View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_44 (Length: 319)
Name: NF14366_low_44
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 58 - 294
Target Start/End: Complemental strand, 2294148 - 2293907
Alignment:
| Q |
58 |
ggtacaaacggtgatatctaattggaccgtttcgaaaagaagcaaatttacagtctaagtaagtttatcaaacctcagattcgaaattaaattttttgac |
157 |
Q |
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| T |
2294148 |
ggtacaaacggtgatatctaattggtctgtttccaaaagaagcaaatttacggtctaagtaagtttatcaaacctcagattcgaaattaaattttttgac |
2294049 |
T |
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| Q |
158 |
aatttataaaagaagagagagaaaaagaaccatatcctaatt-----tgttgtatctatctaaacagtagtacattacgcactgttttagtactattgtt |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
2294048 |
aatttataaaagaagagagagaaaaagaaccatatcctaatttcatctgttgtatctatctaaacagcagtacattacgcactgtttttgtactattgtt |
2293949 |
T |
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| Q |
253 |
tttcttgttttcaattttcaatcagaaaaaagtgttattgtt |
294 |
Q |
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| T |
2293948 |
tttcttgttttcagttttcaatcagaaaaaagtgttattgtt |
2293907 |
T |
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