View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_52 (Length: 274)
Name: NF14366_low_52
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 651460 - 651708
Alignment:
| Q |
9 |
agattatactgagagaaaaataaggcctaatttctgatcttggcagaggattctcttatttactccttgagttttactgtgtcaaacattaatgagattt |
108 |
Q |
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| T |
651460 |
agattatattgagagaaaaataaggcctaatttctgatcttggcagaggattctcttatttactccttgagttttactgtgtcaaacattaatgagattt |
651559 |
T |
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| Q |
109 |
tataatacaagcaatgaacacannnnnnncatcattcttttccttttctcaatttatatttctattatatgactttatgtgtgaagaagctttcatatta |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
651560 |
tataatacaagcaatgaacacatttttttcatcattcttttccttttctcaatttatatttctattatatgactttatgtgtgaagaagctttcatatta |
651659 |
T |
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| Q |
209 |
aagcatatttttccctttttcaactaagatatgctgaagaatcatatat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
651660 |
aagcatatttttccctttttcaactaagatatgctgaagaatcatatat |
651708 |
T |
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