View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_42 (Length: 343)
Name: NF14366_low_42
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 26642185 - 26641871
Alignment:
| Q |
12 |
attctcatatacatatatttcaaaagtatgtactccaacattgaaagatcacttagcaagttttttgtatattaatatatcggatgtaacaaactctttt |
111 |
Q |
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| T |
26642185 |
attctcatatacatatatttcaaaagtatgtactccaacattgaaagatcacttaacaagtttattgtatattaatatatcagatgtagcaaactctttt |
26642086 |
T |
|
| Q |
112 |
ttgtttgaccggagatgtaacaaaaccttattttcactatacacacaactcatgcaaagaaaaatgaccccatttcatttagaaagttacttttcttata |
211 |
Q |
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| T |
26642085 |
ttgtttgactggagatgtaacaaaaccttattttcactatacacacaactcatgcaaataaaaattaccccattgcatttagaaagttacttttcttatc |
26641986 |
T |
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| Q |
212 |
ggagaaattgcttaaaaacggatacaactgtagttaatggatcaatcactttttaagtcagctaaaaccgacttaaaaaatgattagtttgctttaaaag |
311 |
Q |
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| T |
26641985 |
ggagaaattgcttaaaaacggatccaactatagttaatgggtcaatcactttttaagtcggctaaaaccaacttaaaaagtgattagtttgctttaaaag |
26641886 |
T |
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| Q |
312 |
gtgtccaacggtagt |
326 |
Q |
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|||| ||| |||||| |
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| T |
26641885 |
gtgttcaatggtagt |
26641871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 26611477 - 26611436
Alignment:
| Q |
145 |
tcactatacacacaactcatgcaaagaaaaatgaccccattt |
186 |
Q |
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| T |
26611477 |
tcactatacacacaactcatgcaaaggaaaatgaccccattt |
26611436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 26634127 - 26634086
Alignment:
| Q |
145 |
tcactatacacacaactcatgcaaagaaaaatgaccccattt |
186 |
Q |
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| T |
26634127 |
tcactatacacacaactcatgcaaaggaaaatgaccccattt |
26634086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 26626669 - 26626628
Alignment:
| Q |
145 |
tcactatacacacaactcatgcaaagaaaaatgaccccattt |
186 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
26626669 |
tcactatacacacaactaatgcaaaggaaaatgaccccattt |
26626628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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