View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_73 (Length: 222)
Name: NF14366_low_73
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 329588 - 329402
Alignment:
| Q |
18 |
aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttaatttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc |
117 |
Q |
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| T |
329588 |
aagaaaaaaggaataaagatattagctagtaaaaatcatagaagggtttagtttgcttacaggagcaatcagcaaatgatggaatcaaactgaactgggc |
329489 |
T |
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| Q |
118 |
tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtttaat |
204 |
Q |
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| T |
329488 |
tgaccttagagaacttcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagcagtacctggaaagtttaat |
329402 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 1202352 - 1202405
Alignment:
| Q |
133 |
tcttgtccctttcgtagtcaaggcctggaggtgcattttgcaaagtcataagca |
186 |
Q |
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| T |
1202352 |
tcttgtctctttcataatcaagacctggaggggcattctgcaaagtcataagca |
1202405 |
T |
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