View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_58 (Length: 251)
Name: NF14366_low_58
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_58 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 34439127 - 34439362
Alignment:
| Q |
16 |
gaatgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgtaga |
115 |
Q |
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| T |
34439127 |
gaatgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgtaga |
34439226 |
T |
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| Q |
116 |
agcatctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggctgaacactccataccttcaacacacttccaatcaggt |
215 |
Q |
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| T |
34439227 |
agcatctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggcggaacactccataccttcaacacacttccaatcaggt |
34439326 |
T |
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| Q |
216 |
tccctatcagcaacaatcataaccatagtatgaaaa |
251 |
Q |
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| T |
34439327 |
tccctatcagcaaaaatcataaccatagtatgaaaa |
34439362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34422272 - 34422504
Alignment:
| Q |
19 |
tgaacgaaccaatcatacaaccagtaaagaaaacagcttgaacaagtccaactttaaacttgtcaccacatatcaaactccactcagtcaccgtagaagc |
118 |
Q |
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||||| ||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||| |||||||||||| |
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| T |
34422272 |
tgaactaaccaatcatacacccagcaaagaaaagagcttgaacaagtccaatcttaaacttatcaccacaaatcaaactccattcagacaccgtagaagc |
34422371 |
T |
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| Q |
119 |
atctttccctccgatccactcccacgacgacgacgccatatcgcagacacttccatcggctgaacactccataccttcaacacacttccaatcaggttcc |
218 |
Q |
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| T |
34422372 |
accttcaccagcaacccactgccacgacgacgatgccatatcgcagacacttccattggcggaacactccataccttcaacacacttccaatcaggttcc |
34422471 |
T |
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| Q |
219 |
ctatcagcaacaatcataaccatagtatgaaaa |
251 |
Q |
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| T |
34422472 |
ctatcagcaaaaatcataaccatagtatgaaaa |
34422504 |
T |
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