View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14366_low_9 (Length: 620)
Name: NF14366_low_9
Description: NF14366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14366_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 16975957 - 16975382
Alignment:
| Q |
18 |
agatgaagctagcggaagtccatcatgttgttgtgaacacaacatttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattact |
117 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16975957 |
agatgaagctagtggaagtccatcatgttgtagtgaacacaacatttttctagatgaagagatcggtgaattttgcaaatcatgtggcgtggttattact |
16975858 |
T |
|
| Q |
118 |
gagatgaaatatatctcaccactagtggtaagctcagtttcatattgatttatttaaaataacttcgtacttttt-atttttatcttgattagtggaatt |
216 |
Q |
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||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
16975857 |
gagatcaaatatatctcaccactagtggtaacctcggtttcatattgatttatttaaaataactttgtacttttttatttttatcttgattagtgaaatt |
16975758 |
T |
|
| Q |
217 |
tgaacaaaccactattattctgcaaaatgtggcaattcaatggaaagggttgtctaattgcggctaaagcagtgctattttgaacatacgactatatttt |
316 |
Q |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
16975757 |
tgatcaaaccactattattctgcaaaatgtggcgattcaatggaaagggttgtctaattgccgctaaatcagtgctattttgaacatacgactatatttt |
16975658 |
T |
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| Q |
317 |
acgatctgcaattgccgttataatttattgcatcatactgtaatttaatcccaaatctctgatttgattatgaaatttgcttaatttatgaagctccggc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16975657 |
acgatctgcaattgccgttataatttattgcatcatactgtaatttaatcccaaatctctgatttgattatgaaatttgcttaatctatgaagctccggc |
16975558 |
T |
|
| Q |
417 |
atagacacaaatacttgacactatactgatatgagacattgataataatttaaggaaaacaacaaataaataggattacattttgtactacattagcgac |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16975557 |
atagacacaaatacttgacactatactgatatgagacattgataataatttaaggaaaacaacaaataaataggattacattttttactacattagcgac |
16975458 |
T |
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| Q |
517 |
agttagaaaagatcggagggagtagttaagtattttcccgtttatttgnnnnnnnctcaggttatttcaataaatt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16975457 |
agttagaaaagatcggagggagtagttaagtattttcccgtttatttgtttttttctcaggttatttcaataaatt |
16975382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 16967160 - 16966948
Alignment:
| Q |
18 |
agatgaagctagcggaagtccatcatgttgttgtgaacacaacatttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattact |
117 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
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| T |
16967160 |
agatgaagctagcggaagtccatcatcttgttgtgaacacaacatttttctcgatgaagagattggtgaatattgcaaatcatgtggcgtggttattacc |
16967061 |
T |
|
| Q |
118 |
gagatgaaatatatctcaccactagtggtaagctcagtttcatattgatttatttaaaataacttcgt--actttttatttttatcttgattagtggaat |
215 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| || | |||||||||| ||| ||||||||| ||| |
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| T |
16967060 |
gagaccaaatatatctcaccactagtggtaagcaaggtttcatgttgatttatgtaaaataactttgttaattttttattttgatc-tgattagtgaaat |
16966962 |
T |
|
| Q |
216 |
ttgaacaaaccact |
229 |
Q |
| |
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|||||||||||||| |
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| T |
16966961 |
ttgaacaaaccact |
16966948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 10602879 - 10603083
Alignment:
| Q |
28 |
agcggaagtccatcatgttgttgtgaacacaacatttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattactgagatgaaat |
127 |
Q |
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|||||||||||||||| | | ||||||||| ||| ||||||||| |||||||| |||| || |||||||| ||||||||||||||||||||||| |||| |
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| T |
10602879 |
agcggaagtccatcatctcgatgtgaacacgacacttttctcgacgaagagattggtgtatattgcaaattgtgtggtgtggttattactgagatcaaat |
10602978 |
T |
|
| Q |
128 |
atatctcaccactagtggtaagctcagtttcatattgatttatttaaaataacttcg-tacttt--ttatttttatcttgattagtggaatttgaacaaa |
224 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||| ||||||||||| | |||||| | ||||| |||||||||||| |||||||||| | |
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| T |
10602979 |
atatctcaccactagtggtaagcatggtttcgtattgatttaaataaaataacttggttacttttctgattttggtcttgattagtgaaatttgaacaca |
10603078 |
T |
|
| Q |
225 |
ccact |
229 |
Q |
| |
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||||| |
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| T |
10603079 |
ccact |
10603083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 63 - 316
Target Start/End: Complemental strand, 16991254 - 16991000
Alignment:
| Q |
63 |
ttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattactgagatgaaatatatctcaccactagtggtaagctcagtttcatat |
162 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||| ||| || |||| |||||||||| |||||||||||||||| ||||||||| | ||||||| | |
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| T |
16991254 |
ttttctcgatgaagagattggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacccgtggtaagcactgtttcatgt |
16991155 |
T |
|
| Q |
163 |
tgatttatttaaaataacttcg-tacttttt--atttttatcttgattagtggaatttgaacaaaccactattattctgcaaaatgtggcaattcaatgg |
259 |
Q |
| |
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| |||||| ||||||||||| | || ||||| ||||| ||||||| ||| | |||||||| ||| ||||| ||| |||| | | ||| ||||||| |
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| T |
16991154 |
ttatttatgtaaaataacttagataattttttaattttgatcttga-tagcgaaatttgaa-aaaatgctattgttccgcaataggcggcgattcaatat |
16991057 |
T |
|
| Q |
260 |
aaagggttgtctaattgcggctaaagcagtgctattttgaacatacgactatatttt |
316 |
Q |
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|| |||||||||||| |||||||| | |||||||||||||||| |||||||||| |
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| T |
16991056 |
gaactgttgtctaattgtggctaaagtggcgctattttgaacataccactatatttt |
16991000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 17006810 - 17006691
Alignment:
| Q |
30 |
cggaagtccatcatgttgttgtgaacacaacatttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattactgagatgaaatat |
129 |
Q |
| |
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||||| |||||||| | |||||||||| ||| ||| || || ||| |||| ||| || |||||||| |||||||||||||||||||||||| ||| || |
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| T |
17006810 |
cggaaatccatcatctcgttgtgaacatgacactttgcttgacgaacagattggtatatattgcaaattatgtggtgtggttattactgagatcaaagat |
17006711 |
T |
|
| Q |
130 |
atctcaccactagtggtaag |
149 |
Q |
| |
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||||||| |||||||||||| |
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| T |
17006710 |
atctcacaactagtggtaag |
17006691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 16822926 - 16822844
Alignment:
| Q |
100 |
tgtggtgtggttattactgagatgaaatatatctcaccactagtggtaagctcagtttcatattgatttatttaaaataactt |
182 |
Q |
| |
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|||||||||||| | |||||||| |||||| |||||| ||| ||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
16822926 |
tgtggtgtggttgtcactgagatcaaatatgtctcacaactggtggtaagcacagttacatattgatttatgtaaaataactt |
16822844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 35264143 - 35264260
Alignment:
| Q |
63 |
ttttctcgatgaagagatcggtgaattttgcaaatcatgtggtgtggttattactgagatgaaatatatctcaccactagtggtaagctcagtttcatat |
162 |
Q |
| |
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|||||||||||||||||| ||| ||||||||||| ||| || |||| |||||||||| |||||||||||||||| ||||||||| | ||||||| | |
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| T |
35264143 |
ttttctcgatgaagagattggtctattttgcaaattgtgtcatgaggttgttactgagatcaaatatatctcaccacctgtggtaagcaccgtttcatgt |
35264242 |
T |
|
| Q |
163 |
tgatttatttaaaataac |
180 |
Q |
| |
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| |||||| ||||||||| |
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|
| T |
35264243 |
ttatttatgtaaaataac |
35264260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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