (371-579)||(10758074-10758282)
chr1 (390-572)||(25943283-25943465)
chr1 (437-576)||(31804861-31805000)
chr1 (488-579)||(3120636-3120727)
chr1 (488-579)||(47554938-47555029)
chr1 (371-505)||(16132541-16132675)
chr1 (190-259)||(6768312-6768381)
chr1 (184-258)||(26793808-26793882)
chr1 (408-491)||(21263907-21263990)
chr1 (189-254)||(9383222-9383287)
chr1 (510-579)||(16135528-16135597)
chr1 (371-491)||(421459-421579)
chr1 (184-241)||(42471963-42472020)
chr1 (207-258)||(50004909-50004960)
chr1 (196-258)||(19806758-19806820)
chr1 (486-536)||(43579462-43579512)
chr1 (494-578)||(3120249-3120333)
chr1 (184-257)||(49236219-49236292)
chr1 (195-242)||(38332376-38332423)
chr1 (542-579)||(5500591-5500628)
[»] chr2 (33 HSPs)
chr2 (371-579)||(41643938-41644147)
chr2 (370-579)||(18059136-18059345)
chr2 (370-579)||(15650913-15651122)
chr2 (371-579)||(6177841-6178048)
chr2 (387-579)||(27138795-27138987)
chr2 (371-579)||(18947384-18947580)
chr2 (371-576)||(19073424-19073623)
chr2 (370-548)||(34441729-34441904)
chr2 (371-579)||(18779181-18779383)
chr2 (370-579)||(41713229-41713435)
chr2 (437-579)||(39788384-39788526)
chr2 (437-579)||(38249912-38250050)
chr2 (370-576)||(42005454-42005657)
chr2 (488-579)||(17244844-17244935)
chr2 (491-579)||(19093640-19093728)
chr2 (189-258)||(40626520-40626589)
chr2 (190-254)||(6457653-6457717)
chr2 (420-491)||(7553469-7553540)
chr2 (488-565)||(18514520-18514597)
chr2 (504-576)||(34441657-34441728)
chr2 (177-242)||(1529661-1529726)
chr2 (425-491)||(32651957-32652023)
chr2 (527-572)||(40912471-40912516)
chr2 (376-491)||(30844918-30845033)
chr2 (527-570)||(32652621-32652664)
chr2 (425-488)||(40913164-40913227)
chr2 (207-245)||(18665224-18665262)
chr2 (417-490)||(6348832-6348905)
chr2 (189-258)||(40054458-40054527)
chr2 (376-484)||(58097-58204)
chr2 (189-236)||(3044871-3044918)
chr2 (217-254)||(39111666-39111703)
chr2 (527-572)||(43445342-43445387)
[»] chr5 (32 HSPs)
chr5 (376-579)||(22616564-22616767)
chr5 (371-576)||(41417356-41417561)
chr5 (371-579)||(36055649-36055856)
chr5 (371-579)||(31878449-31878658)
chr5 (371-579)||(10237480-10237687)
chr5 (408-576)||(33163618-33163786)
chr5 (375-578)||(21320821-21321024)
chr5 (386-579)||(27579109-27579300)
chr5 (367-491)||(25653646-25653770)
chr5 (373-488)||(10053291-10053406)
chr5 (488-579)||(29766576-29766667)
chr5 (398-491)||(12081129-12081222)
chr5 (425-491)||(13887361-13887427)
chr5 (207-254)||(13109764-13109811)
chr5 (416-491)||(21266130-21266205)
chr5 (189-258)||(34731320-34731389)
chr5 (529-572)||(12080515-12080558)
chr5 (207-254)||(13039770-13039817)
chr5 (370-489)||(26411362-26411481)
chr5 (425-491)||(8777275-8777341)
chr5 (527-572)||(8762977-8763022)
chr5 (527-572)||(13888329-13888374)
chr5 (522-579)||(25654566-25654623)
chr5 (451-491)||(25521705-25521745)
chr5 (527-579)||(33752482-33752534)
chr5 (371-491)||(33752910-33753030)
chr5 (527-579)||(33848121-33848173)
chr5 (408-491)||(13380602-13380685)
chr5 (425-484)||(25513895-25513954)
chr5 (267-309)||(15416354-15416395)
chr5 (196-233)||(16290716-16290753)
chr5 (527-572)||(26412052-26412097)
[»] chr3 (32 HSPs)
chr3 (371-578)||(44880857-44881063)
chr3 (371-579)||(19606688-19606896)
chr3 (371-579)||(32180525-32180729)
chr3 (371-578)||(38392403-38392610)
chr3 (371-574)||(49359407-49359610)
chr3 (371-556)||(7568516-7568701)
chr3 (371-579)||(40640405-40640616)
chr3 (426-576)||(45879264-45879414)
chr3 (447-579)||(26000674-26000806)
chr3 (426-579)||(7758198-7758350)
chr3 (447-579)||(47930441-47930573)
chr3 (426-579)||(51878235-51878387)
chr3 (371-462)||(53811867-53811958)
chr3 (371-491)||(42204412-42204530)
chr3 (187-263)||(45850748-45850824)
chr3 (527-579)||(11019700-11019752)
chr3 (367-463)||(4556603-4556703)
chr3 (489-560)||(31706760-31706831)
chr3 (425-491)||(48155075-48155141)
chr3 (426-491)||(47870312-47870377)
chr3 (195-254)||(20524907-20524966)
chr3 (189-255)||(32490957-32491023)
chr3 (527-576)||(36689674-36689723)
chr3 (527-572)||(48154468-48154513)
chr3 (202-258)||(38457788-38457844)
chr3 (371-491)||(54606772-54606892)
chr3 (195-254)||(51976243-51976302)
chr3 (188-258)||(40416999-40417069)
chr3 (530-579)||(40744213-40744262)
chr3 (378-491)||(43485384-43485497)
chr3 (184-241)||(45818592-45818649)
chr3 (527-556)||(47871210-47871239)
[»] chr7 (18 HSPs)
chr7 (371-579)||(22955086-22955294)
chr7 (371-579)||(4618529-4618737)
chr7 (367-579)||(49002288-49002498)
chr7 (371-579)||(8133333-8133541)
chr7 (370-576)||(5781583-5781786)
chr7 (371-579)||(37854069-37854276)
chr7 (374-579)||(23402146-23402350)
chr7 (437-579)||(40382020-40382163)
chr7 (367-579)||(7742981-7743204)
chr7 (450-579)||(4902465-4902594)
chr7 (371-491)||(19786350-19786470)
chr7 (488-579)||(10675033-10675124)
chr7 (184-258)||(24429741-24429815)
chr7 (193-254)||(41482419-41482480)
chr7 (408-491)||(8758393-8758476)
chr7 (207-258)||(39644955-39645006)
chr7 (527-572)||(25470643-25470688)
chr7 (209-242)||(45980471-45980504)
[»] chr4 (26 HSPs)
chr4 (371-579)||(2266631-2266838)
chr4 (371-579)||(9743654-9743864)
chr4 (371-579)||(17612401-17612608)
chr4 (366-578)||(1012357-1012560)
chr4 (386-579)||(2570559-2570752)
chr4 (425-579)||(2707993-2708146)
chr4 (371-536)||(54995616-54995781)
chr4 (193-258)||(2183346-2183411)
chr4 (190-259)||(45413766-45413835)
chr4 (499-578)||(49878869-49878948)
chr4 (177-242)||(26635244-26635309)
chr4 (376-491)||(33036064-33036179)
chr4 (408-491)||(37793487-37793570)
chr4 (172-254)||(34666464-34666546)
chr4 (431-491)||(5915657-5915717)
chr4 (531-579)||(54995020-54995068)
chr4 (191-258)||(36625533-36625600)
chr4 (373-491)||(17513008-17513126)
chr4 (371-445)||(20097395-20097469)
chr4 (527-572)||(5915051-5915096)
chr4 (447-491)||(5812709-5812753)
chr4 (207-246)||(29539206-29539245)
chr4 (195-258)||(55945653-55945716)
chr4 (369-491)||(22729775-22729896)
chr4 (185-258)||(33235785-33235858)
chr4 (372-445)||(51204650-51204723)
[»] chr6 (17 HSPs)
chr6 (381-578)||(34993907-34994104)
chr6 (370-579)||(11083929-11084135)
chr6 (370-579)||(26301695-26301906)
chr6 (426-558)||(30341145-30341277)
chr6 (371-579)||(19631815-19632021)
chr6 (472-579)||(4104183-4104290)
chr6 (486-579)||(6613767-6613860)
chr6 (177-232)||(16342697-16342752)
chr6 (425-491)||(4488444-4488510)
chr6 (431-491)||(25441088-25441148)
chr6 (195-254)||(8547436-8547495)
chr6 (527-572)||(4487837-4487882)
chr6 (527-572)||(25441709-25441754)
chr6 (202-254)||(8573796-8573848)
chr6 (267-314)||(14228002-14228048)
chr6 (527-569)||(18306665-18306707)
chr6 (197-258)||(129102-129163)
[»] scaffold0200 (1 HSPs)
scaffold0200 (371-579)||(24592-24799)
[»] scaffold0050 (1 HSPs)
scaffold0050 (371-579)||(5656-5863)
[»] scaffold0262 (2 HSPs)
scaffold0262 (408-488)||(12031-12111)
scaffold0262 (531-579)||(11447-11495)
[»] scaffold0312 (1 HSPs)
scaffold0312 (371-491)||(8993-9113)
[»] scaffold0001 (1 HSPs)
scaffold0001 (527-572)||(65992-66037)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 355 - 603
Target Start/End: Complemental strand, 6267503 - 6267255
Alignment:
Q  355 aaatggtcaaccgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttactta 454  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||||||||  ||||||||| | ||||||| ||||||||    
T  6267503 aaatggtcaaccgagtatttgtgtatttaagtcatgccacgtcaggttatttggtgtattatacatttatctataaggtgtgttattatatctttactta 6267404  T
Q  455 ttgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgt 554  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6267403 ttgcaattatgtccttgattaaatcaaaattaaacatagatttgcatttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgt 6267304  T
Q  555 aataaggtaaaatttagttttagagcaagacactaggtgacatgacatc 603  Q
    |||||| |||| |||||||||| ||||  ||||||||||||||||||||    
T  6267303 aataagataaagtttagttttaaagcagaacactaggtgacatgacatc 6267255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 3038472 - 3038679
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||| ||||||| | |||||||||||||||||  |||||||| ||||| | | |||||||||| ||||||||| |||||||||||||||| ||| | |    
T  3038472 atttgtctatttaatttatgtcacgtcagattatacagtgtattgcacatctgtccataaggtgtgtcattatatctttacttattgcaattgtgtccct 3038571  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||||||| ||||    
T  3038572 gattaaatcaaaattaaacttagattcccatttatgcactaagattgaaatt-cccttaatattttgtatgatgattgatttgtaataaggtaaagttta 3038670  T
Q  571 gttttagag 579  Q
    |||||||||    
T  3038671 gttttagag 3038679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 7290785 - 7290993
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||  ||||| ||||||||||||||||||| | | |||||| ||||||   |||||| ||||| ||||||| |||||||||||||||| | ||| |    
T  7290785 atttgtgcgtttaattcatgtcacgtcagattatatggcgtattagacattttcccataagatgtattattatatctttacttattgcaattgtattcct 7290884  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||| ||||    
T  7290885 gattaaatcaaaattagacatagattttcatttgtgcactaagattgaaattcctcttaatattttgtatgaggattgatttgtaataagataaagttta 7290984  T
Q  571 gttttagag 579  Q
    |||||||||    
T  7290985 gttttagag 7290993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 370 - 576
Target Start/End: Complemental strand, 4108895 - 4108692
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||||||||||||| | ||| |||||||  |||| | ||||||| |||||||   |||||||||| || |||||| |||||||||||||||| ||| |     
T  4108895 tatttgtgtatttaattaatgccacgtca--ttatatggtgtattgcacatttgcccataaggtgtgtcgttatatctttacttattgcaattgtgtccc 4108798  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||||  ||    
T  4108797 tgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaagactgttttgtaataagataaagctt 4108699  T
Q  570 agtttta 576  Q
    |||||||    
T  4108698 agtttta 4108692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 449 - 579
Target Start/End: Complemental strand, 23176690 - 23176561
Alignment:
Q  449 tacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactg 548  Q
    |||||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||     
T  23176690 tacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattcccctt-atattttgtatgaggacta 23176592  T
Q  549 atttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||||| ||||  ||||||||||||    
T  23176591 atttgtaataagataaagcttagttttagag 23176561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 392 - 579
Target Start/End: Complemental strand, 18756628 - 18756441
Alignment:
Q  392 cacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||||| ||||| | || |||| ||||||| |  ||||| ||| ||||||||| |||||||||||||||| ||| | ||||| ||| |||| ||| |||    
T  18756628 cacgtcaaattatatggtctattgcacatttgtctataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcat 18756529  T
Q  492 agattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    | |||| | ||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||||||    
T  18756528 atattcccctttgtgcactaagattttaattccccttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagag 18756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 579
Target Start/End: Original strand, 34685958 - 34686049
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||| |||| |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||    
T  34685958 acatatattctcatttgtgcactaagactgaaatttcccttaatattttgtatgaggactgatttgtaataaagtaaagtttagtcttagag 34686049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 579
Target Start/End: Complemental strand, 28220898 - 28220807
Alignment:
Q  487 aacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||| | ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||  ||||||||||||    
T  28220898 aacatagattctcttttgtacactaagattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagttttagag 28220807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 30651108 - 30651017
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||  |||||||||||||||||| ||||||| ||||||||||  ||||| |||||||||||||||||||||| |||| | ||||||    
T  30651108 acatagattttcatttgtgcactaagattaaaattcctcttaatatttagtatgatgactgatttgtaataaggtaaagtttaatcttagag 30651017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 1879208 - 1879088
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   ||||||| ||| |||||   |||||||  |||||| ||||||  ||||| || ||||| |||||||||||||| | ||| |||    
T  1879208 atttgtgtatttaatgaatgtcacatcaaattatagtgtgtattgtacatttgttcatattgtgtaccactatatttttacttattgcaaatgtgtcctt 1879109  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  1879108 gattaaatcaaaattaaacat 1879088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 31734435 - 31734371
Alignment:
Q  190 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    ||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||    
T  31734435 ttatgttatcatgttgttaatccaccaaaaactaaggataaaaataacaaagggtggatgggata 31734371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 39283824 - 39283758
Alignment:
Q  192 atgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||||| ||| ||||||||    
T  39283824 atgctatcaggttgctaacccaccaaaaattaaagataaaaaaaataaagggtgaatatgataggat 39283758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 22573259 - 22573186
Alignment:
Q  185 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||||||| |||||| ||||||||||||||||||| ||||||||| ||| ||||||| |  ||||||||||||    
T  22573259 tagttttatcctatcatgttgttaacccaccaaaaactaaggataagaattacaaaggttcaataggataggat 22573186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 1835367 - 1835247
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   ||||||| ||| |||||   |||||||  |||||| ||||||  ||||| || ||||| ||||||||| |||| | ||| |||    
T  1835367 atttgtgtatttaatgaatgtcacatcaaattatagtgtgtattgtacatttgttcatattgtgtaccactatatttttacttatcgcaaatgtgtcctt 1835268  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  1835267 gattaaatcaaaattaaacat 1835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 6267585 - 6267545
Alignment:
Q  317 taaggcgattgcagaaaggcgagctttgtggttgttggaaa 357  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  6267585 taaggcgattgcggaaaggcgagctttgtggttgttggaaa 6267545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 11066585 - 11066534
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||| |||||||||||||||||||||||||||||| ||  |||||||||||    
T  11066585 taacctaccaaaaattaaggataaaaataacaaaggctgagtaggataggat 11066534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 576
Target Start/End: Complemental strand, 1872738 - 1872689
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||| ||||||    
T  1872738 ttaatattttgtataaggactgatttataataaagtaaaatttggtttta 1872689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 9028625 - 9028698
Alignment:
Q  185 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||| ||| ||||||||||| ||||||| ||||||  |||||||| ||| ||||||| |  ||||||||||||    
T  9028625 tagttatatcctatcaggttgctaacccatcaaaaaccaaggataagaattacaaaggttcaataggataggat 9028698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 388 - 510
Target Start/End: Complemental strand, 30381079 - 30380955
Alignment:
Q  388 atgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaa--atcaaaatt 485  Q
    ||||||||||||||||| | || |||| || ||||| | ||||| ||| ||||||||| ||||||||||  |||| ||  | |||||||  || ||||||    
T  30381079 atgtcacgtcagattatatcgtatattgcatatttacttataagatgtgtcattatatctttacttattataattgtgcccctgattaaatataaaaatt 30380980  T
Q  486 aaacatagattcacatttgtgcact 510  Q
    || |||||||||  |||| ||||||    
T  30380979 aagcatagattcttatttatgcact 30380955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 38503855 - 38503904
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggatagg 256  Q
    |||||||||||||| |||  |||||||||||||||||||  |||||||||    
T  38503855 taacccaccaaaaactaaaaataaaaataacaaagggtgagtaggatagg 38503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 15964166 - 15964374
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   ||||||||||| ||||| ||||||||| ||||||| | |||||| ||| |||||||||| ||||| ||  ||||| ||| | |    
T  15964166 atttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtccataagatgtgtcattatatacttactgatatcaattgtgtccct 15964265  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15964266 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 15964365  T
Q  571 gttttagag 579  Q
    |||||||||    
T  15964366 gttttagag 15964374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 27118396 - 27118604
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||| |||||||||  |||| ||||||| ||||| |  |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||| ||| | |    
T  27118396 atttatgtatttaatccatgccacgtcatattatatgatgtattgcacatttgttcataaggtgtgtcattatatctttacttattgcaattgtgtccct 27118495  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||    
T  27118496 gattaaatcaaaattaaacatagattctcattcgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaataaggtaaagtata 27118595  T
Q  571 gttttagag 579  Q
    |||||||||    
T  27118596 gttttagag 27118604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 367 - 579
Target Start/End: Complemental strand, 13876905 - 13876693
Alignment:
Q  367 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgt 466  Q
    ||||||||||||||||||   ||| ||||||| || || | |||||||||||||||   ||||| |||| ||||||||| |||| ||||||||||| | |    
T  13876905 gagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacacatttgcccataaagtgtgtcattatatttttagttattgcaattgtat 13876806  T
Q  467 tcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaa 566  Q
     |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| || ||||||||||||||||||     
T  13876805 ccttgattaaatcaaaattaaacatagattcccatttgtgcactaatattgaaattccccttaatattttgtatgagtaccgatttgtaataaggtaaag 13876706  T
Q  567 tttagttttagag 579  Q
    |||||||||||||    
T  13876705 tttagttttagag 13876693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 371 - 576
Target Start/End: Original strand, 16127586 - 16127788
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||| ||||||||||||| |  |||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||  || | |    
T  16127586 atttgtgtatttaatccatgacacgtcagattatatgatgtattgcacatttactcataaggtgtgtcattatatgtttacttattgcaatt--gtccct 16127683  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    || ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  16127684 gaataaatcaaa-ttaaacatagattctcatttgtgcactaagattgagattccccttaatattttaaatgaggactggtttgtaataaggtaaagttta 16127782  T
Q  571 gtttta 576  Q
    ||||||    
T  16127783 gtttta 16127788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 10758282 - 10758074
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||| ||| ||||||||| | |||||||  ||||||    |||  |||| ||||||||| |||||||||||||||| ||| | |    
T  10758282 atttgtgtatttaattcatgccacatcagattatatggtgtattgaacatttgcctatagtgtgtgtcattatatttttacttattgcaattgtgtccct 10758183  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     ||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||  |||||||| | ||||||||    
T  10758182 aattaaatcaaaattaaacatatattctcatttgtgcactaagattgaaatttctcttaatattttatatgatgactgaagtgtaataaagcaaaattta 10758083  T
Q  571 gttttagag 579  Q
    |||||||||    
T  10758082 gttttagag 10758074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 390 - 572
Target Start/End: Original strand, 25943283 - 25943465
Alignment:
Q  390 gtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaac 489  Q
    ||||||||||||||| | ||||||| ||| |||  | |||| | ||  |||||||| |||| |||||| |||| |||| |||||||||||||||||||||    
T  25943283 gtcacgtcagattatatggtgtattgcacgtttgctgataatgcgtgccattatatctttatttattgtaattttgtttttgattaaatcaaaattaaac 25943382  T
Q  490 atagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||| |||||||||| ||||||||||||| | ||||||||||| || || ||||||||||||||||| |||||||||||    
T  25943383 atagattctcatttgtgcaataagattgaaatttctcttaatattttgtacgatgactgatttgtaataagataaaatttagt 25943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 437 - 576
Target Start/End: Complemental strand, 31805000 - 31804861
Alignment:
Q  437 tcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatatttt 536  Q
    ||||||||| ||||||| ||| |||| |||   |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  31805000 tcattatatctttacttcttgaaattgtgtcactgattaaatcaaaattaaacatagattctcatttatgcactaagattgaaatttcccttaatatttt 31804901  T
Q  537 atatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    ||||||| | || |||||||||||||||| |||| |||||    
T  31804900 atatgagaattggtttgtaataaggtaaagtttaatttta 31804861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 3120727 - 3120636
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||    
T  3120727 acatagattcacatttgtgcattaaaattgaaataccccttaatatattgtatgaggactgatttgtaataaggtaaagtttaatcttagag 3120636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 488 - 579
Target Start/End: Original strand, 47554938 - 47555029
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| | ||||||    
T  47554938 acatagattctcatttgtgcactaagatttaaattcctcttaatattttgtatgatgactgatttgtaataaggtaaagtttactcttagag 47555029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 371 - 505
Target Start/End: Original strand, 16132541 - 16132675
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  ||||  |||| |||||||   ||||||| |||||||   ||||| |||| ||||||||| |||||||||||||||| |||   |    
T  16132541 atttgtgtatttaatccatgcaacgtgagattatacggtgtattgcacatttgcacataatgtgtgtcattatatctttacttattgcaattgtgtctct 16132640  T
Q  471 gattaaatcaaaattaaacatagattcacatttgt 505  Q
    ||||||||||||||||||||||||||| |||||||    
T  16132641 gattaaatcaaaattaaacatagattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 6768381 - 6768312
Alignment:
Q  190 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 259  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6768381 ttatgctatcaggttcctaacccaccaaaaattaaggataaaaataacaaaggttggatagaataggata 6768312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 26793882 - 26793808
Alignment:
Q  184 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| ||  |||||||||||    
T  26793882 atagttttatgctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggat 26793808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 408 - 491
Target Start/End: Complemental strand, 21263990 - 21263907
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||  |||||| |||||| |||||| || ||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  21263990 gtgtattgtacatttgttcatatggtgtaccactatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 9383222 - 9383287
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  9383222 tttatgctatcaggttgctaacccatcaaaaattaaggatgaaaataacaaagggtgagtaggata 9383287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 510 - 579
Target Start/End: Original strand, 16135528 - 16135597
Alignment:
Q  510 taagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||||||| | |||||||||| |||||| |||||||||||||| |||||| |||||||||||||    
T  16135528 taagattgaaattctcattaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagag 16135597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 421459 - 421579
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   |||||| |||| |||||  ||| |||| |||||||| | ||| | |||  |||||||| |||||| ||||||||| ||| |||    
T  421459 atttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttactaattgcaattgtgtcctt 421558  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  421559 gattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 42471963 - 42472020
Alignment:
Q  184 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 241  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  42471963 atagctttatgctatcaggttgttaacccaccaaaaactaaggattaaaattacaaag 42472020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 50004909 - 50004960
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  50004909 taacccaccaaaaactaaggataaaaataacaaagggtgattaggataggat 50004960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 19806758 - 19806820
Alignment:
Q  196 tatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||||||||||||||||||||||| ||||||| | || ||||||| ||| ||||||||||||    
T  19806758 tatcaggttgttaacccaccaaaaactaaggattagaaaaacaaagagtgaataggataggat 19806820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 486 - 536
Target Start/End: Original strand, 43579462 - 43579512
Alignment:
Q  486 aaacatagattcacatttgtgcactaagattgaaattccccttaatatttt 536  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  43579462 aaacatagattcttatttgtgcactaagattgaaattctccttaatatttt 43579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 578
Target Start/End: Complemental strand, 3120333 - 3120249
Alignment:
Q  494 attcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttaga 578  Q
    |||| |||||||||||||||||| |||| || |||||||  || |||| ||||||||||||||||| ||||| || ||| |||||    
T  3120333 attcgcatttgtgcactaagattaaaatacctcttaataaattgtatgtggactgatttgtaataaagtaaagttaagtcttaga 3120249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 49236292 - 49236219
Alignment:
Q  184 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatagga 257  Q
    ||||||||| | |||||||||| ||||||||||||||  |||||||  ||||| ||||| ||| ||||||||||    
T  49236292 atagttttacgatatcaggttgctaacccaccaaaaaccaaggatatgaataagaaaggttgggtaggatagga 49236219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 38332376 - 38332423
Alignment:
Q  195 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 242  Q
    ||||||| ||| |||||| ||||||||||| |||||||||||||||||    
T  38332376 ctatcagattgctaaccctccaaaaattaaagataaaaataacaaagg 38332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 579
Target Start/End: Original strand, 5500591 - 5500628
Alignment:
Q  542 aggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  5500591 aggagtgatttataataaggtaaaatttagttttagag 5500628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 41643938 - 41644147
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| |||||||  ||||||||||| ||||||||| |||||||||||||||| | | | |    
T  41643938 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgcaattgtatccct 41644037  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaata-ttttatatgaggactgatttgtaataaggtaaaattt 569  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |||    
T  41644038 gattaaatcaaaattaaacatagtttctcatttgtgcactaagattgaaattccccttaatatttttgtatgaggactgatttgtaataaggtagagttt 41644137  T
Q  570 agttttagag 579  Q
    ||||||||||    
T  41644138 agttttagag 41644147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 370 - 579
Target Start/End: Complemental strand, 18059345 - 18059136
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||||||||||||| |||||||| |||||||||| | ||||||| || |||||| ||||| |||| | ||||||| |||||||||||||||| ||| ||    
T  18059345 tatttgtgtatttaattcatgtcatgtcagattatatggtgtattgcatatttatccataatgtgtgttattatatctttacttattgcaattgtgtcct 18059246  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||| || ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||    
T  18059245 tgattagattaaaattaaatatagattctcgtttgtgcactaagattgaaattccccttaatattttgtatgatgactgatttgtaacaaggtaaagttt 18059146  T
Q  570 agttttagag 579  Q
    ||||||||||    
T  18059145 agttttagag 18059136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 370 - 579
Target Start/End: Original strand, 15650913 - 15651122
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    |||||||||||||||  ||| |||||| ||||||| | ||||||| |||||||   |||||||||| ||||||||| |||||||||||||||| |||||     
T  15650913 tatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgttcc 15651012  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||| ||||| |||    
T  15651013 tgattaaatcaaaattaaacatagaatctcatttgtgcactaaaattgaaattctcctaaatattttgtatgaggactgatttgtaataaagtaaagttt 15651112  T
Q  570 agttttagag 579  Q
    | ||||||||    
T  15651113 aattttagag 15651122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 6177841 - 6178048
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| | |||||   |||||||| | |||||||||||||||||||| ||||| ||| | |    
T  6177841 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattccaattgtgtccct 6177940  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||| ||||    
T  6177941 gattaaatcaaaat-aaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagttta 6178039  T
Q  571 gttttagag 579  Q
    ||| |||||    
T  6178040 gttctagag 6178048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 387 - 579
Target Start/End: Complemental strand, 27138987 - 27138795
Alignment:
Q  387 catgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaatta 486  Q
    ||||||||||||||||||   ||||||| || ||||   ||||| |||| ||||||||| |||||   |||||||| ||| | |||||||||||||||||    
T  27138987 catgtcacgtcagattatacggtgtattgcatatttgcccataaagtgtgtcattatatctttacgggttgcaattgtgtccctgattaaatcaaaatta 27138888  T
Q  487 aacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||    
T  27138887 aacatagattcccatttgtgcactaagattgaaattcaccttaatattttgcatgaggacttatttgtaataaggtaaaatttaattttagag 27138795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 18947580 - 18947384
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||||||||||||||||| | |||||||  ||||| || |||||| ||| ||||||||            |||||| ||| | |    
T  18947580 atttgtgtatttaatccatgtcacgtcagattatatggtgtattgtacattcatccataagatgtgtcattata------------gcaattgtgtccct 18947493  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18947492 gattaaatcaaaagtaaacatagattctcatttgtgcattaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagttta 18947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 371 - 576
Target Start/End: Original strand, 19073424 - 19073623
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||||||||||||||||| | ||||||| ||||||| |  ||||||||| ||||||||||||||||||||| |||| ||| | |    
T  19073424 atttgtgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtctataaggtgtgtcattatatatttacttattgaaattgtgtccct 19073523  T
Q  471 gattaaatcaaaattaaacatagattcaca-tttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||||| |||||||||||||| || ||| |||||      ||||||| || ||||||||||||| |||||||||||||||||||||||||||||    
T  19073524 gattaaatcaaagttaaacatagattctcattttttgcac------tgaaatt-cctttaatattttatacgaggactgatttgtaataaggtaaaattt 19073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 370 - 548
Target Start/End: Complemental strand, 34441904 - 34441729
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||||||||||||| |||||||||||||  |||| | ||||||| |||||||   |||||| ||| || |||||| |||||||||||||||| ||| |     
T  34441904 tatttgtgtatttaattcatgtcacgtca--ttatatggtgtattgcacatttgcccataagatgtgtcgttatatctttacttattgcaattgtgtccc 34441807  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactg 548  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  34441806 tgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaattcccctt-atattttgtatgaggactg 34441729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 18779383 - 18779181
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttat--tcataaggtgtatcattatatatttacttattgcaattatgttc 468  Q
    |||||||||||||| ||||||||| ||||||||| | || |||| |||||||    | |||| |||| | ||| ||| |||||||||||||||| |||||    
T  18779383 atttgtgtatttaattcatgtcacatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttattgcaattgtgttc 18779284  T
Q  469 ttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatt 568  Q
     ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||        ||||||||| |||||||||||||||||||||| ||    
T  18779283 ctgattaaatcaaagttaaacatagattctcatttgtgcactaagattgaaatttcc--------tttatatgacgactgatttgtaataaggtaaagtt 18779192  T
Q  569 tagttttagag 579  Q
    |||||||||||    
T  18779191 tagttttagag 18779181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 370 - 579
Target Start/End: Original strand, 41713229 - 41713435
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||| ||||||||| |||||||||||||  |||| | |||| ||||||||||   |||||| ||| ||||||||| | |||||||| ||||| | | |     
T  41713229 tatttatgtatttaattcatgtcacgtca--ttatatggtgtgttacacatttgcccataagatgtgtcattatatgtatacttattacaattgtttccc 41713326  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    | |||||||||||||||||||||||||| || ||||||||||| | ||||||||||||| ||||||| | ||||||||||||||||||||| ||||| ||    
T  41713327 taattaaatcaaaattaaacatagattctcacttgtgcactaaaaatgaaattcccctt-atattttgtgtgaggactgatttgtaataagataaaactt 41713425  T
Q  570 agttttagag 579  Q
    ||||||||||    
T  41713426 agttttagag 41713435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 437 - 579
Target Start/End: Complemental strand, 39788526 - 39788384
Alignment:
Q  437 tcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatatttt 536  Q
    |||||||||  ||||||| |||||||||||   || |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||     
T  39788526 tcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgtgcactaaaattgaaattccccttaatatttc 39788427  T
Q  537 atatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
     |||||| ||||||||||||||||||||| |||| ||||||||    
T  39788426 gtatgagaactgatttgtaataaggtaaagtttatttttagag 39788384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 437 - 579
Target Start/End: Complemental strand, 38250050 - 38249912
Alignment:
Q  437 tcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatatttt 536  Q
    ||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||  |||||  ||||| || |||||||||||||||||||||||||| |    
T  38250050 tcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaatca--gattccaatttgcgctctaagattgaaattccccttaatattgt 38249953  T
Q  537 atatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||  |||||||||||||||| ||||||||||||||||||||||    
T  38249952 at--gaggactgatttgtaacaaggtaaaatttagttttagag 38249912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 370 - 576
Target Start/End: Original strand, 42005454 - 42005657
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||||| |||||||  ||||||||||||  |||| | ||||||| ||||||    |||||||||| |||||| || ||||||||||| |||| ||| |     
T  42005454 tatttgtttatttaatccatgtcacgtca--ttatatggtgtattgcacattgcc-cataaggtgtgtcattacatctttacttattgtaattgtgtccc 42005550  T
Q  470 -tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatt 568  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||| ||||||  ||||||||||||||  ||||| |    
T  42005551 ctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattttcctt-atattttgtatgagagctgatttgtaataaaataaaact 42005649  T
Q  569 tagtttta 576  Q
    || |||||    
T  42005650 taatttta 42005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 17244935 - 17244844
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  17244935 acatagattctcatttgtgcactaagattgaaattttccttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagag 17244844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 491 - 579
Target Start/End: Original strand, 19093640 - 19093728
Alignment:
Q  491 tagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||| |||||||||| |||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  19093640 tagattcccatttgtgcagtaagattgaaattctccttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagag 19093728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 40626589 - 40626520
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  40626589 tttatgctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggat 40626520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 6457717 - 6457653
Alignment:
Q  190 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6457717 ttatgctattaggtaattaacccaccaaaaattaaggataaaaataacaaagggtggataagata 6457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 420 - 491
Target Start/End: Original strand, 7553469 - 7553540
Alignment:
Q  420 tttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||||| ||||||||| ||||| |||||||||||||||| |||  |||||||||||||||||||||||    
T  7553469 tttattcatatggtgtatcactatatttttacttattgcaattgtgtcattgattaaatcaaaattaaacat 7553540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 488 - 565
Target Start/End: Complemental strand, 18514597 - 18514520
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaa 565  Q
    |||||||||| |||||||||||||||||||||||| || |||||||||| ||||| || |||||| |||||| |||||    
T  18514597 acatagattctcatttgtgcactaagattgaaatttccattaatattttgtatgatgattgatttataataaagtaaa 18514520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 576
Target Start/End: Complemental strand, 34441728 - 34441657
Alignment:
Q  504 gtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||  |||||||||    
T  34441728 gtgcactaaaattgaaattcccctta-tattttgtatgaggactgatttgtaataagataaagcttagtttta 34441657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 1529661 - 1529726
Alignment:
Q  177 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 242  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||| || ||||||||    
T  1529661 gcgcttaatagttttatgctaccagattgctaacccaccaaaaatcaaggataagaacaacaaagg 1529726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 32651957 - 32652023
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||| |||||| || ||||| ||||||| |||||||| ||| ||||||||||||||||||||||||    
T  32651957 tcatatggtgtaccactatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 32652023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 40912516 - 40912471
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||    
T  40912516 ttaatattttgtatgaggactgatttgtaataaagtaaaatttagt 40912471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 376 - 491
Target Start/End: Original strand, 30844918 - 30845033
Alignment:
Q  376 tgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgatta 475  Q
    |||||||||  |||||||||||||||||| |  | |||| ||||||| | |||||| ||| |||||| || ||||||||||||| ||  ||   | ||||    
T  30844918 tgtatttaatccatgtcacgtcagattatatgatatattgcacatttgtccataagatgtgtcattaaatctttacttattgcatttgagtctctaatta 30845017  T
Q  476 aatcaaaattaaacat 491  Q
    ||||||||||||||||    
T  30845018 aatcaaaattaaacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 570
Target Start/End: Original strand, 32652621 - 32652664
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||| |||||||||||||||||||||| ||||||||||    
T  32652621 ttaatattttgtatgaggactgatttgtaataaagtaaaattta 32652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 40913227 - 40913164
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaa 488  Q
    ||||| |||||| || ||||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  40913227 tcatatggtgtaccactatatttttatttattgcaattgtgtccttgattaaatcaaaattaaa 40913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 18665262 - 18665224
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtg 245  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  18665262 taacccaccaaaaattaaggataaaattaacaaagggtg 18665224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 6348832 - 6348905
Alignment:
Q  417 acatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaaca 490  Q
    |||||| |||||| |||||| |||||||  ||||||||||||||||  || ||| |||||||||||||| ||||    
T  6348832 acatttgttcatatggtgtaccattatagttttacttattgcaattgggtccttaattaaatcaaaattcaaca 6348905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 40054458 - 40054527
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||| |||| |||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  40054458 tttatcctattaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 40054527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 376 - 484
Target Start/End: Original strand, 58097 - 58204
Alignment:
Q  376 tgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgatta 475  Q
    ||||||||| ||||||||  ||| ||||| | ||||||| ||||||| |||||| |||||  ||  |||| |||||||||||||||| || || ||||||    
T  58097 tgtatttaattcatgtcagatcaaattatatggtgtattgcacatttgttcatacggtgtgccacaatatttttacttattgcaattgtg-tcctgatta 58195  T
Q  476 aatcaaaat 484  Q
    ||| |||||    
T  58196 aattaaaat 58204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 3044871 - 3044918
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataa 236  Q
    |||| ||||||| |||| ||||| ||||||||||||||||||||||||    
T  3044871 tttaagctatcatgttgctaacctaccaaaaattaaggataaaaataa 3044918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 39111666 - 39111703
Alignment:
Q  217 aaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||||||||||||||||||||||||||||  |||||||    
T  39111666 aaaattaaggataaaaataacaaagggtgtgtaggata 39111703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 43445387 - 43445342
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| ||| |||||| ||||||||||| ||||||||||||    
T  43445387 ttaatattttgtataaggactaatttgtaataaagtaaaatttagt 43445342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 8e-66; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 376 - 579
Target Start/End: Original strand, 22616564 - 22616767
Alignment:
Q  376 tgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgatta 475  Q
    |||||||||  |||||||||||| ||||| | |||||||  ||||||   |||||||||| ||||||||| |||||||||||||||| ||| | ||||||    
T  22616564 tgtatttaatccatgtcacgtcatattatatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtccctgatta 22616663  T
Q  476 aatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagtttt 575  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  22616664 aatcaaaattaaacatagattctcatttgtgcactaaaattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagtttagtttt 22616763  T
Q  576 agag 579  Q
    ||||    
T  22616764 agag 22616767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 371 - 576
Target Start/End: Complemental strand, 41417561 - 41417356
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| | || ||| |||||||||| | ||||||| || ||||  ||||||||||| ||||| ||| |||||||||||||||| ||| |      
T  41417561 atttgtgtatttaatttatatcatgtcagattatatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgcaattgtgtccca 41417462  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  41417461 gattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttattattttgtatgatgactgatttgtaataaggtaaaattta 41417362  T
Q  571 gtttta 576  Q
    ||||||    
T  41417361 gtttta 41417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 36055856 - 36055649
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||| |||||| ||||||| | ||||||||  | ||||||| |||||||  ||||||||||| ||||||||| |||||||||| ||||| ||| |      
T  36055856 atttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattacaattgtgtcccc 36055757  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || |||||| | ||||||||||||||||||| ||||    
T  36055756 gattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-cccttaatatcttgtatgagaattgatttgtaataaggtaaagttta 36055658  T
Q  571 gttttagag 579  Q
    |||||||||    
T  36055657 gttttagag 36055649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 31878449 - 31878658
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| ||||||| |  ||||||||| ||||||||| |||||||||  ||||| ||| | |    
T  31878449 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgtctataaggtgtgtcattatatctttacttatgacaattgtgtccct 31878548  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaata-ttttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||  ||||||| |||| |||| | |||||| |||||||||||||| |||    
T  31878549 gattaaatcaaaattaaacatagattcctatttgtgcactaagattgaaattcttcttaatatttttgtatgggaactgatctgtaataaggtaaagttt 31878648  T
Q  570 agttttagag 579  Q
    | ||||||||    
T  31878649 aattttagag 31878658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 10237480 - 10237687
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| |||| |||||||||||||| | ||||||| | ||||| | |||||||| | |||||||||||||||||||| ||||| ||| |      
T  10237480 atttgtgtatttaattcatttcacgtcagattatatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattccaattgtgtccca 10237579  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||| || || |||| ||||||||||||||||| ||||    
T  10237580 gattaaatcaaaat-aaacatagattctcatttgtacactaagattgaaatttcccttaatattttgtacgatgactaatttgtaataaggtaaagttta 10237678  T
Q  571 gttttagag 579  Q
    ||| |||||    
T  10237679 gttctagag 10237687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 408 - 576
Target Start/End: Original strand, 33163618 - 33163786
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgc 507  Q
    ||||||| ||||||||| ||||||||||  |||||||| |||||||||||||||| ||| | ||||||||||||||||||||||| |||| ||| |||||    
T  33163618 gtgtattgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacataaattctcatgtgtgc 33163717  T
Q  508 actaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    | |||||||||||||  |||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  33163718 attaagattgaaattttccttaatattttgtatgaagactgatttgtaataaggtaaagtttagtttta 33163786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 375 - 578
Target Start/End: Original strand, 21320821 - 21321024
Alignment:
Q  375 gtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgatt 474  Q
    |||||||||| | ||| ||| ||||||||| | ||||||| || ||||    ||||| ||||||||||||| |||||||||| ||||| |||   |||||    
T  21320821 gtgtatttaactaatgccacatcagattatatggtgtattgcatatttgcatataagatgtatcattatatctttacttattacaattgtgtctctgatt 21320920  T
Q  475 aaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttt 574  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||| | ||||||||||| |||||||| |||||||||  |||||||| ||||||||    
T  21320921 aaatcaaaattaaacatagattctcatttgagcactaaaattgaaatttcgcttaatattttgtatgaggattgatttgtaggaaggtaaagtttagttt 21321020  T
Q  575 taga 578  Q
    ||||    
T  21321021 taga 21321024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 386 - 579
Target Start/End: Original strand, 27579109 - 27579300
Alignment:
Q  386 tcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaatt 485  Q
    ||||||||||||||||||| | ||||||| || ||||    |||| |||  ||||||||| |||| ||||||||||| |||   | |||||||||||| |    
T  27579109 tcatgtcacgtcagattatatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaaagt 27579208  T
Q  486 aaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||  ||  ||||||||||||||||||||||||| |||||||||||| | | |||| ||||||||||||||||||| |||||||||||||    
T  27579209 aaacata--tttccatttgtgcactaagattgaaattctccttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagag 27579300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 367 - 491
Target Start/End: Original strand, 25653646 - 25653770
Alignment:
Q  367 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgt 466  Q
    |||||||||||||||||| |||| |||||||||||| | | ||||||| |||||||  ||||||||||| ||||||||| |||||||||||||| ||| |    
T  25653646 gagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaactattt 25653745  T
Q  467 tcttgattaaatcaaaattaaacat 491  Q
     | ||||||||||||||||||||||    
T  25653746 ccctgattaaatcaaaattaaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 10053291 - 10053406
Alignment:
Q  373 ttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttga 472  Q
    ||||||||||||  ||||| ||||| |||||| | ||||||| |||||||  ||||||||||| ||||||||| ||||||||||||||||  || | |||    
T  10053291 ttgtgtatttaatccatgttacgtcggattatatcgtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctga 10053390  T
Q  473 ttaaatcaaaattaaa 488  Q
    ||||||||||||||||    
T  10053391 ttaaatcaaaattaaa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 29766667 - 29766576
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||| ||||| |||||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||| ||||||    
T  29766667 acatggattcccatttgtgcattaagatttaaattccccttaatattttgtatgagaactaatttgtaataaggtaaagtttagtcttagag 29766576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 398 - 491
Target Start/End: Complemental strand, 12081222 - 12081129
Alignment:
Q  398 agattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||||| | |||||||||||||||  | ||||||||| || |||||| ||||||||||||||||| || | ||||||||||||||||||||||    
T  12081222 agattatatggtgtattacacatttgcttataaggtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 425 - 491
Target Start/End: Original strand, 13887361 - 13887427
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||| |||||| |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  13887361 tcatatggtgtaccattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 13109811 - 13109764
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13109811 taacccaccaaaaactaaggataaaaataacaaagggtggataggata 13109764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 21266130 - 21266205
Alignment:
Q  416 cacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||  ||   ||||||||||||| ||||||||    
T  21266130 cacatttgctcataaggtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 34731389 - 34731320
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | |||||||||||||    
T  34731389 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggataggat 34731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 529 - 572
Target Start/End: Complemental strand, 12080558 - 12080515
Alignment:
Q  529 aatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  12080558 aatattttgtatgaggactgatttgtaataaggtaaagtttagt 12080515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 13039817 - 13039770
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||||||||||||| ||||||||||||||| ||||| |||||||||||    
T  13039817 taacccaccaaaaactaaggataaaaataataaaggatggataggata 13039770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 26411362 - 26411481
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||| |||||||||  |||||||||||| ||||| | |||||||  ||||||  |||||  || |  || |||||||||||||||||||||| | | |     
T  26411362 tatttatgtatttaatacatgtcacgtcaaattatatggtgtattgtacatttgctcatacagtatgccactatatatttacttattgcaattgtatccc 26411461  T
Q  470 tgattaaatcaaaattaaac 489  Q
    | ||||||||||||||||||    
T  26411462 taattaaatcaaaattaaac 26411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 8777341 - 8777275
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||| |||||| || ||||| |||||||||||||||| ||| |||  |||||||||||||||||||    
T  8777341 tcatatggtgtaccactatatttttacttattgcaattgtgtccttcgttaaatcaaaattaaacat 8777275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 8763022 - 8762977
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  8763022 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagt 8762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 13888329 - 13888374
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||||    
T  13888329 ttaatattttgtatgaggactgatttataataaagtaaaatttagt 13888374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 579
Target Start/End: Original strand, 25654566 - 25654623
Alignment:
Q  522 tccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||| ||| ||  | |||||||||||||||||||||| |||||||||||||    
T  25654566 tccccttaatagtttgtacaaagactgatttgtaataaggtaaagtttagttttagag 25654623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 491
Target Start/End: Complemental strand, 25521745 - 25521705
Alignment:
Q  451 cttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  25521745 cttattgcaattgtgtccttgattaaatcaaaattaaacat 25521705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 33752534 - 33752482
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||| |||||||| |||||| |||||||||||| |||||| ||||||    
T  33752534 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagag 33752482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 33753030 - 33752910
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   ||||||| |||||||||   || |||| ||||||| | || ||||||| | ||| ||| |||||||||||| ||| ||| | |    
T  33753030 atttgtgtatttaatcaatgtcacttcagattatagggtttattgcacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccct 33752931  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||| ||| ||||||||    
T  33752930 gattaaataaaatttaaacat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 527 - 579
Target Start/End: Complemental strand, 33848173 - 33848121
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||| |||||||| |||||| |||||||||||| |||||| ||||||    
T  33848173 ttaatattttgtatgaggattgatttttaataaggtaaagtttagtcttagag 33848121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 13380602 - 13380685
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||||| ||||||||  |||||  | | ||||||||| |||| ||||||||||| | | | ||||||||||||||||||||||    
T  13380602 gtgtattgcacatttacccataaaatatgtcattatatctttatttattgcaattgtatccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 25513895 - 25513954
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaat 484  Q
    ||||| |||||| || ||||| |||||||||||||||| | | |||||||||||||||||    
T  25513895 tcatatggtgtaccactatatttttacttattgcaattgtctccttgattaaatcaaaat 25513954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 15416354 - 15416395
Alignment:
Q  267 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaa 309  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  15416354 gatagttt-tatcatatcatgtcttcctatcatgtgcaccaaa 15416395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 16290716 - 16290753
Alignment:
Q  196 tatcaggttgttaacccaccaaaaattaaggataaaaa 233  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  16290716 tatcaagttgctaacccaccaaaaattaaggataaaaa 16290753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 26412052 - 26412097
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    ||||||||||||| ||||||||||||| |||||| || ||||||||    
T  26412052 ttaatattttatacgaggactgatttgcaataagatataatttagt 26412097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 8e-66; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 371 - 578
Target Start/End: Original strand, 44880857 - 44881063
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||| |||||||||  ||||||||||||||| || | ||||||| |||||||  |||||||| || ||||||||| |||||||||| ||||| ||| | |    
T  44880857 atttatgtatttaatccatgtcacgtcagataatatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattacaattgtgtccct 44880955  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  44880956 gattaaatcaaaattaaacatagattcacatttgtgcactaggattgaaattccccttaatattttatatgaggattgatttgtaataaggtaaagttta 44881055  T
Q  571 gttttaga 578  Q
    ||||||||    
T  44881056 gttttaga 44881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 19606896 - 19606688
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||| ||||||||||||||| | |||||||  |||||| | |||||||||| ||||||||| ||||||| |||||||  ||| | |    
T  19606896 atttgtgtatttaattcaggtcacgtcagattatatggtgtattgaacatttttccataaggtgtgtcattatatctttacttgttgcaatcgtgtccct 19606797  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  19606796 tattaaatcaaaattaaacatagatttccatttgtgcaccaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagttta 19606697  T
Q  571 gttttagag 579  Q
    |||||||||    
T  19606696 gttttagag 19606688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 32180729 - 32180525
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| | |||||||||||||||||  |  ||||| ||||||| |   |||||||| ||||||||| |||||||||||||||| ||| | |    
T  32180729 atttgtgtatttaatttatgtcacgtcagattat--acggtattgcacatttgtc--taaggtgtgtcattatatctttacttattgcaattgtgtccct 32180634  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  32180633 gattaaatcaaaattaaacatagatttccatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaataaggtaaagttta 32180534  T
Q  571 gttttagag 579  Q
    |||||||||    
T  32180533 gttttagag 32180525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 371 - 578
Target Start/End: Complemental strand, 38392610 - 38392403
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  ||||||| | |||||||| |  |||||| |||||||   ||||| |||| |||||||||||||||||||||||||| ||| | |    
T  38392610 atttgtgtatttaatccatgtcatgacagattatatgatgtattgcacatttgcccataatgtgtgtcattatatatttacttattgcaattgtgtccct 38392511  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||| || || |||||||||||||||| ||||||||||    
T  38392510 gattaaatcaaaattaaacatagattttcatttatgcactaagattgaaatttcccttaatattttgtaagatgactgatttgtaataatgtaaaattta 38392411  T
Q  571 gttttaga 578  Q
    ||||||||    
T  38392410 gttttaga 38392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 371 - 574
Target Start/End: Complemental strand, 49359610 - 49359407
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||| ||||||| ||||| |  |||||| |||||||  ||||||||||| ||||||||| |||||||| ||||||| ||| | |    
T  49359610 atttgtgtatttaatccatgacacgtcatattatatgatgtattgcacatttgctcataaggtgtgtcattatatctttacttaatgcaattgtgtccct 49359511  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||    
T  49359510 gattaaatcaaaattaaacatagatttctatttgtgcactaagattgaaattccctttaatattttgtatgaggactgatttataataaggtaaagttta 49359411  T
Q  571 gttt 574  Q
    ||||    
T  49359410 gttt 49359407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 371 - 556
Target Start/End: Complemental strand, 7568701 - 7568516
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||||||||||||||| |   ||||| |||||||   ||||| |||| ||||||||| |||||||||| ||||| |||   |    
T  7568701 atttgtgtatttaattcatgtcacgtcagattatatgcagtattgcacatttgcacataaagtgtgtcattatatctttacttattacaattgtgtctct 7568602  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaa 556  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7568601 gattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtatgaggactgatttgtaa 7568516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 40640616 - 40640405
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgc---aattatgtt 467  Q
    ||||||||||||||  |||||||||||| ||||| | ||||||| |||||||   |||||| ||| ||||||||| ||||||||||||   |||| |||     
T  40640616 atttgtgtatttaatccatgtcacgtcatattatatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgctgcaattgtgtc 40640517  T
Q  468 cttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaat 567  Q
    ||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||  |||| |    
T  40640516 cttgattaaatcaaaattaaagatatattctcatttgtgcactaaaattgaaattctccttaatattttgtatgaggactgatttgtaataaaataaagt 40640417  T
Q  568 ttagttttagag 579  Q
    ||||||||||||    
T  40640416 ttagttttagag 40640405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 426 - 576
Target Start/End: Complemental strand, 45879414 - 45879264
Alignment:
Q  426 cataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccc 525  Q
    |||||||||| || |||||| ||||||||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  45879414 cataaggtgtgtcgttatatctttacttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcactaacattgaaattccc 45879315  T
Q  526 cttaatattttatatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    ||| ||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  45879314 ctttatattttgtatgaggactgatttgtaataaggtaaagtttagcttta 45879264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 447 - 579
Target Start/End: Original strand, 26000674 - 26000806
Alignment:
Q  447 tttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggac 546  Q
    |||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| |||||| ||    
T  26000674 tttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattctcatttgtgcactaaaattgaaatttcccttaatattttgtatgagtac 26000773  T
Q  547 tgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||||| ||||| |||||||||||||    
T  26000774 tgatttgtaataaagtaaagtttagttttagag 26000806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 426 - 579
Target Start/End: Complemental strand, 7758350 - 7758198
Alignment:
Q  426 cataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccc 525  Q
    |||||||||  ||||||||| |||||||||||||||| ||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7758350 cataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccc 7758251  T
Q  526 cttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||| ||||||| ||||| ||||||||||||| ||| ||||  ||||||||||||    
T  7758250 ctt-atattttgtatgaagactgatttgtaaaaagataaagcttagttttagag 7758198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 447 - 579
Target Start/End: Complemental strand, 47930573 - 47930441
Alignment:
Q  447 tttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggac 546  Q
    |||||||||||||||| ||| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||    
T  47930573 tttacttattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatattttgtataatgac 47930474  T
Q  547 tgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||||| |||||  ||||||||||||    
T  47930473 tgatttgtaataaagtaaagcttagttttagag 47930441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 426 - 579
Target Start/End: Original strand, 51878235 - 51878387
Alignment:
Q  426 cataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccc 525  Q
    ||||| |||| | |||||||  ||||||||||||||| |||    |||||||| |||||||||||||||||| ||||| |||||||||||||||||| |     
T  51878235 cataatgtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacatagattctcatttatgcactaagattgaaatt-ct 51878333  T
Q  526 cttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||| |||||| ||||| ||||||||||||||| |||| ||||||||    
T  51878334 cttaatattttgtatgagtactgaattgtaataaggtaaagtttaattttagag 51878387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 53811958 - 53811867
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaatt 462  Q
    |||| |||||||||  |||||||||||||||||| | ||||||| ||||||| | |||||||||| ||||||||| |||||||| |||||||    
T  53811958 atttatgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaatt 53811867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 42204412 - 42204530
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   ||||||| || |||||| | ||||||| || ||||| ||||||||||| ||| ||||| ||||||||||||||||  | || |    
T  42204412 atttgtgtatttaatctatgtcacatcggattatatggtgtattgcatatttactcataaggtgtgtca-tatatctttacttattgcaattgag-tcct 42204509  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  42204510 gattaaatcaaaattaaacat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 45850748 - 45850824
Alignment:
Q  187 gttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggatataaa 263  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||| || |||| ||| ||||    
T  45850748 gttttatgctatcaggttgctaacccaccaaaaatcaaggataagaataacaaaggctggctaagataagatttaaa 45850824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 527 - 579
Target Start/End: Original strand, 11019700 - 11019752
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||    
T  11019700 ttaatattttatacgaggactgatttgtaataagataaaatttagtcttagag 11019752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 367 - 463
Target Start/End: Original strand, 4556603 - 4556703
Alignment:
Q  367 gagtatttgtgtatttaagt----catgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaatt 462  Q
    |||||||||||||||||| |    |||||||||||||||||| | | ||||| |||||||  |||||| |||| ||||||||| |||||||||| |||||    
T  4556603 gagtatttgtgtatttaattaattcatgtcacgtcagattatatggcgtattgcacatttgctcataatgtgtgtcattatatctttacttattacaatt 4556702  T
Q  463 a 463  Q
    |    
T  4556703 a 4556703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 560
Target Start/End: Complemental strand, 31706831 - 31706760
Alignment:
Q  489 catagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataag 560  Q
    ||||||||| ||||||||||||| |||||||| |||| |||||||||| |||| ||| |||||| |||||||    
T  31706831 catagattctcatttgtgcactacgattgaaactccctttaatattttgtatgtggattgatttataataag 31706760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 48155141 - 48155075
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||| |||||| || ||||| ||||||| |||||||| ||| ||||||||||||||||||||||||    
T  48155141 tcatatggtgtaccactatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 48155075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 491
Target Start/End: Original strand, 47870312 - 47870377
Alignment:
Q  426 cataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||||| ||||||||| ||||| ||||||||||  || ||||||||||||||||| ||||||    
T  47870312 cataaggtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaatcaaacat 47870377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 20524966 - 20524907
Alignment:
Q  195 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||||| |||||||||||||||||||| |||||| ||||| ||||||| | |||||||||    
T  20524966 ctatcaagttgttaacccaccaaaaatcaaggattaaaattacaaaggatagataggata 20524907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 32491023 - 32490957
Alignment:
Q  189 tttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggatag 255  Q
    ||||| ||||||||||| ||||||| | |||| ||||||| ||||||||||||| | ||||||||||    
T  32491023 tttatcctatcaggttgctaacccagctaaaactaaggattaaaataacaaaggattgataggatag 32490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 576
Target Start/End: Original strand, 36689674 - 36689723
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagtttta 576  Q
    |||||||||| |||||||||| ||||||||||| ||||| ||||||||||    
T  36689674 ttaatattttgtatgaggacttatttgtaataaagtaaagtttagtttta 36689723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 48154513 - 48154468
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||    
T  48154513 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagt 48154468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 38457844 - 38457788
Alignment:
Q  202 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||| |||||||||||| | ||||||||||| ||||||| |||| ||||||||||||    
T  38457844 gttgctaacccaccaaatactaaggataaaagtaacaaaaggtgaataggataggat 38457788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 54606772 - 54606892
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   |||||| |||| || ||   ||||||| |||||||| ||||| |||||     ||||| |||||||||||||||| ||  |||    
T  54606772 atttgtgtatttaatgtatgtcatgtcaaatcatacggtgtattgcacatttactcatacggtgtgctgctatatttttacttattgcaattgtgccctt 54606871  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||| ||||||||||||    
T  54606872 gattaaattaaaattaaacat 54606892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 51976302 - 51976243
Alignment:
Q  195 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    ||||||||||||||||||||||||| | |||||| | || |||||| |||| ||||||||    
T  51976302 ctatcaggttgttaacccaccaaaattcaaggattagaaaaacaaatggtgaataggata 51976243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 40417069 - 40416999
Alignment:
Q  188 ttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||| ||||||||||||| ||||| | ||||||  |||||||| ||||| ||||||| | |||||||||||    
T  40417069 ttttgtgctatcaggttgctaaccaaacaaaaaccaaggataagaataataaagggttggtaggataggat 40416999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 579
Target Start/End: Complemental strand, 40744262 - 40744213
Alignment:
Q  530 atattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||| |||||||| ||||||||||||||||||  |||||| ||||||    
T  40744262 atattttgtatgaggattgatttgtaataaggtaatgtttagtcttagag 40744213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 491
Target Start/End: Original strand, 43485384 - 43485497
Alignment:
Q  378 tatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaa 477  Q
    ||||||| ||||| ||| ||||||||| | ||| ||| || ||||   | |||| ||| ||||||||| ||||||||||| ||||  || | ||||||||    
T  43485384 tatttaattcatgccacttcagattatatggtgcattgcatatttgcccctaagatgtgtcattatatttttacttattgtaattgagtccctgattaaa 43485483  T
Q  478 tcaaaattaaacat 491  Q
    | ||||||||||||    
T  43485484 ttaaaattaaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 45818592 - 45818649
Alignment:
Q  184 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaag 241  Q
    |||| |||||||||||| ||||  ||| ||||||||| |||||||||||| |||||||    
T  45818592 ataggtttatgctatcaagttgccaactcaccaaaaactaaggataaaaacaacaaag 45818649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 556
Target Start/End: Original strand, 47871210 - 47871239
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaa 556  Q
    ||||||||||||||||||||||||||||||    
T  47871210 ttaatattttatatgaggactgatttgtaa 47871239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 22955294 - 22955086
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||||||||||| ||||| | ||||||| |||||||  ||||||||| | ||||| ||| |||||||||||||||| ||| | |    
T  22955294 atttgtgtatttaatccatgtcacgtcaaattatatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtccct 22955195  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  22955194 tattaaatcaacattaaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtatgagaactgatttgtaataaggtaaagttta 22955095  T
Q  571 gttttagag 579  Q
    |||||||||    
T  22955094 gttttagag 22955086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 4618737 - 4618529
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||| | ||| ||||| | ||||||| ||||||| |||||||  ||| |||||||||||||| ||||||||||| | | | |    
T  4618737 atttgtgtatttaattcatgtcgcttcaaattatatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgcaattgtatacct 4618638  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||| |||| ||||    
T  4618637 cattaaatcaaaattaaacatagattctcatttgtgcaccaagattgaaattccccttaatattttgtatgatgactgatttgtagtaagataaagttta 4618538  T
Q  571 gttttagag 579  Q
    |||||||||    
T  4618537 gttttagag 4618529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 367 - 579
Target Start/End: Original strand, 49002288 - 49002498
Alignment:
Q  367 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgt 466  Q
    ||||||||||||||||||  |||  ||  ||||||||| | ||||||| |||||||   | ||||||||  |||||||| |||||||||||||||| |||    
T  49002288 gagtatttgtgtatttaatccataccatatcagattatatggtgtattgcacattttcccttaaggtgt--cattatatctttacttattgcaattgtgt 49002385  T
Q  467 tcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaa 566  Q
       |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||     
T  49002386 gtctgattaaatcaaaattaaacatagattcccatttgtgcactaagattaaaattccccttaatattttgtatgaggactgatttgtaatgaggtaaag 49002485  T
Q  567 tttagttttagag 579  Q
    |||||||||||||    
T  49002486 tttagttttagag 49002498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 8133541 - 8133333
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||| | ||||||||||||| | ||||||| ||| |||  | ||||||| | |||||||||  |||||||||||||||  || | |    
T  8133541 atttgtgtatttaattcaagacacgtcagattatatggtgtattgcacgtttgcttataaggtctgtcattatatcattacttattgcaattgcgtccct 8133442  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     |||||||||||||||||| |||||||  ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  8133441 aattaaatcaaaattaaacgtagattcttatttgtgcagtaagattgaaattccccttaatattttacatgaagactgatttgtaataaggtaaagttta 8133342  T
Q  571 gttttagag 579  Q
    |||||||||    
T  8133341 gttttagag 8133333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 370 - 576
Target Start/End: Original strand, 5781583 - 5781786
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    |||||||||||||||  ||||||||||||  |||| | ||||||| || ||||   |||||  ||| ||||||||| |||| ||||||||||| ||| ||    
T  5781583 tatttgtgtatttaatccatgtcacgtca--ttatatggtgtattgcatatttgaccataaaatgtgtcattatatctttatttattgcaattgtgtcct 5781680  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||||||| |||||| ||    
T  5781681 tgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaatt-ccctttatattttgtatgatgactgatttgtaataaagtaaaactt 5781779  T
Q  570 agtttta 576  Q
    |||||||    
T  5781780 agtttta 5781786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 37854276 - 37854069
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||||||||||| ||||| | ||||||| |||||||  ||||||||| | |  |||||| |||||| ||||||||| ||| | |    
T  37854276 atttgtgtatttaatccatgtcacgtcacattatatggtgtattgcacatttgctcataaggtatgt--ttatatctttactgattgcaattgtgtccct 37854179  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactg-atttgtaataaggtaaaattt 569  Q
    ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||    
T  37854178 gattaaatcaaaattaaacatagattttcatttgtacactaagattgaaattccccttaatattttgtatgaggactgaatttggaataaagtaaagttt 37854079  T
Q  570 agttttagag 579  Q
    | ||||||||    
T  37854078 aattttagag 37854069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 374 - 579
Target Start/End: Complemental strand, 23402350 - 23402146
Alignment:
Q  374 tgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgat 473  Q
    ||||||||||| ||||||||||||| ||||| | ||||||| | ||||| | |||||| | | |||||||||||||||||||| ||||| ||| | ||||    
T  23402350 tgtgtatttaattcatgtcacgtcatattatatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttcaattgtgtccctgat 23402251  T
Q  474 taaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagtt 573  Q
    ||||||||||| |||||| ||||| |||||||||||||||| ||||||| ||||||||||||| || || ||||||||||||||| | |||| |||||||    
T  23402250 taaatcaaaat-aaacattgattctcatttgtgcactaagactgaaatttcccttaatattttgtacgatgactgatttgtaataggataaagtttagtt 23402152  T
Q  574 ttagag 579  Q
    ||||||    
T  23402151 ttagag 23402146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 437 - 579
Target Start/End: Original strand, 40382020 - 40382163
Alignment:
Q  437 tcattatatatttacttattgcaatta-tgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattt 535  Q
    ||||||||| |||||||||| |||||  ||| | | ||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  40382020 tcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaagattgaaatttcccttaatattt 40382119  T
Q  536 tatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    | |||| ||||||||||||||||||||||| |||||||||||||    
T  40382120 tgtatgcggactgatttgtaataaggtaaagtttagttttagag 40382163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 367 - 579
Target Start/End: Original strand, 7742981 - 7743204
Alignment:
Q  367 gagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgt 466  Q
    ||||||||||||||||||   ||||||||| ||||||| | |||||||  |||||| | ||||||| || ||||||||| |||||||||||||||| ||     
T  7742981 gagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtacatttgtccataaggcgtgtcattatatctttacttattgcaattgtgc 7743080  T
Q  467 tcttgattaaatcaaaattaaacatagattcacatttg-----------tgcactaagattgaaattccccttaatattttatatgaggactgatttgta 555  Q
     | ||||||||| |||||||||||||||||| ||||||           | ||||||||||||||| | | |||||||||||||||||| ||| ||||||    
T  7743081 ccctgattaaattaaaattaaacatagattctcatttgttttccatttatacactaagattgaaatgctctttaatattttatatgagggctgctttgta 7743180  T
Q  556 ataaggtaaaatttagttttagag 579  Q
    |||||||||| |||||||||||||    
T  7743181 ataaggtaaagtttagttttagag 7743204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 450 - 579
Target Start/End: Original strand, 4902465 - 4902594
Alignment:
Q  450 acttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactga 549  Q
    ||||||||||||  ||| | ||||||||||||||||||||||||||||  | || ||||||||||| |||||||||||||||||||| |||||| ||| |    
T  4902465 acttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaattccccttaatattttgtatgagtactaa 4902564  T
Q  550 tttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||||||||| |||||||||||||    
T  4902565 tttgtaataaggtaaagtttagttttagag 4902594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 371 - 491
Target Start/End: Original strand, 19786350 - 19786470
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||| ||||||| ||||| |  || ||| ||||||| |   |||||||| ||||||||| ||||||||||||||||  || |||    
T  19786350 atttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttgtctgtaaggtgtgtcattatatctttacttattgcaattgagtcctt 19786449  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  19786450 gattaaatcaaaattaaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 488 - 579
Target Start/End: Complemental strand, 10675124 - 10675033
Alignment:
Q  488 acatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||| ||||| |||||||| | ||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||| |||||| ||||||    
T  10675124 acatggattcccatttgtgtattaagatttaaattccccttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagag 10675033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 24429815 - 24429741
Alignment:
Q  184 atagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  24429815 atagctttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggat 24429741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 41482419 - 41482480
Alignment:
Q  193 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||    
T  41482419 tgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggata 41482480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 8758393 - 8758476
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||||| |||||||||||||| |||||   | ||||| |||||||||||||||| || |||||||||||| ||||||||||||    
T  8758393 gtgtattgcacatttattcatacggtgtgctactatatttttacttattgcaattgtgctcttgattaaattaaaattaaacat 8758476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 39645006 - 39644955
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||||||    
T  39645006 taacccaccaaaaactaaggataaaaataacaaaggatgagtaggataggat 39644955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 25470643 - 25470688
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| || ||||||||||||||||||| ||||||||||||    
T  25470643 ttaatattttgtacgaggactgatttgtaataaagtaaaatttagt 25470688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Original strand, 45980471 - 45980504
Alignment:
Q  209 acccaccaaaaattaaggataaaaataacaaagg 242  Q
    |||||||||||| |||||||||||||||||||||    
T  45980471 acccaccaaaaagtaaggataaaaataacaaagg 45980504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 2266838 - 2266631
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||| ||||| ||||||  | ||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| ||||   ||    
T  2266838 atttgtgtatttaatccatgccacgttagattacatggtgtattacacatttgtctataaggtgtgtcattatatctttacttattgcaactatgacttt 2266739  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  2266738 gattaaatcaaaattaaacatagattcccatttgtgcactaagattgaaatttcccttaatattttgtatgaggactgatttgtaataatgtaaagttta 2266639  T
Q  571 gttttagag 579  Q
     ||||||||    
T  2266638 -ttttagag 2266631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 9743654 - 9743864
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  ||||| |||||| ||||| | ||||||| ||||||| | ||||| |||| |||||| || ||||||||||||||||||||||||    
T  9743654 atttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaatctttacttattgcaattatgttctt 9743753  T
Q  471 gattaaatcaaaattaaac--atagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatt 568  Q
    |||||||||||||||||||  ||| |||| |||||||||||||||||| |  |||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  9743754 gattaaatcaaaattaaacatatatattctcatttgtgcactaagatttatgttccccttaatattttgtatgaggactggtttgtaataatgtaaaatt 9743853  T
Q  569 tagttttagag 579  Q
    |||||||||||    
T  9743854 tagttttagag 9743864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 17612401 - 17612608
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||| || |||||||||| |||||||  |  |||||| |||||||    ||||||||| |||||  || |||||||||||||||||||| ||     
T  17612401 atttgtgtatt-aattcatgtcacgccagattaaatgatgtatttcacatttgccaataaggtgtgtcattgcatctttacttattgcaattatgtccta 17612499  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    ||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  17612500 gattaaatcaaaattaaacatagattgccatttgtgtgctaagattgaaattcccctttatattttctatgaggactaatttgtaataaggtaaaattta 17612599  T
Q  571 gttttagag 579  Q
    |||||||||    
T  17612600 gttttagag 17612608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 366 - 578
Target Start/End: Original strand, 1012357 - 1012560
Alignment:
Q  366 cgagtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaa-ttat 464  Q
    |||||||||||||||||||  |||||||||||||||||| | ||||||| |||||||   |||||||||| ||||||||| |||||||||||||| || |    
T  1012357 cgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgcaatttgt 1012456  T
Q  465 gttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaa 564  Q
    || | ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||          ||||| || ||||||||||||||||||    
T  1012457 gtccctgattaaatcaaaattaaacatagattcctatttgtgcactaaaattgaaattcccct----------tatgaagattgatttgtaataaggtaa 1012546  T
Q  565 aatttagttttaga 578  Q
    ||||||||||||||    
T  1012547 aatttagttttaga 1012560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 386 - 579
Target Start/End: Original strand, 2570559 - 2570752
Alignment:
Q  386 tcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaatt 485  Q
    ||||||||||||||||||| | |||||||  | ||||    |||| |||| ||||||||| |||| ||||||||||| ||| | | |||||||||||| |    
T  2570559 tcatgtcacgtcagattatatggtgtattgtatatttggctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagt 2570658  T
Q  486 aaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||| |||||||||||||    
T  2570659 aaacatagatttccatttgtgcactaagattgaaattcaccttaatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagag 2570752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 425 - 579
Target Start/End: Original strand, 2707993 - 2708146
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattcc 524  Q
    |||| |||||| ||||||||| ||||||||||||||||  || | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2707993 tcatcaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaagattgaaattcc 2708092  T
Q  525 ccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||  |||||| ||||||| ||||||||||||||| ||||  ||||||||||||    
T  2708093 cctt-ctattttgtatgagggctgatttgtaataagataaagcttagttttagag 2708146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 371 - 536
Target Start/End: Complemental strand, 54995781 - 54995616
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||| ||||||||  ||||||| ||||| |||| |  |||||| ||||||| | ||||| |||| || |||||| |||||||||||||||| ||| | |    
T  54995781 atttgcgtatttaatccatgtcatgtcaggttatatgatgtattgcacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccct 54995682  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatatttt 536  Q
    |||||||||||||||||| ||||||||  ||||||| ||||||||||||||||||| |||||||||    
T  54995681 gattaaatcaaaattaaatatagattcttatttgtgtactaagattgaaattccccctaatatttt 54995616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 2183411 - 2183346
Alignment:
Q  193 tgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2183411 tgctatcaggttgctaacccaccaaaaattaaggataaaaataacaaaggttggataggataggat 2183346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 45413766 - 45413835
Alignment:
Q  190 ttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggata 259  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||    
T  45413766 ttatgctatcaggttgctaacccaccaaaaactaaggataaaaataacaaaggttagataggataggata 45413835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 499 - 578
Target Start/End: Original strand, 49878869 - 49878948
Alignment:
Q  499 catttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttaga 578  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||| |||||| |||||    
T  49878869 catttgtgcattaagattgaaatttcccttaatattttgtatgatgactgatttataataaggtaaagtttagtcttaga 49878948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 26635244 - 26635309
Alignment:
Q  177 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagg 242  Q
    |||||| |||||||| ||||||||||||| |||||||||||||| ||||||||| ||||| |||||    
T  26635244 gcgcttgatagttttgtgctatcaggttgctaacccaccaaaaactaaggataagaataataaagg 26635309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 376 - 491
Target Start/End: Complemental strand, 33036179 - 33036064
Alignment:
Q  376 tgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgatta 475  Q
    |||||||||  ||||| |||| ||||||| | ||||||| |||||||    ||||||| | ||||||||| ||||||||||||||||  ||   ||||||    
T  33036179 tgtatttaatccatgttacgttagattatattgtgtattgcacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctctgatta 33036080  T
Q  476 aatcaaaattaaacat 491  Q
    ||||||||||||||||    
T  33036079 aatcaaaattaaacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 491
Target Start/End: Original strand, 37793487 - 37793570
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||  |||||| |||||| |||||| || ||||| |||||||||||||||| |||  |||||||||| ||||||||||||    
T  37793487 gtgtattgtacatttgttcatatggtgtaccactatatttttacttattgcaattgtgtctttgattaaattaaaattaaacat 37793570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 34666546 - 34666464
Alignment:
Q  172 aacaagcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||| |||||| |||| ||||||||||||||||| |||||||| |||| ||| |||||||||||| |||| | | ||||||||    
T  34666546 aacacgcgcttgatagctttatgctatcaggttgctaacccacaaaaagttacggataaaaataagaaagagggaataggata 34666464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 491
Target Start/End: Complemental strand, 5915717 - 5915657
Alignment:
Q  431 ggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||| || ||||| ||||||| |||||||| ||| ||||||||||||||||||||||||    
T  5915717 ggtgtaccactatatttttacttgttgcaattgtgtccttgattaaatcaaaattaaacat 5915657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 579
Target Start/End: Complemental strand, 54995068 - 54995020
Alignment:
Q  531 tattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||||||    
T  54995068 tattttgtatgaggactgatttgtaataaagtaaaagttagttttagag 54995020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 36625533 - 36625600
Alignment:
Q  191 tatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||||||| |||| ||||||| |||||| ||||||| | ||| |||||||||| ||||||||||||    
T  36625533 tatgctatcatgttgctaacccaacaaaaagtaaggattagaattacaaagggtgaataggataggat 36625600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 491
Target Start/End: Complemental strand, 17513126 - 17513008
Alignment:
Q  373 ttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttga 472  Q
    |||||||||||| ||||||| ||||||||||| |||||| || ||||| |    |||| |||| ||||||||| |||| |||||| ||||  ||   | |    
T  17513126 ttgtgtatttaattcatgtcgcgtcagattatatagtgtgttgcacatctgcatataatgtgtgtcattatatctttatttattgtaattgagtctataa 17513027  T
Q  473 ttaaatcaaaattaaacat 491  Q
    |||||||||||||||||||    
T  17513026 ttaaatcaaaattaaacat 17513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 371 - 445
Target Start/End: Complemental strand, 20097469 - 20097395
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatat 445  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||| || |||| |  ||||| ||| |||||||||    
T  20097469 atttgtgtatttaattcatgccacgtcagattatatagtgtattgcatatttgtctataagatgtgtcattatat 20097395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 5915096 - 5915051
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||    
T  5915096 ttaatattttttatgaggactaatttgtaataaagtaaaatttagt 5915051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 5812709 - 5812753
Alignment:
Q  447 tttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  5812709 tttacttattgcaattgtgtcattgattaaatcaaaattaaacat 5812753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 246
Target Start/End: Complemental strand, 29539245 - 29539206
Alignment:
Q  207 taacccaccaaaaattaaggataaaaataacaaagggtgg 246  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  29539245 taacccaccaaaaattagggataaaaataacaaatggtgg 29539206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 258
Target Start/End: Original strand, 55945653 - 55945716
Alignment:
Q  195 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||||| |||||||||||||||||| |||| ||| ||||||| ||| || | ||||||||||||    
T  55945653 ctatcatgttgttaacccaccaaaagttaaagattaaaataagaaatggagaataggataggat 55945716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 369 - 491
Target Start/End: Original strand, 22729775 - 22729896
Alignment:
Q  369 gtatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttc 468  Q
    ||||||||||||||||  |||| ||| ||| |||||   ||||||| |||||||  ||||| |||||  || ||||| || ||||||||||| | || ||    
T  22729775 gtatttgtgtatttaatgcatgccacatcaaattatacggtgtattgcacatttgctcatatggtgtgccactatatcttaacttattgcaactgtg-tc 22729873  T
Q  469 ttgattaaatcaaaattaaacat 491  Q
     ||||| ||||||||||||||||    
T  22729874 ctgattgaatcaaaattaaacat 22729896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 33235785 - 33235858
Alignment:
Q  185 tagttttatgctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    ||||||||| ||||||  ||| |||| || |||||||||||||||| ||| ||||||| |  ||||||||||||    
T  33235785 tagttttatcctatcatattgctaactcatcaaaaattaaggataataattacaaaggttcaataggataggat 33235858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 51204650 - 51204723
Alignment:
Q  372 tttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatat 445  Q
    |||||||||||||  |||||||| ||||||||| | ||| ||| |||||||  | ||||||||| |||||||||    
T  51204650 tttgtgtatttaatccatgtcacatcagattatatggtgcattgcacatttgctaataaggtgtgtcattatat 51204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 381 - 578
Target Start/End: Original strand, 34993907 - 34994104
Alignment:
Q  381 ttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatca 480  Q
    |||| ||||||||| ||||||||| | ||||||| ||||||| | ||||| || | | ||||||| |||||||||| ||||| ||| |||||||||||||    
T  34993907 ttaattcatgtcacatcagattatatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatca 34994006  T
Q  481 aaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttaga 578  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||| || ||||||||||||||    
T  34994007 aaattaaacatagattctcatttatgcactaagattgaaattccccttaatattttatataagaactgatttgtaataagatacaatttagttttaga 34994104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 370 - 579
Target Start/End: Complemental strand, 11084135 - 11083929
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||| |||||||||  ||||||||||||  |||| | |||||||||||||||   |||||||||| ||||||||| |||||||||||||||| |||       
T  11084135 tatttatgtatttaatccatgtcacgtca--ttatatggtgtattacacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtctc 11084038  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||| ||| ||||||||||||||||||| ||||  ||    
T  11084037 tgattaaatcaaaattaaacatagattctcatttgttcattaagattgaaattcccctt-atattttgtataaggactgatttgtaataagataaagctt 11083939  T
Q  570 agttttagag 579  Q
    ||||||||||    
T  11083938 agttttagag 11083929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 370 - 579
Target Start/End: Complemental strand, 26301906 - 26301695
Alignment:
Q  370 tatttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttct 469  Q
    ||||| ||||||||| |||||||||||||  |||| |  |||||| || |||||| |||||| ||| ||||||||| |||||||||||||||| ||| |     
T  26301906 tatttatgtatttaattcatgtcacgtca--ttatatgatgtattgcatatttatccataagatgtgtcattatatctttacttattgcaattgtgtccc 26301809  T
Q  470 tgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattcccctta---atattttatatgaggactgatttgt-aataaggtaaa 565  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||   ||||||| |||||| |||||||||| |||||| ||||    
T  26301808 tgattaaatcaaaattaaacatagattctcatttgtgtactaagattgaaattccctttatatatattttgtatgagaactgatttgtaaataagataaa 26301709  T
Q  566 atttagttttagag 579  Q
    | ||| ||||||||    
T  26301708 acttaattttagag 26301695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 426 - 558
Target Start/End: Original strand, 30341145 - 30341277
Alignment:
Q  426 cataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccc 525  Q
    |||||| ||| ||||||||| || ||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||    
T  30341145 cataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattagtgcactaagattgaaattccc 30341244  T
Q  526 cttaatattttatatgaggactgatttgtaata 558  Q
    ||||||||||| |||||||||| ||||||||||    
T  30341245 cttaatattttgtatgaggactaatttgtaata 30341277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 19631815 - 19632021
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||  |||||||||| ||||||| | ||||||| |||||||    ||||||||| ||||||||| |||||||||||||||  |||   |    
T  19631815 atttgtgtatttaatccatgtcacgttagattatatggtgtattgcacatttgcctataaggtgtttcattatatctttacttattgcaatcgtgtctct 19631914  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||  | ||||||   |||  ||||||||||||| |||    
T  19631915 gattaaatcaaaattaaaaataaattctcatttgtgcactaagattgaaattcccctcaatattt--tgtgaggatcaattaataataaggtaaaactta 19632012  T
Q  571 gttttagag 579  Q
    |||||||||    
T  19632013 gttttagag 19632021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 472 - 579
Target Start/End: Original strand, 4104183 - 4104290
Alignment:
Q  472 attaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttag 571  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||| ||| |||||    
T  4104183 attaaatcaaaattaaacataaattcccatttgtgcactaagattgaaattctccttaatattttgtatgaagattgatttgtaataaggcaaagtttag 4104282  T
Q  572 ttttagag 579  Q
    ||||||||    
T  4104283 ttttagag 4104290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 486 - 579
Target Start/End: Complemental strand, 6613860 - 6613767
Alignment:
Q  486 aaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||| || |||||| ||||||    
T  6613860 aaacatagattcttatttgtgcactaagattgaaattctccttaatattttgtatgaggattcatttgtaataaggtgaagtttagtcttagag 6613767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 16342697 - 16342752
Alignment:
Q  177 gcgcttaatagttttatgctatcaggttgttaacccaccaaaaattaaggataaaa 232  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  16342697 gcgcttgatagatttatgctatcaggttgctaacccaccaaaaattaaggataaaa 16342752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 4488510 - 4488444
Alignment:
Q  425 tcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    ||||| |||||| || ||||| ||||||| |||||||| ||||||||||||||||||||||||||||    
T  4488510 tcatatggtgtaccactatatttttacttgttgcaattgtgttcttgattaaatcaaaattaaacat 4488444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 491
Target Start/End: Original strand, 25441088 - 25441148
Alignment:
Q  431 ggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaacat 491  Q
    |||||| || ||||| |||||||||||||||| ||| ||||||||||| ||||||||||||    
T  25441088 ggtgtaccactatatttttacttattgcaattgtgtccttgattaaattaaaattaaacat 25441148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 8547436 - 8547495
Alignment:
Q  195 ctatcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||||| |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8547436 ctatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8547495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 4487882 - 4487837
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    ||||| |||| |||||||||||||||||||||| ||||||||||||    
T  4487882 ttaatgttttgtatgaggactgatttgtaataaagtaaaatttagt 4487837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 25441709 - 25441754
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||    
T  25441709 ttaatattttgtatgaggactgatttgtgataaagtaaaatttagt 25441754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 8573796 - 8573848
Alignment:
Q  202 gttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggata 254  Q
    |||| |||||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgata 8573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 14228002 - 14228048
Alignment:
Q  267 gatagtttatatcatatcatgtcttcctatcctgtgcaccaaacgact 314  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  14228002 gatagttt-tatcatatcatgtcttcttatcctatgcaccaaacgact 14228048  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 569
Target Start/End: Complemental strand, 18306707 - 18306665
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaattt 569  Q
    |||||||||| || ||||| |||||||||||||||||||||||    
T  18306707 ttaatattttgtacgaggattgatttgtaataaggtaaaattt 18306665  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 129102 - 129163
Alignment:
Q  197 atcaggttgttaacccaccaaaaattaaggataaaaataacaaagggtggataggataggat 258  Q
    |||| |||| || |||| |||||| ||| |||||||||||||||||||| ||| ||||||||    
T  129102 atcatgttgctagcccatcaaaaactaaagataaaaataacaaagggtgaatatgataggat 129163  T

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Target: scaffold0200 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 371 - 579
Target Start/End: Complemental strand, 24799 - 24592
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| ||||||||||||||||||| | ||||||| | |||||   |||||||| | | |||||||||||||||||| ||||| ||| | |    
T  24799 atttgtgtatttaattcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattccaattgtgtccct 24700  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| || || |||||||||||||||||||||| ||||    
T  24699 gattaaatcaaaat-aaacatagattctcatttgtgcactaagattgaaatttcccttaatattttgtacgatgactgatttgtaataaggtaaagttta 24601  T
Q  571 gttttagag 579  Q
    ||| |||||    
T  24600 gttctagag 24592  T

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Target: scaffold0050 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 371 - 579
Target Start/End: Original strand, 5656 - 5863
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    |||||||||||||| |||||||| || ||||||| | ||||||| |||||||    ||||||||| ||||||||||||| |||||||||||||||| | |    
T  5656 atttgtgtatttaattcatgtcatgttagattatatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgcaattatgtccct 5755  T
Q  471 gattaaatcaaaattaaacatagattcacatttgtgcactaagattgaaattccccttaatattttatatgaggactgatttgtaataaggtaaaattta 570  Q
     |||||||||||||||||||| ||||| ||||||| || |||||| ||||||  | |||||||||| |||||| |||||||| |||||||||||| ||||    
T  5756 cattaaatcaaaattaaacatggattcgcatttgttcattaagatcgaaatt-tctttaatattttgtatgagaactgatttataataaggtaaagttta 5854  T
Q  571 gttttagag 579  Q
    |||||||||    
T  5855 gttttagag 5863  T

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Target: scaffold0262 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 408 - 488
Target Start/End: Complemental strand, 12111 - 12031
Alignment:
Q  408 gtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttcttgattaaatcaaaattaaa 488  Q
    ||||||| || |||| | |||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  12111 gtgtattgcatatttgtccataagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

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Target: scaffold0262; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 579
Target Start/End: Complemental strand, 11495 - 11447
Alignment:
Q  531 tattttatatgaggactgatttgtaataaggtaaaatttagttttagag 579  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  11495 tattttgtatgaggactgatttgtaataagataaaatttagtcttagag 11447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 371 - 491
Target Start/End: Complemental strand, 9113 - 8993
Alignment:
Q  371 atttgtgtatttaagtcatgtcacgtcagattatttagtgtattacacatttattcataaggtgtatcattatatatttacttattgcaattatgttctt 470  Q
    ||||||||||||||   |||||| |||| |||||  ||| |||| |||||||| | ||| | |||  |||||||| |||||| ||||||||| ||| |||    
T  9113 atttgtgtatttaatgtatgtcatgtcaaattatacagtttattgcacatttacttatacgatgttccattatatctttactaattgcaattgtgtcctt 9014  T
Q  471 gattaaatcaaaattaaacat 491  Q
    |||||||||||||||||||||    
T  9013 gattaaatcaaaattaaacat 8993  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 65992 - 66037
Alignment:
Q  527 ttaatattttatatgaggactgatttgtaataaggtaaaatttagt 572  Q
    |||||||||| |||||||||| |||| |||||||||||| ||||||    
T  65992 ttaatattttgtatgaggactaatttataataaggtaaagtttagt 66037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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