View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_59 (Length: 250)
Name: NF14366_low_59
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_59 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 31008107 - 31008346
Alignment:
| Q |
11 |
caaagggtagatagtagacttgttcatctatttcctaaccaaaagtatattaaaaacaaaatggtaggtggaaatattcgaatttataattatcaatttg |
110 |
Q |
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| T |
31008107 |
caaagggtagatagtagacttgttcatctatttcctaaccaaaagtatattaaaaacaaaatggtaggtggaaatattcgaatttataattatcaatttg |
31008206 |
T |
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| Q |
111 |
atgattaagtcatttgttttggaccagaagttatacagcacatgacatgagttgtttatgtaattgccaaaagactcattccaaacattgctttannnnn |
210 |
Q |
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| T |
31008207 |
atgattaagtcatttgttttggaccagaagttatacagcacatgacatgagttgtttatgtaattgccaaaagactcattccaaacattgctttattttt |
31008306 |
T |
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| Q |
211 |
nnngacaaaaccaaactttgcttatatagtgttctatgac |
250 |
Q |
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| T |
31008307 |
tttgacaaaaccaaactttgcttctatagtgttctatgac |
31008346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 30940653 - 30940696
Alignment:
| Q |
148 |
gcacatgacatgagttgtttatgtaattgccaaaagactcattc |
191 |
Q |
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| T |
30940653 |
gcacatcacatgagttgtttatgtaattgccaaaagactcattc |
30940696 |
T |
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