View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_45 (Length: 316)

Name: NF14366_low_45
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_45
NF14366_low_45
[»] chr7 (6 HSPs)
chr7 (34-206)||(5568259-5568433)
chr7 (194-307)||(5568450-5568563)
chr7 (190-302)||(3615226-3615338)
chr7 (227-307)||(35611258-35611338)
chr7 (134-181)||(35611219-35611266)
chr7 (160-213)||(19005420-19005473)
[»] chr4 (2 HSPs)
chr4 (190-307)||(9981226-9981343)
chr4 (198-302)||(20855635-20855740)
[»] scaffold1903 (1 HSPs)
scaffold1903 (207-302)||(337-432)
[»] chr3 (4 HSPs)
chr3 (193-307)||(54670699-54670810)
chr3 (210-302)||(33130574-33130659)
chr3 (133-206)||(37460532-37460605)
chr3 (154-215)||(11458043-11458104)
[»] chr8 (1 HSPs)
chr8 (194-307)||(14735436-14735550)
[»] scaffold0197 (1 HSPs)
scaffold0197 (159-213)||(25986-26040)
[»] chr5 (1 HSPs)
chr5 (154-206)||(17851882-17851934)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 5568259 - 5568433
Alignment:
Q  34 caccaaatcaagaagtatgtgcatgaattgcaaatcctgatgtaccatgactactaatccaaaagcttgcatttgtttgcaaggctataattctcgaacg 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5568259 caccaaatcaagaagtatgtgcatgaattgcaaatcctgatgtaccatgactactaatccaaaagcttgcatttgtttgcaaggctataattctcgaacg 5568358  T
Q  134 ttgcttttctgacattagatgttttctaatg--acacatggaaacgactaaaatatctccaacggtagttaacta 206  Q
    |||||||||||||||||||||||| ||||||  ||||||| ||| |||||||||| || ||  ||||||||||||    
T  5568359 ttgcttttctgacattagatgtttcctaatgacacacatgaaaatgactaaaataccttcagtggtagttaacta 5568433  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 194 - 307
Target Start/End: Original strand, 5568450 - 5568563
Alignment:
Q  194 cggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaat 293  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  5568450 cggtagttaactaccgttgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcattcaat 5568549  T
Q  294 tcaattcctctgtg 307  Q
    ||||||||| ||||    
T  5568550 tcaattcctttgtg 5568563  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 3615338 - 3615226
Alignment:
Q  190 ccaacggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcatt 289  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||||||||||||    
T  3615338 ccaacggtagttaactatcgctgaatacttattagtcaaatgactacaaagtgcttccatcataggtcacaacaatacaaacaaaattttcagaagcatt 3615239  T
Q  290 caattcaattcct 302  Q
    ||| |||||||||    
T  3615238 caactcaattcct 3615226  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 35611258 - 35611338
Alignment:
Q  227 aaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcctctgtg 307  Q
    |||||||||||||||||| ||||| ||||| |||  |||  ||||||||||||| |||||| |||||||||||||| ||||    
T  35611258 aaatgactacaaagtgcttccatcgcaggttacaacaatttaaacaaaattttcggaagcaatcaattcaattcctttgtg 35611338  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 35611219 - 35611266
Alignment:
Q  134 ttgcttttctgacattagatgttttctaatgacacatggaaacgacta 181  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  35611219 ttgcttttctgacattagatgtttcctaatgacacatggaaatgacta 35611266  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 19005473 - 19005420
Alignment:
Q  160 taatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctga 213  Q
    |||| ||||||||||| | |||||||| || || ||||||||||||||||||||    
T  19005473 taataacacatggaaatgtctaaaataccttcagcggtagttaactaccgctga 19005420  T

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Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 9981226 - 9981343
Alignment:
Q  190 ccaacggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcatt 289  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  9981226 ccaacagtagttaactaccgatgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcatt 9981325  T
Q  290 caattcaattcctctgtg 307  Q
    ||||||||||||| ||||    
T  9981326 caattcaattcctttgtg 9981343  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 20855740 - 20855635
Alignment:
Q  198 agttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggt--cacagtaatacaaacaaaattttcagaagcattcaattc 295  Q
    |||||||||||| ||||||||||||| |||||||||||| | |||||  ||||||||||  |||||  ||||||||||||||||||||| || |||||||    
T  20855740 agttaactaccgttgaatacttgttaatcaaatgactac-aggtgctttcatcacaggtcacacagccatacaaacaaaattttcagaaacaatcaattc 20855642  T
Q  296 aattcct 302  Q
    |||||||    
T  20855641 aattcct 20855635  T

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Target: scaffold1903 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 337 - 432
Alignment:
Q  207 ccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcct 302  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  337 ccgctgaatacttgttagtcaaatgactacaaagtgcttccatcacaggtcacaacaatacaaacaaaattttcagaagcattcaattcaattcct 432  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 54670699 - 54670810
Alignment:
Q  193 acggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaa 292  Q
    |||||| ||||||| |||||||||||||||| |||||||||||| |||||||  ||||||||||||||   ||||||||||||||||||||| || ||||    
T  54670699 acggtaattaactatcgctgaatacttgttaatcaaatgactac-aagtgctttcatcacaggtcaca--tatacaaacaaaattttcagaaacaatcaa 54670795  T
Q  293 ttcaattcctctgtg 307  Q
    |||||||||| ||||    
T  54670796 ttcaattcctttgtg 54670810  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 33130659 - 33130574
Alignment:
Q  210 ctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcacagtaatacaaacaaaattttcagaagcattcaattcaattcct 302  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||  |       ||||||||||||| ||||||||| | ||||||||||||    
T  33130659 ctgaatacttattagtcaaatgactaccaagtgcttccatcacagccc-------tacaaacaaaattctcagaagcaattaattcaattcct 33130574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 37460605 - 37460532
Alignment:
Q  133 gttgcttttctgacattagatgttttctaatgacacatggaaacgactaaaatatctccaacggtagttaacta 206  Q
    |||||||||||||||| | |||||| ||||||||||| | ||| ||| ||| || ||||| |||||||||||||    
T  37460605 gttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaacta 37460532  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 11458104 - 11458043
Alignment:
Q  154 gttttctaatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctgaat 215  Q
    |||| ||||| ||||||||||| ||| ||| || | ||||||||||||||| ||||||||||    
T  11458104 gtttcctaataacacatggaaatgacgaaattacccccaacggtagttaaccaccgctgaat 11458043  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 307
Target Start/End: Complemental strand, 14735550 - 14735436
Alignment:
Q  194 cggtagttaactaccgctgaatacttgttagtcaaatgactacaaagtgctaccatcacaggtcaca--gtaatacaaacaaaattttcagaagcattca 291  Q
    ||||||| |||| ||| ||||||||||||| |||||||||||||| |||||   |||||| ||||||  |  ||||||||||||||||||||| || | |    
T  14735550 cggtagtcaactgccgttgaatacttgttaatcaaatgactacaa-gtgcttatatcacatgtcacaccgccatacaaacaaaattttcagaaacaataa 14735452  T
Q  292 attcaattcctctgtg 307  Q
    ||||||||||| ||||    
T  14735451 attcaattcctttgtg 14735436  T

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Target: scaffold0197 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 25986 - 26040
Alignment:
Q  159 ctaatgacacatggaaacgactaaaatatctccaacggtagttaactaccgctga 213  Q
    ||||| ||||||||||| | | |||||| ||||||||||||||||||||||||||    
T  25986 ctaataacacatggaaatgtcaaaaatacctccaacggtagttaactaccgctga 26040  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 17851882 - 17851934
Alignment:
Q  154 gttttctaatgacacatggaaacgactaaaatatctccaacggtagttaacta 206  Q
    |||||||||| ||| ||||||| ||| ||| || |||||||||||||||||||    
T  17851882 gttttctaataacatatggaaatgacaaaattacctccaacggtagttaacta 17851934  T

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