View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_67 (Length: 233)
Name: NF14366_low_67
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_67 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 33802672 - 33802902
Alignment:
| Q |
3 |
tgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtactacttagtcctgct |
102 |
Q |
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| T |
33802672 |
tgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtactacttagtcctgct |
33802771 |
T |
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| Q |
103 |
tctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgataaggatgaaaaggag |
202 |
Q |
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| T |
33802772 |
tctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgataaggatgaaaaggag |
33802871 |
T |
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| Q |
203 |
gaggaagagtgcgtcttctgctaaacctttc |
233 |
Q |
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| T |
33802872 |
gaggaagagtgcgtcttctgctaaacctttc |
33802902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 33731291 - 33731523
Alignment:
| Q |
1 |
cttgttgtttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtactacttagtcctg |
100 |
Q |
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| T |
33731291 |
cttgttgcttctcttgttgctgcagagggatatagaaatgatgcaggaccaccaggagagctattaatttcagacagagtagtagtactacttagtcctg |
33731390 |
T |
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| Q |
101 |
cttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgataaggatgaaaagg |
200 |
Q |
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| T |
33731391 |
cttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtaggtaaagaagacatgttattgacattgtcttgataaggatgaaaagg |
33731490 |
T |
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| Q |
201 |
aggaggaagagtgcgtcttctgctaaacctttc |
233 |
Q |
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| T |
33731491 |
aggaggaagagtgtgtcttctgctaaacctttc |
33731523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 222
Target Start/End: Complemental strand, 6126368 - 6126204
Alignment:
| Q |
55 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
154 |
Q |
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| T |
6126368 |
ggagggctattaatttcgaactgagtagtagcactacttggtcctgcatctatatcagcatcttcatacatcaagaacttatcccaaaatgtttcttgcg |
6126269 |
T |
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| Q |
155 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctg |
222 |
Q |
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| T |
6126268 |
gtaaagaagacgtgtt---gacattgtcttgatgaatatgaaaaggaggaggaagagtgcgtcttctg |
6126204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 6145784 - 6145621
Alignment:
| Q |
55 |
ggagagctattaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcatccatgatgaaatgatcccaaaatgttgttgtag |
154 |
Q |
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| T |
6145784 |
ggagggctattaatttcggaccgatttgtagcactacttggtcctgcatttatatcatcatcttcattcatcaggaaatgatcccaaaatgtttctt--- |
6145688 |
T |
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| Q |
155 |
gtaaagaagacatgttattgacattgtcttgataaggatgaaaaggaggaggaagagtgcgtcttctgct |
224 |
Q |
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| T |
6145687 |
gtgatgaagacatgtt---gacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgct |
6145621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 34283432 - 34283397
Alignment:
| Q |
11 |
ctcttgttgctgcagagggatatagaaatgatgcag |
46 |
Q |
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| T |
34283432 |
ctcttattgctgcagagggatatagaaatgatgcag |
34283397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 10343368 - 10343426
Alignment:
| Q |
63 |
attaatttcagacagagtagtagtactacttagtcctgcttctacatcaacatcttcat |
121 |
Q |
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| T |
10343368 |
attaatttgagacagagtagtagtactatttggtcctgcgcctacatcaacaacttcat |
10343426 |
T |
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