View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14366_low_54 (Length: 262)

Name: NF14366_low_54
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14366_low_54
NF14366_low_54
[»] chr1 (6 HSPs)
chr1 (1-250)||(13382605-13382854)
chr1 (12-246)||(13393985-13394219)
chr1 (11-176)||(13406942-13407107)
chr1 (11-121)||(19174632-19174742)
chr1 (12-71)||(13391003-13391062)
chr1 (134-176)||(13624939-13624981)
[»] scaffold0006 (1 HSPs)
scaffold0006 (132-176)||(123240-123284)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 13382605 - 13382854
Alignment:
Q  1 cttgtggcatatcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcctactccacctccaacatcaaccaacgttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13382605 cttgtggcatatcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcctactccacctccaacatcaaccaacgttga 13382704  T
Q  101 gactccttcaaatcctttataaaattgaaggatccttttaatttccaatggaccagaatgagccattgctttgttacaagtatcattcaattctttgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13382705 gactccttcaaatcctttataaaattgaaggatccttttaatttccaatggaccagaatgagccattgctttgttacaagtatcattcaattctttgttt 13382804  T
Q  201 gtcttggtgtattgataaaatgatgtcccattgatactttggaaaatatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13382805 gtcttggtgtattgataaaatgatgtcccattgatactttggaaaatatt 13382854  T

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Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 13393985 - 13394219
Alignment:
Q  12 tcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcctactccacctccaacatcaaccaacgttgagactccttcaa 111  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||    
T  13393985 tcaaaattaactcccttaattgaaggatattgagagagaatgagttttagggtttctcctactccacctccaacatcaaccaatgttgagattccttcaa 13394084  T
Q  112 atcctttataaaattgaaggatccttttaatttccaatggaccagaatgagccattgctttgttacaagtatcattcaattctttgtttgtcttggtgta 211  Q
    | |||||||| ||||  ||||||||||||||||| ||||| ||||| ||  |||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  13394085 aacctttatataatttgaggatccttttaatttctaatggtccagattgtcccattgctttgttaaaaacatcattcaattctttgtttgtcttggtgta 13394184  T
Q  212 ttgataaaatgatgtcccattgatactttggaaaa 246  Q
    |||||||||||||||||||||||||||||| ||||    
T  13394185 ttgataaaatgatgtcccattgatactttgaaaaa 13394219  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 13406942 - 13407107
Alignment:
Q  11 atcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcctactccacctccaacatcaaccaacgttgagactccttca 110  Q
    |||||||||||| || || ||||||||||||| ||| |||||  |||| |  |  || ||||||||||| || ||||||||||  ||||||||| | |||    
T  13406942 atcaaaattaatgccttttattgaaggatattcagatataatctgtttcaaagcattccctactccaccacctacatcaaccagtgttgagacttcctca 13407041  T
Q  111 aatcctttataaaattgaaggatccttttaatttccaatggaccagaatgagccattgctttgtta 176  Q
    ||||||||||| | |  ||| |||||||| ||||| ||||||||||| ||||||||||||||||||    
T  13407042 aatcctttatatagtgtaagaatccttttcatttctaatggaccagattgagccattgctttgtta 13407107  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 19174742 - 19174632
Alignment:
Q  11 atcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcctactccacctccaacatcaaccaacgttgagactccttca 110  Q
    |||||||||||| || || ||||||||||||| ||| |||||  |||| |  |  || ||||||||||| || ||||||||||  ||||||||||| |||    
T  19174742 atcaaaattaatgccttttattgaaggatattcagatataatctgtttcaaagcattccctactccaccacctacatcaaccagtgttgagactccctca 19174643  T
Q  111 aatcctttata 121  Q
    |||||||||||    
T  19174642 aatcctttata 19174632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 13391003 - 13391062
Alignment:
Q  12 tcaaaattaattcccttaattgaaggatattgagagataatgagttttagggtctttcct 71  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||| |||| ||||    
T  13391003 tcaaaatttactccgttgattgaaggatattgagagataatgagttttagcgtctctcct 13391062  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 13624939 - 13624981
Alignment:
Q  134 ccttttaatttccaatggaccagaatgagccattgctttgtta 176  Q
    |||||| |||||||||||| ||||||| |||||||||||||||    
T  13624939 ccttttcatttccaatggatcagaatgggccattgctttgtta 13624981  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 123240 - 123284
Alignment:
Q  132 atccttttaatttccaatggaccagaatgagccattgctttgtta 176  Q
    |||||||| ||||||||||||| |||||| |||||||||| ||||    
T  123240 atccttttcatttccaatggactagaatgggccattgcttcgtta 123284  T

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