View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14367_high_1 (Length: 554)
Name: NF14367_high_1
Description: NF14367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14367_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 74 - 496
Target Start/End: Complemental strand, 37707542 - 37707120
Alignment:
| Q |
74 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga |
173 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
37707542 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcggctctagtgtacgccatactgga |
37707443 |
T |
|
| Q |
174 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707442 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
37707343 |
T |
|
| Q |
274 |
aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatatttcacagtataatctactaatacccgtgtctaattcacattttgtag |
373 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707342 |
aacaaagtgttattttccatgatctgcgattctggtgaaaacccacaagatatttcacggtataatctactaatacccgtgtctaattcacattttgtag |
37707243 |
T |
|
| Q |
374 |
gattggtactctgcaagaaatgtgcaggttctggctattcccgaaggttatgagctttgaattcagctttatatctcaaatcttcttcctctgacatccg |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37707242 |
gattggtactctgcaagaaatgtgcaggttctggctattcccgaaggttatgagctttgaattcagctttatatctcaaatcttcttcctctgacatccg |
37707143 |
T |
|
| Q |
474 |
caagatcttgtaactatcttatt |
496 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37707142 |
caagatcttgtaactatcttatt |
37707120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 74 - 503
Target Start/End: Complemental strand, 37443322 - 37442892
Alignment:
| Q |
74 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37443322 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcagctatagtgtacgccatactgga |
37443223 |
T |
|
| Q |
174 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||| |
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| T |
37443222 |
atttgaataaatcgttattgttttgcgatacgttattcgatatagttttgttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttg |
37443123 |
T |
|
| Q |
274 |
aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagata-tttcacagtataatctactaatacccgtgtctaattcacattttgta |
372 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37443122 |
aacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaagatattttcatggtataatctactaatacccgtgtctaattcacattttgta |
37443023 |
T |
|
| Q |
373 |
ggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggttatgagctttgaattcagctttatatctcaaatcttcttcctctgacatcc |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||||||| |
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| T |
37443022 |
ggattggtactctgcaagaaatgtgcaggttctggctattcccgaaggttatgagctttgaattcagccttatagcttaaatcttcttcccctgacatct |
37442923 |
T |
|
| Q |
473 |
gcaagatcttgtaactatcttattgttcata |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
37442922 |
gcaagatcttgtaactatcttattgttcata |
37442892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 37704454 - 37704520
Alignment:
| Q |
13 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37704454 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgttttggg |
37704520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 37698636 - 37698697
Alignment:
| Q |
13 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttattttgtt |
74 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
37698636 |
accaaaaagtttgacttattagattgtttacaaattgagtctaagtattcccttattttgtt |
37698697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 37698974 - 37699041
Alignment:
| Q |
14 |
ccaaaaaggttgacttattagattgtttgcaaa--ttgagtctacgtattcccttattttgttttggg |
79 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||||||||| ||||| |
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| T |
37698974 |
ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttattttgtgttggg |
37699041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 37437520 - 37437578
Alignment:
| Q |
13 |
accaaaaaggttgacttattagattgtttgcaaattgagtctacgtattcccttatttt |
71 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||||| ||||||||| |||| |
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|
| T |
37437520 |
accaaaaagtctgacttattagattgtttacaaattcagtctagctattcccttgtttt |
37437578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
| Q |
170 |
tggaatttgaataaatcgttattgttttgcgata |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
39647292 |
tggaatttgaataaatcgttattgttctgcgata |
39647259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
| Q |
247 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || ||||||||| ||||||| |
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|
| T |
34925316 |
tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc |
34925263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
| Q |
220 |
tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
291 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| ||||||||||| |
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|
| T |
11501559 |
tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc |
11501488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
| Q |
176 |
ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct |
238 |
Q |
| |
|
||||| |||||||||||||||||| ||| | |||||| || ||| |||| ||||||||||||| |
|
|
| T |
4541583 |
ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct |
4541645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
| Q |
267 |
gaatttgaacaaagtgttattttccatgatctgcgatt |
304 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
10363462 |
gaatttgaacaaaatgctattttccatgatctgcgatt |
10363499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
| Q |
246 |
ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
291 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
21901327 |
ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc |
21901372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
| Q |
247 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt |
304 |
Q |
| |
|
||||||| |||| | |||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
38434185 |
tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt |
38434242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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