View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_51 (Length: 285)
Name: NF14366_low_51
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_51 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 28290388 - 28290672
Alignment:
| Q |
1 |
tcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtttattttagcggaatggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290388 |
tcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtttattttagcggaatggg |
28290487 |
T |
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| Q |
101 |
tgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28290488 |
tgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgtgtt |
28290587 |
T |
|
| Q |
201 |
gactgtgaaaagaggtttctttggctgcaagtaagttcattttccttttatattgaattgtgtttatttgattttcaccgatcag |
285 |
Q |
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| T |
28290588 |
gactgtgaaaagaggtttctttggctgcaagtaagttcattttccttttatattgaattgtgtttatttgattttcaccgatcag |
28290672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 28282115 - 28282348
Alignment:
| Q |
3 |
gtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatt-tataaatttggcgtaattgtttattttagcggaatgggt |
101 |
Q |
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| T |
28282115 |
gtgtttctgctgtggggagagtatgctcaggagaaaattcggtactgccattagttgattctataaatttggcgtaattgtttattttagcggaatgggc |
28282214 |
T |
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| Q |
102 |
gacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttg |
201 |
Q |
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| T |
28282215 |
gacaagcaagttattcttctcactttggg--tgtcttatattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagct |
28282312 |
T |
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| Q |
202 |
actgtgaaaagaggtttctttggctgcaagtaagtt |
237 |
Q |
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| T |
28282313 |
actgtgaaaggaggtttcttcggctgcaagtaagtt |
28282348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 19251144 - 19251244
Alignment:
| Q |
135 |
tcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaa |
234 |
Q |
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|||||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||| |
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| T |
19251144 |
tcttatgtgcagcataattgatgcaaccaagcatcacattctaaaagctgcacatccctctgagttgactgtgaaaaaaggtttctttggctgcaagtaa |
19251243 |
T |
|
| Q |
235 |
g |
235 |
Q |
| |
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| |
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| T |
19251244 |
g |
19251244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 29558474 - 29558345
Alignment:
| Q |
99 |
ggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagctt-aattgatcaaaccaagcatcacattctaaaagctgaacatccctccgc |
197 |
Q |
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|||||||| |||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
29558474 |
ggtgacaaacaagttattctgcttacttt--------cttgtatgcagttttaattgatcaaaccaagcatcacattctgaaagctgagcatccttccgt |
29558383 |
T |
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| Q |
198 |
gttgactgtgaaaagaggtttctttggctgcaagtaag |
235 |
Q |
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| T |
29558382 |
gttgactgtgaaaagaggtttcttcggctgcaagtaag |
29558345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 237
Target Start/End: Original strand, 28278529 - 28278594
Alignment:
| Q |
172 |
attctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaagtt |
237 |
Q |
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| T |
28278529 |
attctgaaagctgcacatccctccaggttgactgtggaaagaggtttctttagctgcaagtaagtt |
28278594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 28303471 - 28303558
Alignment:
| Q |
148 |
ttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaag |
235 |
Q |
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||||||||| |||||| ||||||||||||||||||| |||||| |||| ||| ||| ||| ||||| |||||||| |||| ||||| |
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| T |
28303471 |
ttaattgatgcaaccaaacatcacattctaaaagctgcacatccttccggtttgtctgcgaatagaggcttctttggttgcaggtaag |
28303558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 28290673 - 28290709
Alignment:
| Q |
240 |
ttttccttttatattgaattgtgtttatttgattttc |
276 |
Q |
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| T |
28290673 |
ttttccttttatattgaattgtgttaatttgattttc |
28290709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 28303139 - 28303190
Alignment:
| Q |
3 |
gtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccatt |
54 |
Q |
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| T |
28303139 |
gtgtttctgctgtggggaaagtctgctcaggagaaacttaggtactaccatt |
28303190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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